gisle's library 121 articles Export

	A perspective on cold enzymes: current knowledge and frequently asked questions. [My Copy] Cellular and molecular biology (Noisy-le-Grand, France), Vol. 50, No. 5. (July 2004), pp. 643-655. by J. C. Marx, V. Blaise, T. Collins, et al.S. D'Amico, D. Delille, E. Gratia, A. Hoyoux, A. L. Huston, G. Sonan, G. Feller, C. Gerday posted to extrmophiles psychrophiles by gisle on 2008-09-24 13:54:44 as
	Psychrophilic enzymes: molecular basis of cold adaptation. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 53, No. 10. (October 1997), pp. 830-841. by G. Feller, C. Gerday posted to extremophiles psychrophiles by gisle on 2008-09-24 13:37:31 as
	Temperature adaptation of enzymes: roles of the free energy, the enthalpy, and the entropy of activation. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 70, No. 2. (February 1973), pp. 430-432. by P. S. Low, J. L. Bada, G. N. Somero posted to no-tag by gisle on 2008-09-24 13:36:30 as
	Flexibility and enzymatic cold-adaptation: a comparative molecular dynamics investigation of the elastase family. [My Copy] Biochimica et biophysica acta, Vol. 1764, No. 8. (August 2006), pp. 1397-1406. by E. Papaleo, L. Riccardi, C. Villa, P. Fantucci, L. De Gioia posted to extremophiles extrmophiles molecular_dynamics protein_structure psychrophiles by gisle on 2008-09-24 13:00:10 as
	Optimization of electrostatics as a strategy for cold-adaptation: a case study of cold- and warm-active elastases. [My Copy] Journal of molecular graphics & modelling, Vol. 26, No. 1. (July 2007), pp. 93-103. by E. Papaleo, M. Olufsen, L. De Gioia, B. O. Brandsdal posted to molecular_dynamics protein_structure by gisle on 2008-09-24 12:49:46 as
	Serine protease mechanism and specificity. [My Copy] Chemical reviews, Vol. 102, No. 12. (December 2002), pp. 4501-4524. by L. Hedstrom posted to no-tag by gisle on 2008-09-24 10:38:16 as
	Bio3d: an R package for the comparative analysis of protein structures. [My Copy] Bioinformatics (29 August 2006) by Barry J J. Grant, Ana P C P. Rodrigues, Karim M M. Elsawy, J Andrew A. McCammon, Leo S D S. Caves posted to protein_structure by gisle on 2008-09-23 14:43:57 as along with 9 people and 2 groups dfdong dswan ana barry Einat plofje krishnaJCSG insectopalo cdeane structural_bioinformatics Bioinformatics
	VMD: visual molecular dynamics. [My Copy] Journal Molecular Graphics, Vol. 14, No. 1. (February 1996), pp. 33-38. by W. Humphrey, A. Dalke, K. Schulten posted to no-tag by gisle on 2008-09-23 14:42:31 as along with 6 people bratwurst oceanwind dfgreen lna dimka dgront
	Scalable molecular dynamics with NAMD [My Copy] Journal of Computational Chemistry, Vol. 26, No. 16. (December 2005), pp. 1781-1802. by James C. Phillips, Rosemary Braun, Wei Wang, et al.James Gumbart, Emad Tajkhorshid, Elizabeth Villa, Christophe Chipot, Robert D. Skeel, Laxmikant Kalé, Klaus Schulten posted to no-tag by gisle on 2008-09-23 14:38:51 as along with 20 people and 5 groups krapnik pjkiley flbarroso yxue r2s2 grondina rpetrenko oteri oceanwind dfgreen vahmurk dimka jwm ttjoseph sangeetha yoel_rf bilab wilsoros sobolevnrm ibuch Radiation_Damage Stressosome Bioinformatics insilicodrug baker-group
