gjuggler's alignment [17 articles] Export

Recent papers added to gjuggler's library classified by the tag alignment. You can also see everyone's alignment.

	Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment [My Copy] Bioinformatics (4 December 2008), btn630. by Benedict Paten, Javier Herrero, Kathryn Beal, Ewan Birney posted to alignment by gjuggler on 2009-01-30 17:04:17 as along with 9 people BioNica guhjy dakelley semrich djkt rschulz birney operon druvus
	Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues. [My Copy] Nucleic acids research (4 December 2008) by Yue Lu, Sing-Hoi H. Sze posted to alignment by gjuggler on 2009-01-30 13:13:00 as along with 6 people n00c zwang zanexu dakelley nuin treangen
	Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs. [My Copy] Genome research, Vol. 18, No. 11. (10 October 2008), pp. 1814-1828. by Benedict Paten, Javier Herrero, Kathryn Beal, Stephen Fitzgerald, Ewan Birney posted to alignment by gjuggler on 2008-10-25 22:49:32 as along with 8 people gdb mhamada natstreet druvus davfre rschulz treangen Neeperando
	Genome-wide nucleotide-level mammalian ancestor reconstruction [My Copy] Genome Research, Vol. 18, No. 11. (10 October 2008), pp. 1829-1843. by Benedict Paten, Javier Herrero, Stephen Fitzgerald, et al.Kathryn Beal, Paul Flicek, Ian Holmes, Ewan Birney posted to alignment alngen by gjuggler on 2008-10-16 13:29:18 as along with 6 people gdb ilyashl mhamada rschulz Neeperando bpcusack
	An evolutionary model for maximum likelihood alignment of DNA sequences. [My Copy] Journal of molecular evolution, Vol. 33, No. 2. (August 1991), pp. 114-124. by J. L. Thorne, H. Kishino, J. Felsenstein posted to alignment by gjuggler on 2008-10-03 17:06:25 as along with 1 person timflutre
	Mango: multiple alignment with N gapped oligos. [My Copy] Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 521-541. by Z. Zhang, H. Lin, M. Li posted to alignment by gjuggler on 2008-08-08 11:00:43 as
	Uncertainty in homology inferences: assessing and improving genomic sequence alignment. [My Copy] Genome research, Vol. 18, No. 2. (1 February 2008), pp. 298-309. by Gerton Lunter, Andrea Rocco, Naila Mimouni, Andreas Heger, Alexandre Caldeira, Jotun Hein posted to alignment by gjuggler on 2008-05-29 11:16:00 as along with 8 people aprasad brant treangen djkt grahamc dandaman mailund AaronDarling
	Combining Statistical Alignment and Phylogenetic Footprinting to Detect Regulatory Elements. [My Copy] Bioinformatics (18 March 2008) by R. Satija, L. Pachter, J. Hein posted to alignment annotation by gjuggler on 2008-05-08 09:53:45 as along with 6 people jo_davies druvus eckart_bindewald Stew maximilianh Ema
	Multiple sequence alignment using partial order graphs [My Copy] Bioinformatics, Vol. 18, No. 3. (1 March 2002), pp. 452-464. by C. Lee, C. Grasso, M. F. Sharlow posted to alignment by gjuggler on 2008-03-31 14:28:50 as along with 9 people and 3 groups pimmy BioNica treangen Neeperando ana Cortel AbnerCYH azazello wenhan structural_bioinformatics Bioinformatics MBLAB
	Multiple DNA and protein sequence alignment based on segment-to-segment comparison [My Copy] Proceedings of the National Academy of Sciences, Vol. 93, No. 22. (29 October 1996), pp. 12098-12103. by Burkhard Morgenstern, Andreas Dress, Thomas Werner posted to alignment by gjuggler on 2008-03-31 09:35:14 as along with 3 people BioNica adijr newton1234
	The many faces of sequence alignment [My Copy] Brief Bioinform, Vol. 6, No. 1. (1 March 2005), pp. 6-22. by S. Batzoglou posted to alignment by gjuggler on 2008-03-31 09:31:56 as along with 11 people and 2 groups nuttpo druvus n00c pimmy timflutre BioNica treangen balajis dpollard sdvillal yoanjacquemin Bioinformatics EisenLab
