grahamc's domains [25 articles] Export

Recent papers added to grahamc's library classified by the tag domains. You can also see everyone's domains.

	Universal features in the genome-level evolution of protein domains. [My Copy] Genome biology, Vol. 10, No. 1. (30 January 2009), R12. by Marco Cosentino Lagomarsino, Alessandro L. Sellerio, Philip D. Heijning, Bruno Bassetti posted to domain domains genome_evolution network_biology network_properties network_topology by grahamc on 2009-02-09 17:54:24 as along with 7 people docv zwang phoenixzxl djkt idoerg VGreiff pawelszczesny
	A Specificity Map for the PDZ Domain Family [My Copy] PLoS Biology, Vol. 6, No. 9. (1 September 2008), e239. by Raffi Tonikian, Yingnan Zhang, Stephen L. Sazinsky, et al.Bridget Currell, Jung-Hua Yeh, Boris Reva, Heike A. Held, Brent A. Appleton, Marie Evangelista, Yan Wu, Xiaofeng Xin, Andrew C. Chan, Somasekar Seshagiri, Laurence A. Lasky, Chris Sander, Charles Boone, Gary D. Bader, Sachdev S. Sidhu posted to binding_domains domains interactions protein-protein by grahamc on 2008-11-27 05:14:46 as along with 6 people and 3 groups kgutwin balicea markchen zwang cabbagesofdoom barry structural_bioinformatics McCammon Bioinformatics
	Structural basis of sequence-specific collagen recognition by SPARC. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 47. (25 November 2008), pp. 18273-18277. by E. Hohenester, T. Sasaki, C. Giudici, R. W. Farndale, H. P. Bächinger posted to collagen domains ecm interactions by grahamc on 2008-11-27 04:50:54 as
	Impacts of protein-protein interaction domains on organism and network complexityPPI domains and organism/network complexity. [My Copy] Genome research (7 August 2008) by Kai Xia, Zheng Fu, Lei Hou, Jing-Dong J D. Han posted to domains interactions protein-protein by grahamc on 2008-09-03 22:28:41 as along with 2 people kluck bpcusack
	A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis [My Copy] Cell, Vol. 134, No. 3. (8 August 2008), pp. 534-545. by Mike Boxem, Zoltan Maliga, Niels Klitgord, et al.Na Li, Irma Lemmens, Miyeko Mana, Lorenzo de Lichtervelde, Joram D. Mul, Diederik van de Peut, Maxime Devos, Nicolas Simonis, Muhammed A. Yildirim, Murat Cokol, Huey-Ling Kao, Anne-Sophie de Smet, Haidong Wang, Anne-Lore Schlaitz, Tong Hao, Stuart Milstein, Changyu Fan, Mike Tipsword, Kevin Drew, Matilde Galli, Kahn Rhrissorrakrai, David Drechsel, Daphne Koller, Frederick P. Roth, Lilia M. Iakoucheva, Keith A. Dunker, Richard Bonneau, Kristin C. Gunsalus, David E. Hill, Fabio Piano, Jan Tavernier, Sander van den Heuvel, Anthony A. Hyman, Marc Vidal posted to domains interactions model_organisms prediction protein-protein by grahamc on 2008-09-03 21:56:59 as along with 3 people cerca phoenixzxl zwang
	Integrating Expression Data with Domain Interaction Networks [My Copy] Bioinformatics (19 August 2008), btn437. by Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht posted to cytoscape domains interactions protein-protein by grahamc on 2008-08-28 00:28:27 as along with 7 people chad_davis jfr guhjy zwang barriot druvus zimbo1
	Protein-protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: implications for docking. [My Copy] J Mol Biol, Vol. 344, No. 3. (26 November 2004), pp. 781-795. by X. Li, O. Keskin, B. Ma, R. Nussinov, J. Liang posted to domains interactions protein-protein by grahamc on 2008-03-28 17:12:28 as along with 10 people and 2 groups barry baaden bicko nickolay j3xucite bluvsh1 xz Evangelia ladab paolomarcatili structural_bioinformatics Bioinformatics
	Optimization of specificity in a cellular protein interaction network by negative selection. [My Copy] Nature, Vol. 426, No. 6967. (11 December 2003), pp. 676-680. by A. Zarrinpar, S. H. Park, W. A. Lim posted to domains interactions protein_evolution protein-protein by grahamc on 2008-03-28 17:01:55 as along with 4 people and 2 groups barry cjeans paolomarcatili phoenixzxl structural_bioinformatics Bioinformatics
	Evolution of protein domain promiscuity in eukaryotes [My Copy] Genome Res. (29 January 2008), gr.6943508. by Malay K. Basu, Liran Carmel, Igor B. Rogozin, Eugene V. Koonin posted to domain domains evolution interactions protein-protein by grahamc on 2008-03-26 00:32:23 as along with 10 people swp09 druvus kshameer saket cmzmasek michC neils zwang carlk dchughes
	Domain structure and organisation in extracellular matrix proteins. [My Copy] Matrix Biol, Vol. 21, No. 2. (March 2002), pp. 115-128. by E. Hohenester, J. Engel posted to domains ecm by grahamc on 2007-12-19 19:41:29 as
