gjuggler's Goldman:N [25 articles] Export

Recent papers posted to gjuggler's library by the author Goldman:N. You can also see everyone's Goldman:N.

	Genomic DNA k-mer spectra: models and modalities [My Copy] Genome Biology, Vol. 10, No. 10. (2009), R108. by Benny Chor, David Horn, Nick Goldman, Yaron Levy, Tim Massingham posted to goldmanlab by gjuggler on 2009-10-08 11:05:49 as along with 5 people and 1 group heliopais dakelley djkt TRHvidsten medic0747 iSEEM
	Coevolving protein residues: maximum likelihood identification and relationship to structure. [My Copy] Journal of molecular biology, Vol. 287, No. 1. (19 March 1999), pp. 187-198. by D. D. Pollock, W. R. Taylor, N. Goldman posted to proteins by gjuggler on 2009-09-21 19:31:12 as along with 3 people mgomes nirfriedman pradiptaray
	Protein evolution with dependence among codons due to tertiary structure. [My Copy] Molecular biology and evolution, Vol. 20, No. 10. (1 October 2003), pp. 1692-1704. by Douglas M. Robinson, David T. Jones, Hirohisa Kishino, Nick Goldman, Jeffrey L. Thorne posted to phylogenetics by gjuggler on 2009-09-21 19:24:48 as along with 3 people penka redelings tale
	Detecting amino acid sites under positive selection and purifying selection. [My Copy] Genetics, Vol. 169, No. 3. (16 January 2005), pp. 1753-1762. by Tim Massingham, Nick Goldman posted to e-slr by gjuggler on 2009-01-22 17:29:09 as along with 6 people and 1 group MRCBIRD gwallau stevanspringer operon BioNica Natasha FAB-lab
	Evolutionary footprints of nucleosome positions in yeast. [My Copy] Trends in genetics : TIG, Vol. 24, No. 12. (24 October 2008), pp. 583-587. by S. Washietl, R. Machne, N. Goldman posted to goldmanlab by gjuggler on 2008-12-04 14:54:20 as along with 4 people bpcusack ilyashl gderwin djkt
	PASSML: combining evolutionary inference and protein secondary structure prediction [My Copy] Bioinformatics, Vol. 14, No. 8. (1 September 1998), pp. 726-733. by P. Lio, N. Goldman, J. L. Thorne, D. T. Jones3 posted to e-slr by gjuggler on 2008-12-01 12:04:31 as
	Models of Molecular Evolution and Phylogeny [My Copy] Genome Research, Vol. 8, No. 12. (1 December 1998), pp. 1233-1244. by P. Liò, N. Goldman posted to goldmanlab by gjuggler on 2008-12-01 10:59:14 as along with 5 people seb1 BioNica operon hdopazo timflutre
	Combining protein evolution and secondary structure. [My Copy] Mol Biol Evol, Vol. 13, No. 5. (May 1996), pp. 666-673. by J. L. Thorne, N. Goldman, D. T. Jones posted to goldmanlab by gjuggler on 2008-11-19 14:05:39 as along with 2 people chrn tale
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science In Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to goldmanlab by gjuggler on 2008-06-20 13:17:30 as along with 30 people and 3 groups dfdong memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome [My Copy] Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 760-774. by Elliott H. Margulies, Gregory M. Cooper, George Asimenos, et al.Daryl J. Thomas, Colin N. Dewey, Adam Siepel, Ewan Birney, Damian Keefe, Ariel S. Schwartz, Minmei Hou, James Taylor, Sergey Nikolaev, Juan, Ari Loytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, James B. Brown, Peter Bickel, Ian Holmes, James C. Mullikin, Abel U. Vidal, Benedict Paten, Eric A. Stone, Kate R. Rosenbloom, James W. Kent, Gerard G. Bouffard, Xiaobin Guan, Nancy F. Hansen, Jacquelyn R. Idol, Valerie V. Maduro, Baishali Maskeri, Jennifer C. Mcdowell, Morgan Park, Pamela J. Thomas, Alice C. Young, Robert W. Blakesley, Donna M. Muzny, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, Robert Fulton, Elaine R. Mardis, Richard K. Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin L. Toh, Eric S. Lander, Angie Hinrichs, Heather Trumbower, Hiram Clawson, Ann Zweig, Robert M. Kuhn, Galt Barber, Rachel Harte, Donna Karolchik, Matthew A. Field, Richard A. Moore, Carrie A. Matthewson, Jacqueline E. Schein, Marco A. Marra, Stylianos E. Antonarakis, Serafim Batzoglou, Nick Goldman, Ross Hardison, David Haussler, Webb Miller, Lior Pachter, Eric D. Green, Arend Sidow posted to alignment by gjuggler on 2008-03-19 18:40:29 as along with 11 people and 5 groups daveGerrard polivares timflutre aprasad dpollard dchughes AaronDarling djkt ghattem Garamonfok elfar BergmanLab Bioinformatics EisenLab G4ID Genetics-of-Gambling
