ghattem's library 226 articles Export

	Viral population estimation using pyrosequencing. [My Copy] PLoS computational biology, Vol. 4, No. 4. (9 April 2008), e1000074. by Nicholas Eriksson, Lior Pachter, Yumi Mitsuya, et al.Soo-Yon Y. Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W. Shafer, Niko Beerenwinkel posted to no-tag by ghattem on 2009-10-09 22:56:27 as along with 6 people and 2 groups nfparrish jonilaserson hpaces jmeppley bmaust djkt SIMR bioinformatics iSEEM
	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos [My Copy] Developmental Cell, Vol. 17, No. 3. (15 September 2009), pp. 425-434. by Robert C. Akkers, Simon J. van Heeringen, Ulrike G. Jacobi, et al.Eva M. Janssen-Megens, Kees-Jan Françoijs, Hendrik G. Stunnenberg, Gert J. Veenstra posted to rna-seq chip-seq by ghattem on 2009-09-21 20:09:04 as along with 2 people and 1 group fenghezi inesdesantiago SIMR bioinformatics
	Identifiability of isoform deconvolution from junction arrays and RNA-Seq [My Copy] Bioinformatics (16 September 2009), btp544. by David Hiller, Hui Jiang, Weihong Xu, Wing H. Wong posted to rna-seq alternative_splicing by ghattem on 2009-09-21 20:02:31 as along with 2 people and 1 group cajunsushi GeeSharpMinor SIMR bioinformatics
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to alignment_tool nextgen_sequencing by ghattem on 2009-08-05 16:49:50 as along with 33 people and 2 groups adijr darian bozdagd jmanning2k stubrown APRegier jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	Efficient large-scale sequence comparison by locality-sensitive hashing. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 5. (1 May 2001), pp. 419-428. by J. Buhler posted to alignment_tool nextgen_sequencing by ghattem on 2009-08-05 16:47:29 as along with 2 people and 1 group nedwards RamuAnandakrishnan SIMR bioinformatics
	A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus <italic>Salmonella</italic> Typhi [My Copy] PLoS Genet, Vol. 5, No. 7. (17 July 2009), e1000569. by Timothy T. Perkins, Robert A. Kingsley, Maria C. Fookes, et al.Paul P. Gardner, Keith D. James, Lu Yu, Samuel A. Assefa, Miao He, Nicholas J. Croucher, Derek J. Pickard, Duncan J. Maskell, Julian Parkhill, Jyoti Choudhary, Nicholas R. Thomson, Gordon Dougan posted to nextgen_sequencing rna-seq by ghattem on 2009-07-24 15:56:44 as along with 4 people and 2 groups stubrown fenghezi GeeSharpMinor ppgardne SIMR bioinformatics Journal picks
	Transcriptome analysis by strand-specific sequencing of complementary DNA [My Copy] Nucl. Acids Res., Vol. 37, No. 18. (1 October 2009), e123. by Dmitri Parkhomchuk, Tatiana Borodina, Vyacheslav Amstislavskiy, et al.Maria Banaru, Linda Hallen, Sylvia Krobitsch, Hans Lehrach, Alexey Soldatov posted to nextgen_sequencing rna-seq by ghattem on 2009-07-24 15:54:21 as along with 4 people and 2 groups inesdesantiago dswan stajich guhjy Mycology SIMR bioinformatics
	A general framework for multiple testing dependence [My Copy] Proceedings of the National Academy of Sciences (24 November 2008) by Jeffrey T. Leek, John D. Storey posted to microarray multiple_testing by ghattem on 2009-07-09 23:54:03 as along with 10 people and 1 group TRHvidsten guhjy briordan dbk stringertheory jiqiu fpattyn barriot tmmurali jjray SIMR bioinformatics
	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted to nextgen_sequencing by ghattem on 2009-06-26 19:08:34 as along with 19 people and 4 groups dakelley sotacam lh49 djkt rtogawa cassj dswan torfinnnome rschulz natstreet druvus jasontsai jmeppley nuin polivares n00c aprasad niallhaslam idoerg Bioinformatics BergmanLab SIMR bioinformatics Journal picks
