gjuggler's alngen [15 articles] Export

Recent papers added to gjuggler's library classified by the tag alngen. You can also see everyone's alngen.

	indel-Seq-Gen: A New Protein Family Simulator Incorporating Domains, Motifs, and Indels [My Copy] Molecular Biology and Evolution, Vol. 24, No. 3. (March 2007), pp. 640-649. by Strope, L. Cory, Scott, D. Stephen, Moriyama, N. Etsuko posted to alngen by gjuggler on 2009-01-31 12:13:43 as along with 1 person druvus
	Tools for simulating evolution of aligned genomic regions with integrated parameter estimation [My Copy] Genome Biology, Vol. 9, No. 10. (08 October 2008), R147. by Avinash Varadarajan, Robert K. Bradley, Ian H. Holmes posted to alngen by gjuggler on 2008-11-19 14:01:21 as along with 9 people inquil mhamada markusd nuin djkt treangen pengchy druvus aprasad
	Reconstructing large regions of an ancestral mammalian genome in silico [My Copy] Genome Res., Vol. 14, No. 12. (1 December 2004), pp. 2412-2423. by Mathieu Blanchette, Eric D. Green, Webb Miller, David Haussler posted to alngen by gjuggler on 2008-11-02 23:51:08 as along with 4 people aprasad balajis gisle Neeperando
	Empirical and structural models for insertions and deletions in the divergent evolution of proteins. [My Copy] J Mol Biol, Vol. 229, No. 4. (20 February 1993), pp. 1065-1082. by S. A. Benner, M. A. Cohen, G. H. Gonnet posted to alngen by gjuggler on 2008-10-16 14:24:51 as along with 4 people and 4 groups ana barry mattjb martainn structural_bioinformatics Bioinformatics ComplexAdaptiveSystems DSTO-CAS
	Exploring the Relationship between Sequence Similarity and Accurate Phylogenetic Trees [My Copy] Molecular Biology and Evolution, Vol. 23, No. 11. (November 2006), pp. 2090-2100. by Cantarel, L. Brandi, Morrison, G. Hilary, Pearson, William posted to alngen by gjuggler on 2008-10-16 14:22:17 as along with 4 people druvus treangen mblwhoi ArtemPankin
	Genome-wide nucleotide-level mammalian ancestor reconstruction [My Copy] Genome Research, Vol. 18, No. 11. (10 October 2008), pp. 1829-1843. by Benedict Paten, Javier Herrero, Stephen Fitzgerald, et al.Kathryn Beal, Paul Flicek, Ian Holmes, Ewan Birney posted to alignment alngen by gjuggler on 2008-10-16 13:29:18 as along with 6 people gdb ilyashl mhamada rschulz Neeperando bpcusack
	The accuracy of several multiple sequence alignment programs for proteins [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (24 October 2006), 471. by Paulo A. S. Nuin, Zhuozhi Wang, Elisabeth R. M. Tillier posted to alngen by gjuggler on 2008-10-16 13:06:42 as along with 11 people torfinnnome natstreet BioNica daforerog druvus treangen winterschlaefer viktor21614 tny plofje rabio
	Exact and heuristic algorithms for the Indel Maximum Likelihood Problem. [My Copy] J Comput Biol, Vol. 14, No. 4. (May 2007), pp. 446-461. by A. B. Diallo, V. Makarenkov, M. Blanchette posted to alngen by gjuggler on 2008-10-16 11:54:38 as along with 2 people timflutre aprasad
	MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (08 June 2006), 292. by Jun Wang, Peter D. Keightley, Toby Johnson posted to alngen by gjuggler on 2008-10-16 11:26:12 as along with 6 people and 1 group timflutre druvus Ayest dpollard papamicd bozdagd EisenLab
	Indelign: a probabilistic framework for annotation of insertions and deletions in a multiple alignment [My Copy] Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 289-297. by Jaebum Kim, Saurabh Sinha posted to alngen by gjuggler on 2008-10-16 11:25:53 as along with 4 people and 1 group timflutre druvus aprasad indigoviolet EisenLab
	DNA assembly with gaps (Dawg): simulating sequence evolution. [My Copy] Bioinformatics, Vol. 21 Suppl 3 (1 November 2005) by R. A. Cartwright posted to alngen tac-1 by gjuggler on 2008-09-26 16:34:17 as along with 2 people timflutre aprasad
	SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Andy Pang, Andrew Smith, Paulo Nuin, Elisabeth Tillier posted to alngen indels by gjuggler on 2008-09-22 14:46:44 as along with 2 people pansapiens martainn
	Rose: generating sequence families. [My Copy] Bioinformatics (Oxford, England), Vol. 14, No. 2. (1 March 1998), pp. 157-163. by J. Stoye, D. Evers, F. Meyer posted to alngen by gjuggler on 2008-09-09 12:26:23 as along with 3 people and 1 group hryk djkt adijr iSEEM
	How Well Does the HoT Score Reflect Sequence Alignment Accuracy? [My Copy] Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1576-1580. by Barry G. Hall posted to alngen by gjuggler on 2008-09-09 12:11:25 as along with 6 people and 1 group druvus treangen nuin bpcusack stajich cabbagesofdoom Mycology
	Simulating DNA coding sequence evolution with EvolveAGene 3 [My Copy] Mol Biol Evol (12 January 2008), msn008. by Barry G. Hall posted to alngen by gjuggler on 2008-09-09 12:08:06 as along with 5 people operon aprasad zwang friendpine adacier

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e-slr	109
general	44
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phylowidget	23
palindromes	22
isochores	21
nopdf	21
08-smbe	19
test	19
tss-breadth	19
tss	18
alignment	17
alngen	15
dupldiv	15
mutation	14
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ultraconserved	11
indels	10
annotation	9
mutsel	9
tac-1	8
proteins	7
evo-rate	6
pseudogenes	5
books	4
bp2009	4
visualization	4
cyt-b	3
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sync-test	3
docs	2
epidemiology	2
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tss-gauss	2
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gjuggler's alngen [15 articles] Export

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