	Structure and distribution of modules in extracellular proteins. [My Copy] Q Rev Biophys, Vol. 29, No. 2. (May 1996), pp. 119-167. by P. Bork, A. K. Downing, B. Kieffer, I. D. Campbell posted to domains ecm by grahamc on 2007-12-19 19:36:22 as along with 1 person choonpeng
	The Modular Organization of Domain Structures: Insights into Protein–Protein Binding [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239. by Del, Pablo Carbonell posted to domain domains interactions methods protein-protein by grahamc on 2007-12-15 03:33:33 as along with 9 people bicko chad_davis choonpeng cjeans zwang niallhaslam biehl marti carlk
	A computational strategy for the prediction of functional linear peptide motifs in proteins. [My Copy] Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3297-3303. by H. Dinkel, H. Sticht posted to domain domains motifs proteomics by grahamc on 2007-12-14 03:51:43 as
	Protein-protein interaction hotspots carved into sequences. [My Copy] PLoS computational biology, Vol. 3, No. 7. (13 July 2007) by Yanay Ofran, Burkhard Rost posted to domains interactions methods protein-protein tools by grahamc on 2007-07-25 20:44:10 as along with 9 people and 2 groups superpyrin qluo bicko dchughes cjeans zwang Jporci Pao-Yang higueruelo G4ID Genetics-of-Gambling
	High-throughput identification of Interacting Protein-Protein Binding Sites [My Copy] BMC Bioinformatics, Vol. 8 (27 June 2007), 223. by Jo-Lan Chung, Wei Wang, Philip E. Bourne posted to domains interactions methods protein-protein tools by grahamc on 2007-07-09 23:18:48 as along with 3 people bicko zwang Evangelia
	Interaction-Site Prediction for Protein Complexes: a Critical Assessment. [My Copy] Bioinformatics (22 June 2007) by Huan-Xiang X. Zhou, Sanbo Qin posted to domains interactions protein-protein review by grahamc on 2007-07-09 23:02:40 as
	Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions. [My Copy] Journal of molecular biology, Vol. 362, No. 4. (29 September 2006), pp. 861-875. by R. Jothi, P. F. Cherukuri, A. Tasneem, T. M. Przytycka posted to domains interactions protein-protein by grahamc on 2007-06-18 18:22:15 as along with 5 people chica swp09 marti choonpeng iris_2001
	A domain-based approach to predict protein-protein interactions [My Copy] BMC Bioinformatics, Vol. 8 (13 June 2007), 199. by Mudita Singhal, Haluk Resat posted to domains interactions methods protein-protein tools by grahamc on 2007-06-18 17:03:27 as along with 3 people and 1 group yas phoenixzxl carlk T_lab
	The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs). [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 16. (15 August 2007), pp. 2129-2138. by Vachiranee Limviphuvadh, Seigo Tanaka, Susumu Goto, Kunihiro Ueda, Minoru Kanehisa posted to disease domains interactions protein-protein systems_biology by grahamc on 2007-06-18 16:19:57 as along with 2 people zwang carlk
	Molecular modeling of protein-glycosaminoglycan interactions. [My Copy] Arteriosclerosis, Vol. 9, No. 1. (b 1989), pp. 21-32. by A. D. Cardin, H. J. Weintraub posted to domains interactions protein-protein by grahamc on 2007-02-28 18:16:47 as
	SCOOP: A simple method for identification of novel protein superfamily relationships. [My Copy] Bioinformatics (3 February 2007) by Alex Bateman, Robert D D. Finn posted to algorithm domains motifs by grahamc on 2007-02-16 03:53:15 as
	Evolutionary conservation of domain-domain interactions [My Copy] Genome Biology, Vol. 7 (21 December 2006), R125. by Zohar Itzhaki, Eyal Akiva, Yael Altuvia, Hanah Margalit posted to protein-protein interactions domains by grahamc on 2007-01-23 00:25:22 as along with 4 people and 1 group thegoose2 tharris winterschlaefer phoenixzxl C. elegans / WormBase
	DASS: efficient discovery and p-value calculation of substructures in unordered data. [My Copy] Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 77-83. by J. Hollunder, M. Friedel, A. Beyer, C. T. Workman, T. Wilhelm posted to pattern_recognition domains by grahamc on 2007-01-20 20:16:21 as
	The N-terminal A Domain of Fibronectin-binding Proteins A and B Promotes Adhesion of Staphylococcus aureus to Elastin [My Copy] J. Biol. Chem., Vol. 279, No. 37. (10 September 2004), pp. 38433-38440. by Fiona M. Roche, Robert Downer, Fiona Keane, Pietro Speziale, Pyong W. Park, Timothy J. Foster posted to domains elastin by grahamc on 2007-01-04 04:36:34 as along with 1 person amccarthy
	Domains in Tropoelastin That Mediate Elastin Deposition in Vitro and in Vivo [My Copy] J. Biol. Chem., Vol. 278, No. 20. (9 May 2003), pp. 18491-18498. by Beth A. Kozel, Hiroshi Wachi, Elaine C. Davis, Robert P. Mecham posted to domains elastin by grahamc on 2007-01-04 04:18:52 as