	A clustering approach for identification of enriched domains from histone modification ChIP-Seq data [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1952-1958. by Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, Weiqun Peng posted to chip-seq by ghattem on 2009-06-23 19:17:00 as along with 11 people and 2 groups hagechouchin443 ashraya stubrown cassj guhjy humburg ewilban1 gdb inesdesantiago fenghezi polivares SIMR bioinformatics BergmanLab
	Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq [My Copy] Nucl. Acids Res., Vol. 37, No. 16. (1 September 2009), e106. by Iouri Chepelev, Gang Wei, Qingsong Tang, Keji Zhao posted to rna-seq snp by ghattem on 2009-06-23 18:57:28 as along with 5 people and 1 group woodson8 n00c guhjy fenghezi GeeSharpMinor SIMR bioinformatics
	Annotating genomes with massive-scale RNA sequencing. [My Copy] Genome biology, Vol. 9, No. 12. (2008), R175. by France Denoeud, Jean-Marc M. Aury, Corinne Da Silva, et al.Benjamin Noel, Odile Rogier, Massimo Delledonne, Michele Morgante, Giorgio Valle, Patrick Wincker, Claude Scarpelli, Olivier Jaillon, François Artiguenave posted to rna-seq by ghattem on 2009-06-15 17:52:53 as along with 19 people and 1 group cthachuk GustavoLacerda jamselem n00c jonilaserson nlapalu jmcq dandaman abizar dakelley inesdesantiago mhamada pengchy balicea fhalbrit GeeSharpMinor natstreet druvus neils SIMR bioinformatics
	How to map billions of short reads onto genomes. [My Copy] Nature biotechnology, Vol. 27, No. 5. (May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to alignment_tool nextgen_sequencing by ghattem on 2009-06-09 23:12:46 as along with 22 people and 4 groups torfinnnome daforerog jonilaserson mkiyer Annab darian polivares kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	An expectation-maximization algorithm for probabilistic reconstructions of full-length isoforms from splice graphs. [My Copy] Nucleic acids research, Vol. 34, No. 10. (2006), pp. 3150-3160. by Y. Xing, T. Yu, Y. N. Wu, M. Roy, J. Kim, C. Lee posted to alternative_splicing by ghattem on 2009-06-09 19:01:58 as along with 1 group SIMR bioinformatics
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to alignment_tool nextgen_sequencing by ghattem on 2009-06-09 18:45:25 as along with 29 people and 4 groups bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon n00c danmaclean ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	The need for speed [My Copy] Genome Biology, Vol. 10, No. 3. (2009), 212. by Paul Flicek posted to alignment_tool nextgen_sequencing by ghattem on 2009-06-09 18:39:17 as along with 3 people and 1 group seb1 n00c druvus SIMR bioinformatics
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted to alignment_tool nextgen_sequencing by ghattem on 2009-06-09 18:37:27 as along with 31 people and 4 groups adijr debasis bozdagd polivares torfinnnome n00c talponer jmcq rschulz operon humburg idonaldson mmartin skembel dquest heliopais djkt GeeSharpMinor bertelsen darian semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus BergmanLab SIMR bioinformatics iSEEM Notre Dame Bioinformatics
	A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level [My Copy] Nucl. Acids Res., Vol. 37, No. 10. (1 June 2009), e75. by Sika Zheng, Liang Chen posted to rna-seq by ghattem on 2009-06-03 22:52:55 as along with 5 people and 1 group debasis woodson8 guhjy GeeSharpMinor neils SIMR bioinformatics
