grahamc's prediction [46 articles] Export

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	Geometric De-noising of Protein-Protein Interaction Networks [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (7 August 2009), e1000454. by Oleksii Kuchaiev, Marija Rašajski, Desmond J. Higham, Nataša Pržulj posted to protein-protein prediction methods interaction human assessment by grahamc on 2009-08-16 03:23:32 as along with 8 people and 1 group CorinYeats klexa tmmurali roys zwang robfsouza phoenixzxl kiekyon Orengo Group Journal Picks
	Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (21 July 2009), 228. by Kimberly Van Auken, Joshua Jaffery, Juancarlos Chan, Hans-Michael M. Müller, Paul W. Sternberg posted to subcellular_location prediction methods gene_ontology curation by grahamc on 2009-08-16 02:55:05 as along with 3 people and 2 groups kshameer tharris jvb C. elegans / WormBase Journal picks
	Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2492-2499. by Mei Liu, Xue-wen Chen, Raja Jothi posted to prediction interactions domain-domain by grahamc on 2009-08-16 02:34:35 as along with 3 people zwang robfsouza phoenixzxl
	A core-attachment based method to detect protein complexes in PPI networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 169. by Min Wu, Xiaoli Li, Chee K. Kwoh, See K. Ng posted to network_biology prediction protein_complexes by grahamc on 2009-06-15 05:24:47 as along with 2 people chocolate2009 reyez
	Network-based prediction of metabolic enzymes' subcellular localization [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i247-1252. by Shira Mintz-Oron, Asaph Aharoni, Eytan Ruppin, Tomer Shlomi posted to metabolism methods prediction subcellular_location by grahamc on 2009-06-15 05:18:12 as along with 1 person kshameer
	Validating subcellular localization prediction tools with mycobacterial proteins [My Copy] BMC Bioinformatics, Vol. 10 (07 May 2009), 134. by Daniel, Manuel A. Patarroyo posted to accuracy prediction subcellular_location tools by grahamc on 2009-05-26 03:25:50 as
	Protein-protein interaction based on pairwise similarity [My Copy] BMC Bioinformatics, Vol. 10 (17 May 2009), 150. by Nazar, Piers Campbell posted to interactions methods prediction protein-protein by grahamc on 2009-05-26 03:07:42 as along with 4 people chocolate2009 renatomilani reyez barriot
	Disease candidate gene identification and prioritization using protein interaction networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 73. by Jing Chen, Bruce Aronow, Anil Jegga posted to bioinformatics disease interactions methods prediction protein-protein by grahamc on 2009-03-01 17:27:47 as along with 12 people and 1 group carlk zufar guhjy jfr daforerog saket provero mitko neils barriot renatomilani rjazwiec Bioinformatics
	Enumeration of condition-dependent dense modules in protein interaction networks [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 933-940. by Elisabeth Georgii, Sabine Dietmann, Takeaki Uno, Philipp Pagel, Koji Tsuda posted to functional_modules methods network_topology prediction tools by grahamc on 2009-02-23 18:40:01 as along with 5 people carlk hryk eesruiz imina mhamada
	A factor graph nested effects model to identify networks from genetic perturbations. [My Copy] PLoS computational biology, Vol. 5, No. 1. (January 2009) by Charles J. Vaske, Carrie House, Truong Luu, et al.Bryan Frank, Chen-Hsiang H. Yeang, Norman H. Lee, Joshua M. Stuart posted to disease human methods network_biology prediction by grahamc on 2009-02-02 18:33:46 as along with 2 people ptrobajo psychorav
	Prediction of Protein–Protein Interaction Sites in Sequences and 3D Structures by Random Forests [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (30 January 2009), e1000278. by Mile Šikić, Sanja Tomić, Kristian Vlahoviček posted to interaction_site prediction protein by grahamc on 2009-02-02 18:29:16 as along with 7 people and 2 groups roys svozil marti barry higueruelo kshameer neils structural_bioinformatics McCammon
	Prediction of protein-protein interaction types using association rule based classification [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009) by Sung H. Park, Jose Reyes, David Gilbert, Ji W. Kim, Sangsoo Kim posted to interaction methods prediction protein-protein by grahamc on 2009-02-02 18:07:27 as along with 4 people anf renatomilani higueruelo neils
	Ortholog-based protein-protein interaction prediction and its application to inter-species interactions. [My Copy] BMC bioinformatics, Vol. 9 Suppl 12 (2008) by S. A. Lee, C. H. Chan, C. H. Tsai, et al.J. M. Lai, F. S. Wang, C. Y. Kao, C. Y. Huang posted to interaction methods prediction protein-protein by grahamc on 2009-01-26 18:25:15 as along with 2 people cerca guhjy
	Improved homology-driven computational validation of protein-protein interactions motivated by the evolutionary gene duplication and divergence hypothesis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009) by Christian Frech, Michael Kommenda, Viktoria Dorfer, et al.Thomas Kern, Helmut Hintner, Johann Bauer, Kamil Oender posted to interactions methods prediction protein-protein validation by grahamc on 2009-01-26 18:19:28 as along with 3 people guhjy timg barriot