	The crystal structures of the psychrophilic subtilisin S41 and the mesophilic subtilisin Sph reveal the same calcium-loaded state. [My Copy] Proteins (24 July 2008) by Orna Almog, Ana González, Noa Godin, et al.Marina de Leeuw, Marlene J J. Mekel, Daniela Klein, Sergei Braun, Gil Shoham, Richard L L. Walter posted to protein_structure by gisle on 2008-09-23 14:30:43 as
	The 0.93A crystal structure of sphericase: a calcium-loaded serine protease from Bacillus sphaericus. [My Copy] Journal of molecular biology, Vol. 332, No. 5. (3 October 2003), pp. 1071-1082. by O. Almog, A. González, D. Klein, H. M. Greenblatt, S. Braun, G. Shoham posted to protein_structure by gisle on 2008-09-23 14:25:27 as
	Very fast empirical prediction and rationalization of protein pK<SUB><FONT SIZE='-1'>a</FONT></SUB> values [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 4. (1 December 2005), pp. 704-721. by Hui Li, Andrew D. Robertson, Jan H. Jensen posted to molecular_dynamics protein_structure by gisle on 2008-09-23 14:22:48 as along with 9 people and 1 group flbarroso Martin8223 franklu310 RamuAnandakrishnan bicko sim82 barry sunhwan mschofie Bioinformatics
	WHAT IF: a molecular modeling and drug design program. [My Copy] Journal of molecular graphics, Vol. 8, No. 1. (March 1990) by G. Vriend posted to protein_structure by gisle on 2008-09-23 14:20:41 as
	Cold-active enzymes studied by comparative molecular dynamics simulation [My Copy] Journal of Molecular Modeling, Vol. 13, No. 4. (April 2007), pp. 485-497. by Spiwok, Vojtech, Lipovova, et al. Petra, Skalova, Tereza, Duskova, Jarmila, Dohnalek, Jan, Hasek, Jindrich, Russell, Nicholas, Kralova, Blanka posted to no-tag by gisle on 2008-09-23 13:59:30 as
	From Levinthal to pathways to funnels [My Copy] Nature Structural & Molecular Biology, Vol. 4, No. 1. (01 January 1997), pp. 10-19. by Ken A. Dill, Hue S. Chan posted to protein_structure proteinstability by gisle on 2008-09-02 08:46:06 as along with 4 people victorclaessen flbarroso doktornoe jotwin
	The Ultimate Speed Limit to Protein Folding Is Conformational Searching [My Copy] Journal of the American Chemical Society, Vol. 129, No. 39. (1 October 2007), pp. 11920-11927. by Kingshuk Ghosh, S. Banu Ozkan, Ken A. Dill posted to protein_structure by gisle on 2008-09-02 08:43:15 as along with 2 people rph karmarae
	A View of the Hydrophobic Effect [My Copy] J. Phys. Chem. B, Vol. 106, No. 3. (24 January 2002), pp. 521-533. by N. T. Southall, K. A. Dill, A. D. J. Haymet posted to no-tag by gisle on 2008-09-02 08:36:49 as
	Evolutionary conservation of protein vibrational dynamics. [My Copy] Gene, Vol. 422, No. 1-2. (1 October 2008), pp. 7-13. by S. Maguid, S. Fernandez-Alberti, J. Echave posted to dynamics protein_structure by gisle on 2008-09-02 08:02:39 as along with 2 people edvin aqeel
	Evolutionary Conservation of Protein Backbone Flexibility [My Copy] Journal of Molecular Evolution, Vol. 63, No. 4. (14 October 2006), pp. 448-457. by Sandra Maguid, Sebastián Fernández-Alberti, Gustavo Parisi, Julián Echave posted to no-tag by gisle on 2008-09-02 08:01:15 as along with 4 people and 2 groups barry jlh64 edvin tny structural_bioinformatics Bioinformatics
	Exploring the common dynamics of homologous proteins. Application to the globin family. [My Copy] Biophys J, Vol. 89, No. 1. (July 2005), pp. 3-13. by S. Maguid, S. Fernandez-Alberti, L. Ferrelli, J. Echave posted to dynamics protein_structure by gisle on 2008-09-02 07:59:58 as along with 5 people and 2 groups aqeel barry Einat jlh64 edvin structural_bioinformatics Bioinformatics