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interactions	169
protein-protein	143
methods	78
synthetic_biology	72
tools	67
evolution	64
ecm	56
network_biology	53
prediction	46
network_topology	33
human	32
bioinformatics	29
data_integration	26
domains	25
network_properties	25
disease	21
genomics	21
elastin	20
igem	20
database	19
subcellular_location	19
proteomics	18
metabolism	17
motifs	17
comparative_genomics	16
systems_biology	16
algorithm	15
elastomer	15
function_prediction	15
statistics	15
network_statistics	14
sequencing	14
domain	13
gene_ontology	13
review	13
yeast	13
model_organisms	10
self-assembly	10
collagen	9
modeling	9
network_confidence	9
clustering_methods	8
tissue_specific_gene_expression	8
algorithms	7
cytoscape	7
matrix_architecture	7
network_alignment	7
protein_evolution	7
annotation	6
clustering	6
pattern_recognition	6
phenotype	6
protein_complexes	6
transmembrane_prediction	6
bio_fuel	5
functional_modules	5
interaction	5
network_comparison	5
post_translational_modification	5
alignment	4
biological_networks	4
ecm_remodeling	4
ecoli	4
expression	4
gene_expression	4
genomes	4
go_terms	4
graph_theory	4
matrix_remodeling	4
metabolic_channeling	4
minimal_cell	4
protein_protein_interactions	4
signaling	4
signal_peptide	4
two-hybrid	4
visualization	4
wound_repair	4
angiogenesis	3
betweenness	3
biology	3
bone_homeostasis	3
choanoflagellates	3
co-expression	3
development	3
function	3
functional_annotation	3
gene_identifiers	3
genome_evolution	3
mass_spec	3
microarray	3
network_visualization	3
orthologues	3
pathway_modeling	3
phylogenetic_analysis	3
protein	3
scientific_communication	3
simulation	3
structure	3
vertebrate_genomics	3
accuracy	2
aging	2
assembly	2
binding_domains	2
cancer	2
cardiac	2
centrality	2
co-localization	2
epigenetics	2
evaluation	2
fibroblast	2
hydra	2
integrin	2
interologues	2
long_pcr	2
matrix_mmp	2
metazoa	2
morphology	2
pattern_development	2
publishing	2
scoring	2
search	2
secretome	2
selection	2
sequence_conservation	2
sequenced_organisms	2
software	2
specialty-network	2
sponges	2
standards	2
synteny	2
text_mining	2
transcription_factors	2
translation	2
aging_network	1
alternative_splicing	1
ancestral_genomes	1
ancient_dna	1
aorta	1
api	1
assessment	1
bacteria	1
biofuels	1
biological_computation	1
bladder	1
bone_mineralization	1
bone_regulatory_network	1
capillary_formation	1
carbohydrate	1
career_science	1
cell_migration	1
cell_wall	1
cloning	1
cnidaria	1
curation	1
cysteine-labeling	1
cytoskeleton	1
decorin	1
diatoms	1
disease_classification	1
domain-domain	1
early_life	1
e_coli	1
encode_project	1
engineered_proteins	1
enrichment	1
ethics	1
exobiology	1
extracellular	1
extracellular_proteins	1
fibrillin	1
fibrin	1
fibulin	1
functional_maps	1
fuzzy_logic	1
gene	1
gene_environment	1
gene_families	1
gene_loss	1
genome_annotation	1
glycomics	1
gold_standards	1
hemostasis	1
hexapoda	1
homologue_detection	1
hydrophobic_polymerization	1
imaging	1
induction	1
interaction_site	1
introns	1
java	1
kidney_development	1
learning	1
lumier	1
machine_learning	1
mammalian	1
mars	1
memory	1
mesh_terms	1
metadata	1
micro_rna	1
microscopy	1
modularity	1
molecular_dynamics	1
mouse	1
mouse_development	1
multicellularity	1
net	1
network_analysis	1
neuroplasticity	1
normal_vs_disease	1
ontologies	1
organogenesis	1
orthologous	1
phage_display	1
plasmodium	1
poster	1
protein_dynamics	1
protein_features	1
protein_folding	1
protein_function	1
protein_interactions	1
protein_scaffolds	1
quality	1
reliability	1
scale-free	1
secondary_structure	1
silkworm	1
systems	1
tension	1
tissue	1
uniprot	1
validation	1
vasculogenesis	1
visualization_system	1
zebrafish	1

grahamc's domains [25 articles] Export

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