	Simple diagnostic statistical tests of models for DNA substitution. [My Copy] J Mol Evol, Vol. 37, No. 6. (December 1993), pp. 650-661. by N. Goldman posted to goldmanlab nopdf by gjuggler on 2008-01-09 12:37:54 as
	Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation. [My Copy] Mol Biol Evol, Vol. 11, No. 2. (March 1994), pp. 316-324. by Z. Yang, N. Goldman, A. Friday posted to goldmanlab by gjuggler on 2008-01-09 12:36:21 as
	A codon-based model of nucleotide substitution for protein-coding DNA sequences [My Copy] Mol Biol Evol, Vol. 11, No. 5. (1 September 1994), pp. 725-736. by N. Goldman, Z. Yang posted to goldmanlab by gjuggler on 2008-01-09 12:35:52 as along with 6 people and 1 group MRCBIRD hdopazo usagi-kirin mingzhi AtoZ CharlesM BioinfoCIPF
	Codon-Substitution Models for Heterogeneous Selection Pressure at Amino Acid Sites [My Copy] Genetics, Vol. 155, No. 1. (1 May 2000), pp. 431-449. by Ziheng Yang, Rasmus Nielsen, Nick Goldman, A. M. Pedersen posted to e-slr goldmanlab by gjuggler on 2008-01-09 12:33:40 as along with 8 people druvus fernan BioNica Natasha dylan77 Garamonfok tale emptyhb
	A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. [My Copy] Molecular biology and evolution, Vol. 18, No. 5. (1 May 2001), pp. 691-699. by Simon Whelan, Nick Goldman posted to goldmanlab by gjuggler on 2008-01-09 12:32:47 as along with 7 people calderonv BioNica michaelbarton bpb chrn ssgong gisle
	Molecular phylogenetics: state-of-the-art methods for looking into the past. [My Copy] Trends Genet, Vol. 17, No. 5. (May 2001), pp. 262-272. by S. Whelan, P. Liò, N. Goldman posted to goldmanlab by gjuggler on 2008-01-09 12:32:33 as along with 1 person aprasad
	A novel use of equilibrium frequencies in models of sequence evolution. [My Copy] Mol Biol Evol, Vol. 19, No. 11. (November 2002), pp. 1821-1831. by N. Goldman, S. Whelan posted to goldmanlab by gjuggler on 2008-01-09 12:30:55 as
	Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. [My Copy] Genome Res, Vol. 13, No. 1. (January 2003), pp. 13-26. by R. C. Hardison, K. M. Roskin, S. Yang, et al.M. Diekhans, W. J. Kent, R. Weber, L. Elnitski, J. Li, M. O'Connor, D. Kolbe, S. Schwartz, T. S. Furey, S. Whelan, N. Goldman, A. Smit, W. Miller, F. Chiaromonte, D. Haussler posted to goldmanlab by gjuggler on 2008-01-09 12:29:47 as along with 2 people maximilianh timflutre
	Phylogenomics and bioinformatics of SARS-CoV. [My Copy] Trends Microbiol, Vol. 12, No. 3. (March 2004), pp. 106-111. by P. Liò, N. Goldman posted to goldmanlab by gjuggler on 2008-01-09 12:28:05 as
	Estimating the frequency of events that cause multiple-nucleotide changes. [My Copy] Genetics, Vol. 167, No. 4. (August 2004), pp. 2027-2043. by S. Whelan, N. Goldman posted to goldmanlab by gjuggler on 2008-01-09 12:27:35 as along with 2 people robsyme michaelbarton
	Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. [My Copy] Genetics, Vol. 168, No. 2. (1 October 2004), pp. 1041-1051. by Wendy S. Wong, Ziheng Yang, Nick Goldman, Rasmus Nielsen posted to goldmanlab by gjuggler on 2008-01-09 12:27:18 as along with 6 people katholt renewang BioNica Natasha timflutre CharlesM
	From The Cover: An algorithm for progressive multiple alignment of sequences with insertions [My Copy] PNAS, Vol. 102, No. 30. (26 July 2005), pp. 10557-10562. by Ari Loytynoja, Nick Goldman posted to goldmanlab by gjuggler on 2008-01-09 12:26:42 as along with 8 people and 1 group Thaverkamp BioNica federico_boschetti stevanspringer timflutre hpaces dgront bpcusack FAB-lab
	Variation in evolutionary processes at different codon positions. [My Copy] Mol Biol Evol, Vol. 24, No. 2. (February 2007), pp. 513-521. by L. Bofkin, N. Goldman posted to goldmanlab by gjuggler on 2008-01-09 12:25:43 as
	An Empirical Codon Model for Protein Sequence Evolution [My Copy] Mol Biol Evol, Vol. 24, No. 7. (1 July 2007), pp. 1464-1479. by Carolin Kosiol, Ian Holmes, Nick Goldman posted to goldmanlab by gjuggler on 2008-01-09 12:25:24 as along with 3 people aprasad BioNica cjeans
	Experimental design criteria in phylogenetics: where to add taxa. [My Copy] Syst Biol, Vol. 56, No. 4. (August 2007), pp. 609-622. by K. Geuten, T. Massingham, P. Darius, E. Smets, N. Goldman posted to goldmanlab nopdf by gjuggler on 2008-01-09 12:24:27 as along with 1 person akifumi

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gjuggler's Goldman:N [25 articles] Export

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