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gpappas's library [31 articles]

Recent papers added to gpappas's library.
  • High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Evandro Novaes, Derek Drost, William Farmerie, Georgios Pappas, Dario Grattapaglia, Ronald Sederoff, Matias Kirst
    posted to eucalyptus est 454 by gpappas on 2008-06-30 15:38:40 as ****
  • CAP3: A DNA Sequence Assembly Program
    Genome Res., Vol. 9, No. 9. (1 September 1999), pp. 868-877.
    by Xiaoqiu Huang, Anup Madan
    posted to software by gpappas on 2008-05-16 00:31:41 as **
  • BLAT--the BLAST-like alignment tool.
    Genome Res, Vol. 12, No. 4. (April 2002), pp. 656-664.
    by WJ Kent
    posted to software by gpappas on 2008-05-16 00:03:49 as ** along with 19 people and 1 group bozdagd talponer operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz inesdesantiago yoanjacquemin EisenLab
  • Multi-objective Genetic Algorithm Based Clustering Approach and Its Application to Gene Expression Data
    Advances in Information Systems (2005), pp. 451-461.
    by Tansel Özyer, Yimin Liu, Reda Alhajj, Ken Barker
    posted to statistics sage expression by gpappas on 2008-05-12 01:38:20 as **
  • Tag-based approaches for transcriptome research and genome annotation
    Nature Methods, Vol. 2, No. 7., pp. 495-502.
    by Matthias Harbers, Piero Carninci
    posted to sage review by gpappas on 2008-05-05 00:40:57 as ** along with 1 person jyuh
  • Clustering analysis of SAGE data using a Poisson approach
    Genome Biology, Vol. 5, No. 7. (2004)
    by Li Cai, Haiyan Huang, Seth Blackshaw, Jun Liu, Connie Cepko, Wing Wong
    posted to statistics sage clustering by gpappas on 2008-05-05 00:36:12 as **
  • Accessing and distributing EMBL data using CORBA (common object request broker architecture).
    Genome Biol, Vol. 1, No. 5. (2000)
    by L Wang, P Rodriguez-Tomé, N Redaschi, P McNeil, A Robinson, P Lijnzaad
    posted to corba databases dils_2008 by gpappas on 2008-02-27 22:50:29 as **
  • A general approach to single-nucleotide polymorphism discovery.
    Nat Genet, Vol. 23, No. 4. (December 1999), pp. 452-456.
    by GT Marth, I Korf, MD Yandell, RT Yeh, Z Gu, H Zakeri, NO Stitziel, L Hillier, PY Kwok, WR Gish
    posted to dils_2008 polybayes snp by gpappas on 2008-02-27 22:07:14 as ** along with 3 people and 1 group farhat Ayest azazello gatech-compgenomics
  • Genetic variation and recombination of RdRp and HSP 70h genes of Citrus tristeza virus isolates from orange trees showing symptoms of citrus sudden death disease
    Virology Journal, Vol. 5 (16 January 2008), 9.
    by Clarissa PC Gomes, Tatsuya Nagata, Waldir C de Jesus, Carlos R Borges, Georgios J Pappas, Darren P Martin
    posted to citrus_sudden_death ctv georgios by gpappas on 2008-02-08 21:32:16 as **
  • Accuracy and quality of massively-parallel DNA pyrosequencing
    Genome Biology, Vol. 8 (20 July 2007), R143.
    by Susan M Huse, Julie A Huber, Hilary G Morrison, Mitchell L Sogin, David M Welch
    posted to comparative_genomics by gpappas on 2008-02-01 19:21:23 as ** along with 7 people and 3 groups Olaf_Ilzins jmeppley mblwhoi grahamc azazello GustavoLacerda blobbybirdman Bioinformatics ParkinsonLab_at_MaRS gatech-compgenomics
  • A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sorghum
    Nature Genetics, Vol. 39, No. 9. (26 August 2007), pp. 1156-1161.
    by Jurandir V Magalhaes, Jiping Liu, Claudia T Guimarães, Ubiraci GP Lana, Vera MC Alves, Yi-Hong Wang, Robert E Schaffert, Owen A Hoekenga, Miguel A Piñeros, Jon E Shaff, Patricia E Klein, Newton P Carneiro, Cintia M Coelho, Harold N Trick, Leon V Kochian
    posted to cnpq_transposon jurandir mite sorghum by gpappas on 2008-01-31 12:11:31 as ** along with 1 person viktor21614
  • Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize.
    Nat Genet (31 July 2005)
    by Michele Morgante, Stephan Brunner, Giorgio Pea, Kevin Fengler, Andrea Zuccolo, Antoni Rafalski
    posted to cnpq_transposon helitrons by gpappas on 2008-01-31 12:03:26 as ** along with 3 people and 2 groups ushishir bsmagic ArtemPankin Bioinformatics bioinplant
  • Origin and evolution of human microRNAs from transposable elements.
    Genetics (15 April 2007)
    by Jittima Piriyapongsa, Leonardo Mariño-Ramírez, I King K Jordan
    posted to mirna transposons by gpappas on 2008-01-31 11:55:22 as ** along with 6 people and 5 groups tardigrade andersbj dchughes mtagaya cisevol emptyhb microRNA G4ID Genetics-of-Gambling cis-regulatory-evolution BergmanLab
  • Rolling-circle transposons in eukaryotes.
    Proc Natl Acad Sci U S A, Vol. 98, No. 15. (17 July 2001), pp. 8714-8719.
    by VV Kapitonov, J Jurka
    posted to cnpq_transposon helitrons by gpappas on 2008-01-31 11:40:59 as **
  • Conserved eukaryotic transposable elements and the evolution of gene regulation.