	TopHat: discovering splice junctions with RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted to rna-seq by ghattem on 2009-06-03 22:47:46 as along with 21 people and 2 groups heliopais dakelley druvus GustavoLacerda stubrown polivares torfinnnome jmcq mtagaya jonilaserson gdb guhjy ThomasDOtto n00c xingxu djkt vplagnol bertelsen natstreet idoerg vmsr BergmanLab SIMR bioinformatics
	Statistical inferences for isoform expression in RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 1026-1032. by Hui Jiang, Wing H. Wong posted to rna-seq by ghattem on 2009-06-03 22:41:00 as along with 14 people and 2 groups heliopais stubrown GustavoLacerda woodson8 ThomasDOtto stajich guhjy djkt shikin pengchy vplagnol rschulz jmcq GeeSharpMinor Mycology SIMR bioinformatics
	Transcript length bias in RNA-seq data confounds systems biology [My Copy] Biology Direct, Vol. 4, No. 1. (16 April 2009), 14. by Alicia Oshlack, Matthew Wakefield posted to rna-seq by ghattem on 2009-06-02 20:25:42 as along with 12 people and 1 group jwfoley juokcho debasis stubrown dswan jmcq guhjy woodson8 n00c xingxu cajunsushi bandrewfox SIMR bioinformatics
	Mapping and quantifying mammalian transcriptomes by RNA-Seq. [My Copy] Nature methods, Vol. 5, No. 7. (30 July 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted to rna-seq by ghattem on 2009-06-02 17:37:30 as along with 39 people and 2 groups jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb Bioinformatics SIMR bioinformatics
	Clustering gene-expression data with repeated measurements [My Copy] Genome Biology, Vol. 4, No. 5. (2003) by Ka Yeung, Mario Medvedovic, Roger Bumgarner posted to clustering microarray by ghattem on 2009-04-07 19:26:27 as along with 1 person and 1 group aviad_work SIMR bioinformatics
	Using repeated measurements to validate hierarchical gene clusters. [My Copy] Bioinformatics (19 January 2008) by Laurent Bréhélin, Olivier Gascuel, Olivier Martin posted to bootstrap clustering microarray by ghattem on 2009-04-07 16:19:55 as along with 4 people and 1 group jfr shigepong dfournier guhjy SIMR bioinformatics
	Uncoupling Time and Space in the Collinear Regulation of <italic>Hox</italic> Genes [My Copy] PLoS Genet, Vol. 5, No. 3. (6 March 2009), e1000398. by Patrick Tschopp, Basile Tarchini, François Spitz, Jozsef Zakany, Denis Duboule posted to hox by ghattem on 2009-04-06 16:57:29 as along with 1 person and 1 group inesdesantiago SIMR bioinformatics
	Reproducible clusters from microarray research: whither? [My Copy] BMC Bioinformatics, Vol. 6 Suppl 2 (15 July 2005) by N. R. Garge, G. P. Page, A. P. Sprague, B. S. Gorman, D. B. Allison posted to clustering microarray by ghattem on 2009-03-13 21:24:12 as along with 1 person and 1 group jfr SIMR bioinformatics
	New resampling method for evaluating stability of clusters [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Irina G. Dresen, Tanja Boes, Johannes Huesing, Markus Neuhaeuser, Karl H. Joeckel posted to bootstrap clustering microarray by ghattem on 2009-03-13 21:20:03 as along with 7 people and 2 groups Dori2008 derwisch sobolevnrm RamuAnandakrishnan jfr guhjy aviad_work SIMR bioinformatics baker-group
	Evaluation of clustering algorithms for gene expression data. [My Copy] BMC bioinformatics, Vol. 7 Suppl 4 (2006) by S. Datta, S. Datta posted to clustering microarray by ghattem on 2009-03-13 21:19:12 as along with 1 person and 1 group dragonrez SIMR bioinformatics