	Macromolecular Modeling with Rosetta [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008), pp. 363-382. by Rhiju Das, David Baker posted to no-tag by gisle on 2008-09-01 17:37:58 as along with 9 people bmduggan choonpeng mijam kgutwin carlk phoenixzxl krapnik flbarroso saunders
	Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability [My Copy] Journal of Molecular Biology, Vol. 290, No. 2. (9 July 1999), pp. 595-604. by Michael J. Thompson, David Eisenberg posted to extremophiles protein_structure proteinstability thermophiles thermostability by gisle on 2008-09-01 14:02:33 as
	Structural comparison of psychrophilic and mesophilic trypsins [My Copy] European Journal of Biochemistry, Vol. 267, No. 4. (2000), pp. 1039-1049. by Hanna-Kirsti S. Leiros, Nils P. Willassen, Arne O. Smalås posted to extremophiles psychrophiles by gisle on 2008-08-29 15:08:13 as
	Residue determinants and sequence analysis of cold-adapted trypsins [My Copy] Extremophiles, Vol. 3, No. 3. (1999), pp. 205-219. by Schrøder, Nils P. Willassen, A. O. Smalås posted to extremophiles psychrophiles by gisle on 2008-08-29 15:04:47 as
	Amino acid difference formula to help explain protein evolution. [My Copy] Science (New York, N.Y.), Vol. 185, No. 4154. (6 September 1974), pp. 862-864. by R. Grantham posted to evolution mutations by gisle on 2008-08-29 14:05:32 as along with 4 people and 1 group michaelbarton thegoose2 tharris Iden-J_GluR C. elegans / WormBase
	A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. [My Copy] Molecular biology and evolution, Vol. 18, No. 5. (1 May 2001), pp. 691-699. by S. Whelan, N. Goldman posted to ancestral_reconstruction bioinformatics evolution by gisle on 2008-08-29 14:00:02 as along with 7 people calderonv BioNica michaelbarton bpb chrn ssgong gjuggler
	A solution for the best rotation to relate two sets of vectors [My Copy] Acta Crystallographica Section A, Vol. 32, No. 5. (September 1976), pp. 922-923. by W. Kabsch posted to protein_structure by gisle on 2008-08-29 09:39:49 as along with 3 people reyez pavanghatty rabio
	Atlas of protein sequence and structure [My Copy] Vol. 5 by M. O. Dayhoff posted to alignment mutations by gisle on 2008-08-29 08:58:16 as
	Amino acid substitution matrices from protein blocks. [My Copy] Proc Natl Acad Sci U S A, Vol. 89, No. 22. (15 November 1992), pp. 10915-10919. by S. Henikoff, J. G. Henikoff posted to alignment mutations by gisle on 2008-08-29 08:44:21 as along with 1 person mcbla
	Automatic generation of primary sequence patterns from sets of related protein sequences. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 87, No. 1. (January 1990), pp. 118-122. by R. F. Smith, T. F. Smith posted to alignment bioinformatics by gisle on 2008-08-29 08:38:10 as
	Protein contacts, inter-residue interactions and side-chain modelling [My Copy] Biochimie In Recent advances in complete genome analysis, Vol. 90, No. 4. (April 2008), pp. 626-639. by Guilhem Faure, Aurélie Bornot, Alexandre G. de Brevern posted to no-tag by gisle on 2008-08-29 08:16:34 as
	GROMACS: A message-passing parallel molecular dynamics implementation [My Copy] Computer Physics Communications, Vol. 91, No. 1-3. (02 September 1995), pp. 43-56. by H. Berendsen posted to molecular_dynamics by gisle on 2008-08-28 12:28:09 as along with 7 people trishul xiaoshijun janneb choonpeng ffranca tji robertvacha