    Cell Mol Life Sci (20 November 2007)
    by J Jurka
    posted to cnpq_transposon review transposons by gpappas on 2008-01-31 11:39:17 as ** along with 5 people and 2 groups dchughes Stew maximilianh cisevol idonaldson cis-regulatory-evolution BergmanLab
  • Helitrons on a roll: eukaryotic rolling-circle transposons.
    Trends Genet, Vol. 23, No. 10. (October 2007), pp. 521-529.
    by VV Kapitonov, J Jurka
    posted to cnpq_transposon helitrons by gpappas on 2008-01-31 11:38:42 as **
  • Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes.
    Gene, Vol. 311 (5 June 2003), pp. 1-11.
    by JM Casacuberta, N Santiago
    posted to cnpq_transposon ltr mite review transposons by gpappas on 2008-01-30 19:47:52 as ** along with 2 people and 1 group saru cisevol BergmanLab
  • Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs).
    Curr Opin Plant Biol, Vol. 7, No. 2. (April 2004), pp. 115-119.
    by N Jiang, C Feschotte, X Zhang, SR Wessler
    posted to cnpq_transposon mite review transposons by gpappas on 2008-01-30 19:46:10 as **
  • Analysis of non-TIR NBS-LRR resistance gene analogs in Musa acuminata Colla: Isolation, RFLP marker development, and physical mapping
    BMC Plant Biology, Vol. 8, No. 1. (2008)
    by Robert Miller, David Bertioli, Franc Baurens, Candice Santos, Paulo Alves, Natalia Martins, Roberto Togawa, Manoel Souza, Georgios Pappas
    posted to georgios musa rga by gpappas on 2008-01-30 18:24:18 as **
  • The necessary junk: new functions for transposable elements.
    Hum Mol Genet, Vol. 16 Spec No 2 (15 October 2007)
    by AR Muotri, MC Marchetto, NG Coufal, FH Gage
    posted to cnpq_transposon review transposons by gpappas on 2008-01-30 17:47:11 as ** along with 2 people and 2 groups ArtemPankin RaquelSL Khavkin's lab BergmanLab
  • Insights into the Musa genome: syntenic relationships to rice and between Musa species
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Magali Lescot, Pietro Piffanelli, Ana Ciampi, Manuel Ruiz, Guillaume Blanc, Jim L Mack, Felipe da Silva, Candice Santos, Angelique D'Hont, Olivier Garsmeur, Alberto Vilarinhos, Hiroyuki Kanamori, Takashi Matsumoto, Catherine Ronning, Foo Cheung, Brian Haas, Ryan Althoff, Tammy Arbogast, Erin Hine, Georgios Pappas, Takuji Sasaki, Manoel Souza, Robert Miller, Jean C Glaszmann, Chris Town
    posted to bac georgios musa by gpappas on 2008-01-30 14:31:44 as read along with 1 person dandaman
  • The significance of digital gene expression profiles.
    Genome Res, Vol. 7, No. 10. (October 1997), pp. 986-995.
    by S Audic, JM Claverie
    posted to cnpq_transposon ddd differential est expression by gpappas on 2008-01-30 14:17:48 as **
  • Frequencies of Ty1- copia and Ty3- gypsy retroelements within the Triticeae EST databases.
    Theor Appl Genet, Vol. 104, No. 5. (April 2002), pp. 840-844.
    by V. Echenique, B. Stamova, P. Wolters, G. Lazo, L. Carollo, J. Dubcovsky
    posted to cnpq_transposon by gpappas on 2008-01-30 13:52:18 as **
  • Human cis natural antisense transcripts initiated by transposable elements.
    Trends Genet (11 January 2008)
    by Andrew B B Conley, Wolfgang J J Miller, I King K Jordan
    posted to cnpq_transposon by gpappas on 2008-01-30 13:37:20 as ** along with 6 people and 2 groups balicea dchughes sebastien_vigneau timflutre cisevol yoanjacquemin cis-regulatory-evolution BergmanLab
  • Which transposable elements are active in the human genome?
    Trends Genet, Vol. 23, No. 4. (April 2007), pp. 183-191.
    by RE Mills, EA Bennett, RC Iskow, SE Devine
    posted to cnpq_transposon by gpappas on 2008-01-30 13:36:11 as ** along with 4 people and 1 group bpb N0131826 cisevol yoanjacquemin BergmanLab
  • Ancient Exaptation of a CORE-SINE Retroposon into a Highly Conserved Mammalian Neuronal Enhancer of the Proopiomelanocortin Gene.
    PLoS Genet, Vol. 3, No. 10. (5 October 2007)
    by Andrea M M Santangelo, Flávio S J S de Souza, Lucía F F Franchini, Viviana F F Bumaschny, Malcolm J J Low, Marcelo Rubinstein
    posted to cnpq_transposon by gpappas on 2008-01-30 13:35:24 as ** along with 1 person and 2 groups cisevol cis-regulatory-evolution BergmanLab
  • Discovering and detecting transposable elements in genome sequences.
    Brief Bioinform (10 October 2007)
    by Casey M M Bergman, Hadi Quesneville
    posted to cnpq_transposon by gpappas on 2008-01-30 13:34:13 as ** along with 9 people and 2 groups pradiptaray dpollard timflutre GustavoLacerda cabbagezs maximilianh cisevol urgi yoanjacquemin EisenLab BergmanLab
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