	Comparison of small n statistical tests of differential expression applied to microarrays. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Carl Murie, Owen Woody, Anna Y. Lee, Robert Nadon posted to microarray by ghattem on 2009-02-03 16:47:48 as along with 9 people and 2 groups zufar guhjy daforerog rdiaz renatomilani dswan Zephyrus behindtherabbit druvus Bioinformatics SIMR bioinformatics
	PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. [My Copy] Nature biotechnology, Vol. 27, No. 1. (04 January 2009), pp. 66-75. by Joel Rozowsky, Ghia Euskirchen, Raymond K. Auerbach, et al.Zhengdong D. Zhang, Theodore Gibson, Robert Bjornson, Nicholas Carriero, Michael Snyder, Mark B. Gerstein posted to chip-seq peak_finding software by ghattem on 2009-01-27 15:24:04 as along with 17 people and 1 group fpattyn gdb huali ewilban1 fenghezi smiddha jfr bertelsen JeremyZucker cassj inesdesantiago dakelley abizar polivares idonaldson WanderingAengus guhjy SIMR bioinformatics
	Use of normalization methods for analysis of microarrays containing a high degree of gene effects [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Terri Ni, William Lemon, Yu Shyr, Tao Zhong posted to microarray normalization by ghattem on 2009-01-13 16:08:02 as along with 5 people and 1 group jfr guhjy dswan barriot GeeSharpMinor SIMR bioinformatics
	Global rank-invariant set normalization (GRSN) to reduce systematic distortions in microarray data. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by C. R. Pelz, M. Kulesz-Martin, G. Bagby, R. C. Sears posted to microarray normalization by ghattem on 2009-01-13 16:07:41 as along with 3 people and 1 group jfr guhjy GeeSharpMinor SIMR bioinformatics
	Real-Time DNA Sequencing from Single Polymerase Molecules [My Copy] Science, Vol. 323, No. 5910. (2 January 2009), pp. 133-138. by John Eid, Adrian Fehr, Jeremy Gray, et al.Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex deWinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner posted to nextgen_sequencing by ghattem on 2009-01-05 23:22:43 as along with 37 people and 3 groups operon n00c kinestetika mtagaya jlgreen dna idoerg absterga lukzky ImranRaoufMalik Archaeogenetics inesdesantiago 7ac5 wimufi cactus jasontsai mlangill melting polivares pkonings natstreet fhalbrit druvus felsani samjlord Stew nedwards myzhang pengchy jbhiatt GeeSharpMinor GustavoLacerda azazello sconlan alexknight emptyhb caseybrown iSEEM moernerlab Bioinformatics - CRUK
	GPAT: retrieval of genomic annotation from large genomic position datasets. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by A. Krebs, M. Frontini, L. Tora posted to chip-chip chip-seq software by ghattem on 2008-12-19 14:42:49 as along with 5 people and 1 group guhjy abizar druvus fhalbrit neils SIMR bioinformatics
	Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 523. by David Nix, Samir Courdy, Kenneth Boucher posted to chip-seq by ghattem on 2008-12-10 20:12:37 as along with 9 people and 2 groups darian gdb slv23 inesdesantiago ewilban1 floatingpoint WanderingAengus magusina caseybrown Bioinformatics - CRUK SIMR bioinformatics