	The Amber biomolecular simulation programs. [My Copy] Journal of computational chemistry, Vol. 26, No. 16. (December 2005), pp. 1668-1688. by David A. Case, Thomas E. Cheatham, Tom Darden, et al.Holger Gohlke, Ray Luo, Kenneth M. Merz, Alexey Onufriev, Carlos Simmerling, Bing Wang, Robert J. Woods posted to molecular_dynamics by gisle on 2008-08-28 12:27:20 as along with 18 people and 3 groups krapnik csrocha nickolay mmuecke flbarroso charris5 pavanghatty tahereh62 lna jwm ttjoseph xdeupi tovrstra bilab RamuAnandakrishnan IrinaMoreira adilson_mohr mikaellund Radiation_Damage Stressosome LabCompMed
	CHARMM: A program for macromolecular energy, minimization, and dynamics calculations [My Copy] Journal of Computational Chemistry, Vol. 4, No. 2. (1983), pp. 187-217. by Bernard R. Brooks, Robert E. Bruccoleri, Barry D. Olafson, David J. States, S. Swaminathan, Martin Karplus posted to molecular_dynamics by gisle on 2008-08-28 12:26:17 as along with 16 people ubcg08l flbarroso nickolay newton1234 kgutwin r2s2 rpetrenko oceanwind RamuAnandakrishnan tovrstra dfgreen Lombardo_7 dgront mmuecke rabio saravan
	GenBank. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 17-20. by D. A. Benson, I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, B. A. Rapp, D. L. Wheeler posted to database by gisle on 2008-08-28 12:12:13 as
	Psychrophilic microorganisms: challenges for life. [My Copy] EMBO Rep, Vol. 7, No. 4. (April 2006), pp. 385-389. by S. D'Amico, T. Collins, J. C. Marx, G. Feller, C. Gerday posted to enzyme_efficiency extremophiles psychrophiles by gisle on 2008-08-28 11:59:23 as along with 1 person gilda
	Psychrophilic enzymes: revisiting the thermodynamic parameters of activation may explain local flexibility. [My Copy] Biochimica et biophysica acta, Vol. 1543, No. 1. (30 November 2000), pp. 1-10. by T. Lonhienne, C. Gerday, G. Feller posted to extremophiles psychrophiles by gisle on 2008-08-28 11:57:01 as
	Ion pairs and their role in modulating stability of cold- and warm-active uracil DNA glycosylase [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Magne Olufsen, Elena Papaleo, Arne O. Smalås, Bjørn O. Brandsdal posted to no-tag by gisle on 2008-08-28 09:46:05 as along with 2 people camster RamuAnandakrishnan
	Protein flexibility in psychrophilic and mesophilic trypsins. Evidence of evolutionary conservation of protein dynamics in trypsin-like serine-proteases. [My Copy] FEBS letters, Vol. 582, No. 6. (19 March 2008), pp. 1008-1018. by E. Papaleo, M. Pasi, L. Riccardi, I. Sambi, P. Fantucci, L. De Gioia posted to extremophiles molecular_dynamics by gisle on 2008-08-28 09:45:02 as
	Comparative structural analysis of psychrophilic and meso- and thermophilic enzymes. [My Copy] Proteins, Vol. 47, No. 2. (1 May 2002), pp. 236-249. by G. Gianese, F. Bossa, S. Pascarella posted to extremophiles prediction psychrophiles by gisle on 2008-08-28 09:37:21 as along with 1 person neils
	Cold adaptation of proteins. Purification, characterization, and sequence of the heat-labile subtilisin from the antarctic psychrophile Bacillus TA41. [My Copy] The Journal of biological chemistry, Vol. 269, No. 26. (1 July 1994), pp. 17448-17453. by S. Davail, G. Feller, E. Narinx, C. Gerday posted to extremophiles protein_structure by gisle on 2008-08-28 09:35:30 as