	Multiple alignment by sequence annealing [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. e24-29. by S. Schwartz, Ariel, Pachter, Lior posted to alignment general by gjuggler on 2008-03-31 09:27:46 as along with 4 people nuin dakelley treangen druvus
	Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome [My Copy] Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 760-774. by Elliott H. Margulies, Gregory M. Cooper, George Asimenos, et al.Daryl J. Thomas, Colin N. Dewey, Adam Siepel, Ewan Birney, Damian Keefe, Ariel S. Schwartz, Minmei Hou, James Taylor, Sergey Nikolaev, Juan, Ari Loytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, James B. Brown, Peter Bickel, Ian Holmes, James C. Mullikin, Abel U. Vidal, Benedict Paten, Eric A. Stone, Kate R. Rosenbloom, James W. Kent, Gerard G. Bouffard, Xiaobin Guan, Nancy F. Hansen, Jacquelyn R. Idol, Valerie V. Maduro, Baishali Maskeri, Jennifer C. Mcdowell, Morgan Park, Pamela J. Thomas, Alice C. Young, Robert W. Blakesley, Donna M. Muzny, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, Robert Fulton, Elaine R. Mardis, Richard K. Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin L. Toh, Eric S. Lander, Angie Hinrichs, Heather Trumbower, Hiram Clawson, Ann Zweig, Robert M. Kuhn, Galt Barber, Rachel Harte, Donna Karolchik, Matthew A. Field, Richard A. Moore, Carrie A. Matthewson, Jacqueline E. Schein, Marco A. Marra, Stylianos E. Antonarakis, Serafim Batzoglou, Nick Goldman, Ross Hardison, David Haussler, Webb Miller, Lior Pachter, Eric D. Green, Arend Sidow posted to alignment by gjuggler on 2008-03-19 18:40:29 as along with 11 people and 5 groups daveGerrard polivares timflutre aprasad dpollard dchughes AaronDarling djkt ghattem Garamonfok elfar BergmanLab Bioinformatics EisenLab G4ID Genetics-of-Gambling
	Benchmarking tools for the alignment of functional noncoding DNA. [My Copy] BMC Bioinformatics, Vol. 5 (21 January 2004) by D. A. Pollard, C. M. Bergman, J. Stoye, S. E. Celniker, M. B. Eisen posted to alignment by gjuggler on 2008-03-19 18:34:36 as along with 6 people and 1 group cap1 indigoviolet lilou adijr idonaldson nklee EisenLab
	Differences between pair-wise and multi-sequence alignment methods affect vertebrate genome comparisons [My Copy] Trends in Genetics, Vol. 22, No. 4. (April 2006), pp. 187-193. by Elliott H. Margulies, Christina W. Chen, Eric D. Green posted to alignment by gjuggler on 2008-03-19 18:32:36 as along with 5 people and 2 groups aprasad treangen shirleym dchughes smount G4ID Genetics-of-Gambling
	Dynamic programming alignment accuracy. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 5, No. 3. (1998), pp. 493-504. by I. Holmes, R. Durbin posted to alignment nopdf by gjuggler on 2008-03-19 18:25:52 as along with 1 person maria_hauser
	Alignment Uncertainty and Genomic Analysis [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476. by Karen M. Wong, Marc A. Suchard, John P. Huelsenbeck posted to alignment by gjuggler on 2008-01-25 11:46:15 as along with 33 people and 2 groups Jporci operon walshtp darian ptrobajo friendpine skembel druvus treangen bpb aprasad dayjm pradiptaray dpollard tny djkt cjeans zwang lisa1 cactus biomcgary lilou dandaman renatomilani mclarenv youdon bpcusack guhjy jdelcampo adacier gracio timflutre jfr EisenLab microbiology_nijmegen

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tss-breadth	19
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proteins	7
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cyt-b	3
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sync-test	3
docs	2
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gjuggler's alignment [17 articles] Export

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