	Analyzing gene expression data in terms of gene sets: methodological issues [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 980-987. by Jelle J. Goeman, Peter Buhlmann posted to gene_ontology gene_set hypergeometric by ghattem on 2008-12-08 16:34:54 as along with 17 people and 3 groups srp33 bertelsen jperkins ptrobajo VGreiff tonamswish ipark-kaist aramesh2 ydhwang shikin raiyar jfr ealloza shigepong heliopais guhjy diging_data SIMR bioinformatics BioinfoCIPF BTS-PT-AS-CS
	Global protein stability profiling in mammalian cells. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5903. (7 November 2008), pp. 918-923. by Hsueh-Chi Sherry C. Yen, Qikai Xu, Danny M. Chou, Zhenming Zhao, Stephen J. Elledge posted to flow_cytometry microarray protein_stabilization by ghattem on 2008-12-04 23:19:17 as along with 6 people yyfwuhan guhjy lflorez jbhiatt tyrell_turing lptolik
	Poisson Approximation for Significance in Genome-wide ChIP-chip Tiling Arrays [My Copy] Bioinformatics (25 October 2008), btn549. by Yu Zhang posted to chip-chip microarray by ghattem on 2008-12-04 16:56:50 as along with 4 people and 2 groups jfr Stew behindtherabbit djkt Bioinformatics - CRUK SIMR bioinformatics
	Optimization of experimental design parameters for high-throughput chromatin immunoprecipitation studies. [My Copy] Nucleic acids research (21 October 2008) by Romina Ponzielli, Paul C C. Boutros, Sigal Katz, et al.Angelina Stojanova, Adam P P. Hanley, Fereshteh Khosravi, Christina Bros, Igor Jurisica, Linda Z Z. Penn posted to chip-chip microarray by ghattem on 2008-12-04 16:55:01 as along with 1 person and 1 group guhjy SIMR bioinformatics
	Positional distribution of human transcription factor binding sites. [My Copy] Nucleic acids research (25 October 2008) by Mark Koudritsky, Eytan Domany posted to chip-chip microarray by ghattem on 2008-12-04 16:53:07 as along with 9 people and 2 groups daforerog jfr jforman barriot fpattyn nklee maximilianh idonaldson nuin SIMR bioinformatics BenosLab
	Analyzing ChIP-chip Data Using Bioconductor [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000227. by Joern Toedling, Wolfgang Huber posted to bioconductor chip-chip microarray software by ghattem on 2008-12-04 16:41:21 as along with 9 people and 1 group tonamswish phoenixzxl jfr bertelsen cabbagesofdoom antonkratz guhjy barry dswan SIMR bioinformatics
	Design and analysis of ChIP-seq experiments for DNA-binding proteins. [My Copy] Nature biotechnology, Vol. 26, No. 12. (16 December 2008), pp. 1351-1359. by Peter V. Kharchenko, Michael Y. Tolstorukov, Peter J. Park posted to chip-seq by ghattem on 2008-12-04 16:23:25 as along with 18 people and 2 groups stubrown guhjy gdb tonamswish ewilban1 coela ekotelnikova jfr floatingpoint idonaldson inesdesantiago WanderingAengus vplagnol xwbcn fpattyn mutagenic kengg rschulz KCL & UCL Bioinformatics SIMR bioinformatics
	Prevention of the neurocristopathy Treacher Collins syndrome through inhibition of p53 function [My Copy] Nature Medicine, Vol. 14, No. 2. (03 February 2008), pp. 125-133. by Natalie C. Jones, Megan L. Lynn, Karin Gaudenz, et al.Daisuke Sakai, Kazushi Aoto, Jean-Phillipe Rey, Earl F. Glynn, Lacey Ellington, Chunying Du, Jill Dixon, Michael J. Dixon, Paul A. Trainor posted to neural_crest p53 tcof1 treacher_collins_syndrome by ghattem on 2008-12-04 15:55:13 as
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to chip-seq illumina1g solexa by ghattem on 2008-10-24 20:02:29 as along with 23 people and 2 groups Vincent_Rouilly darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz mcm polivares gdb yadadi djkt stajich mdperry fpattyn bcondon idonaldson caseybrown kengg SIMR bioinformatics Mycology