	Cold-adapted beta-galactosidase from the Antarctic psychrophile Pseudoalteromonas haloplanktis. [My Copy] Applied and environmental microbiology, Vol. 67, No. 4. (April 2001), pp. 1529-1535. by A. Hoyoux, I. Jennes, P. Dubois, et al.S. Genicot, F. Dubail, J. M. François, E. Baise, G. Feller, C. Gerday posted to enzyme_efficiency extrmophiles psychrophiles by gisle on 2008-08-28 09:28:13 as
	Reversible thermal unfolding of thermostable phosphoglycerate kinase. Thermostability associated with mean zero enthalpy change. [My Copy] Journal of molecular biology, Vol. 116, No. 3. (5 November 1977), pp. 429-442. by H. Nojima, A. Ikai, T. Oshima, H. Noda posted to proteinstability thermophiles thermostability by gisle on 2008-08-28 09:08:54 as
	Lessons in stability from thermophilic proteins. [My Copy] Protein science : a publication of the Protein Society, Vol. 15, No. 7. (July 2006), pp. 1569-1578. by A. Razvi, J. M. Scholtz posted to extremophiles proteinstability thermophiles thermostability by gisle on 2008-08-28 09:06:24 as
	Cold adaptation of a mesophilic subtilisin-like protease by laboratory evolution. [My Copy] The Journal of biological chemistry, Vol. 275, No. 41. (13 October 2000), pp. 31635-31640. by P. L. Wintrode, K. Miyazaki, F. H. Arnold posted to enzyme_efficiency extremophiles mutants psychrophiles by gisle on 2008-08-28 08:58:44 as
	A discussion of the solution for the best rotation to relate two sets of vectors [My Copy] Acta Crystallographica Section A, Vol. 34, No. 5. (Sep 1978), pp. 827-828. by W. Kabsch posted to no-tag by gisle on 2008-08-01 16:52:41 as along with 1 person rabio
	Introduction to protein structure, by Carl Branden and John Tooze. New York: Garland Publishing Company, 302 pages, $27.95 (paper), 1991 [My Copy] Proteins: Structure, Function, and Genetics, Vol. 12, No. 2. (1992), 200. by Robert J. Fletterick posted to protein_structure by gisle on 2008-07-21 16:18:34 as
	Structural Biology: Analysis of 'downhill' protein folding [My Copy] Nature, Vol. 445, No. 7129. (14 February 2007), pp. E14-E15. by Neil Ferguson, Timothy D. Sharpe, Christopher M. Johnson, Pamela J. Schartau, Alan R. Fersht posted to no-tag by gisle on 2008-03-05 10:11:56 as
	Estimating Free-Energy Barrier Heights for an Ultrafast Folding Protein from Calorimetric and Kinetic Data. [My Copy] J Phys Chem B (16 February 2008) by Raquel Godoy-Ruiz, Eric R. Henry, Jan Kubelka, et al.James Hofrichter, Victor Muñoz, Jose M. Sanchez-Ruiz, William A. Eaton posted to no-tag by gisle on 2008-03-05 10:11:40 as
	Experimental identification of downhill protein folding. [My Copy] Science, Vol. 298, No. 5601. (13 December 2002), pp. 2191-2195. by M. M. Garcia-Mira, M. Sadqi, N. Fischer, J. M. Sanchez-Ruiz, V. Muñoz posted to proteinstability protein_structure by gisle on 2008-03-05 10:03:49 as

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extremophiles	39
thermophiles	30
protein_structure	24
psychrophiles	19
proteinstability	13
bioinformatics	12
thermostability	11
thermodynamics	10
mutations	9
molecular_dynamics	7
ancestral_reconstruction	6
database	6
extrmophiles	6
alignment	4
prediction	4
protherm	4
enzyme_efficiency	3
saltbridges	3
dynamics	2
evolution	2
mutatants	2
mutatations	2
clustering	1
contacts	1
mutants	1
secondary_structure	1
systems-biology	1
webapp	1

gisle's library 121 articles Export

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