	A comprehensive library of histone mutants identifies nucleosomal residues required for H3K4 methylation. [My Copy] Nature structural & molecular biology (11 July 2008) by Shima Nakanishi, Brian W W. Sanderson, Kym M M. Delventhal, William D D. Bradford, Karen Staehling-Hampton, Ali Shilatifard posted to no-tag by ghattem on 2008-10-23 16:18:04 as along with 1 person epigenetics
	Oscillating signaling pathways during embryonic development. [My Copy] Current opinion in cell biology (6 October 2008) by Alexander Aulehla, Olivier Pourquié posted to no-tag by ghattem on 2008-10-23 16:17:16 as along with 1 person agonzale
	Comparison of pattern detection methods in microarray time series of the segmentation clock. [My Copy] PloS one, Vol. 3, No. 8. (2008) by Mary-Lee L. Dequéant, Sebastian Ahnert, Herbert Edelsbrunner, et al.Thomas M. Fink, Earl F. Glynn, Gaye Hattem, Andrzej Kudlicki, Yuriy Mileyko, Jason Morton, Arcady R. Mushegian, Lior Pachter, Maga Rowicka, Anne Shiu, Bernd Sturmfels, Olivier Pourquié posted to affymetrix microarray time_series by ghattem on 2008-10-23 16:16:46 as along with 1 person carelcad
	Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets [My Copy] Genome Research, Vol. 18, No. 3. (2008), pp. 393-403. by D. S. Johnson, W. Li, D. B. Gordon, et al.A. Bhattacharjee, B. Curry, J. Ghosh, L. Brizuela, J. S. Carroll, M. Brown, P. Flicek, C. M. Koch, I. Dunham, M. Bieda, X. Xu, P. J. Farnham, P. Kapranov, D. A. Nix, T. R. Gingeras, X. Zhang, H. Holster, N. Jiang, R. D. Green, J. S. Song, S. A. Mccuine, E. Anton, L. Nguyen, N. D. Trinklein, Z. Ye, K. Ching, D. Hawkins, B. Ren, P. C. Scacheri, J. Rozowsky, A. Karpikov, G. Euskirchen, S. Weissman, M. Gerstein, M. Snyder, A. Yang, Z. Moqtaderi, H. Hirsch, H. P. Shulha, Y. Fu, Z. Weng, K. Struhl, R. M. Myers, J. D. Lieb, X. S. Liu posted to chip-chip microarray by ghattem on 2008-10-21 16:41:45 as
	'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns [My Copy] Genome Biology, Vol. 1, No. 2. (2000), pp. research0003.1-research0003.21. by Trevor Hastie, Robert Tibshirani, Michael Eisen, et al.Ash Alizadeh, Ronald Levy, Louis Staudt, Wing Chan, David Botstein, Patrick Brown posted to microarray pca svd by ghattem on 2008-03-17 15:27:46 as
	Species differences in brain gene expression profiles associated with adult behavioral maturation in honey bees [My Copy] BMC Genomics, Vol. 8 (29 June 2007), 202. by Moushumi S. Sarma, Charles W. Whitfield, Gene E. Robinson posted to cross-species microarray pca by ghattem on 2008-03-03 20:40:22 as

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microarray	136
affymetrix	55
encode	24
qc	13
clustering	11
rna-seq	11
chip-seq	10
nextgen_sequencing	10
chip-chip	9
time_series	8
solexa	7
454seq	6
alignment_tool	6
cross-species	6
pca	6
software	6
bootstrap	5
ica	5
alternative_splicing	4
normalization	4
chicken	3
classification	3
gene_ontology	3
bioconductor	2
custom_cdf	2
cyclic_genes	2
database	2
digital_gene_expression	2
illumina1g	2
literature_mining	2
probeset	2
annotation	1
anova	1
biological_networks	1
differential_expression	1
flow_cytometry	1
gene_networks	1
gene_set	1
genetic_algorithm	1
hox	1
hypergeometric	1
mds	1
multiple_testing	1
neural_crest	1
orthologues	1
owl	1
p53	1
peak_finding	1
phylogeny	1
protein_stabilization	1
proteomics	1
rma	1
rna_degradation	1
sage	1
sbml	1
snp	1
svd	1
svm	1
tcof1	1
tiling_array	1
treacher_collins_syndrome	1

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