	Prediction of Nuclear Proteins using SVM and HMM Models [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009) by Manish Kumar, Gajendra Raghava posted to methods prediction subcellular_location by grahamc on 2009-01-26 18:18:12 as along with 5 people firyarn84 mhamada mdstobbe druvus neils
	Sequence-based Prediction of Protein Interaction Sites with an Integrative Method. [My Copy] Bioinformatics (Oxford, England) (19 January 2009) by Xue-Wen W. Chen, Jong Cheol C. Jeong posted to interactions methods prediction protein-protein by grahamc on 2009-01-26 18:09:07 as along with 2 people iaolier carlosjavierna
	Flanking signal and mature peptide residues influence signal peptide cleavage. [My Copy] BMC bioinformatics, Vol. 9 Suppl 12 (2008) by K. H. Choo, S. Ranganathan posted to prediction signal_peptide subcellular_location by grahamc on 2009-01-12 18:33:31 as
	Predicted mouse peroxisome-targeted proteins and their actual subcellular locations [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008), S16. by Yumi Mizuno, Igor Kurochkin, Marlis Herberth, Yasushi Okazaki, Christian Schonbach posted to prediction subcellular_location by grahamc on 2009-01-12 18:31:42 as along with 1 person ptrobajo
	Algorithm of OMA for large-scale orthology inference [My Copy] BMC Bioinformatics, Vol. 9 (04 December 2008), 518. by Alexander, Christophe Dessimoz posted to comparative_genomics methods orthologues prediction by grahamc on 2008-12-08 14:36:27 as along with 5 people AaronDarling alpae cgaugain barriot druvus
	ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins [My Copy] BMC Bioinformatics, Vol. 9 (28 November 2008), 503. by Aarti Garg, Gajendra P. S. Raghava posted to methods prediction subcellular_location by grahamc on 2008-12-01 14:52:09 as
	EchoLOCATION: an in silico analysis of the subcellular locations of Escherichia coli proteins and comparison with experimentally derived locations. [My Copy] Bioinformatics (Oxford, England) (16 November 2008) by Richard S P S. Horler, Andrew Butcher, Nikitas Papangelopoulos, Peter D D. Ashton, Gavin H H. Thomas posted to e_coli prediction subcellular_location by grahamc on 2008-11-20 22:37:32 as along with 1 person mstumpf
	Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 243-250. by Kevin Y. Yip, Mark Gerstein posted to interactions methods network_biology prediction protein-protein by grahamc on 2008-11-20 22:32:55 as along with 6 people ptrobajo anf guhjy mstumpf imina kgutwin
	Transmembrane topology and signal peptide prediction using dynamic bayesian networks. [My Copy] PLoS computational biology, Vol. 4, No. 11. (November 2008) by S. M. Reynolds, L. Käll, M. E. Riffle, J. A. Bilmes, W. S. Noble posted to methods prediction signal_peptide tools transmembrane_prediction by grahamc on 2008-11-10 00:47:38 as along with 1 person cabbagesofdoom
	PIPs: human protein-protein interaction prediction database [My Copy] Nucl. Acids Res., Vol. 37, No. Database issue. (6 November 2008), gkn870. by Mark D. Mcdowall, Michelle S. Scott, Geoffrey J. Barton posted to human interactions prediction protein-protein by grahamc on 2008-11-10 00:32:13 as along with 5 people guhjy kgutwin cerca renatomilani higueruelo
	Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species [My Copy] Nucl. Acids Res. (4 October 2008), gkn619. by Kiyoung Lee, Han-Yu Chuang, Andreas Beyer, et al.Min-Kyung Sung, Won-Ki Huh, Bonghee Lee, Trey Ideker posted to interactions methods prediction protein-protein subcellular_location by grahamc on 2008-11-03 19:20:16 as along with 6 people tienholin carlk brianb neils giovenko ptrobajo
	Identification of hot-spot residues in protein-protein interactions by computational docking. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Solène Grosdidier, Juan Fernández-Recio posted to domain interactions prediction protein-protein by grahamc on 2008-10-27 15:45:46 as along with 6 people ubcg08l pablocarb bicko higueruelo i000 neils
	Improving Subcellular Localization Prediction using Text Classification and the Gene Ontology [My Copy] Bioinformatics (26 August 2008), btn463. by Alona Fyshe, Yifeng Liu, Duane Szafron, Russ Greiner, Paul Lu posted to gene_ontology methods prediction subcellular_location by grahamc on 2008-10-27 15:25:39 as along with 3 people guhjy ptrobajo phoenixzxl
	SPOCTOPUS: A combined predictor of signal peptides and membrane protein topology. [My Copy] Bioinformatics (Oxford, England) (22 October 2008) by Hâkan Viklund, Andreas Bernsel, Marcin Skwark, Arne Elofsson posted to bioinformatics prediction signal_peptide tools transmembrane_prediction by grahamc on 2008-10-27 15:21:58 as along with 1 person neils
	Message-passing algorithms for the prediction of protein domain interactions from protein-protein interaction data [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 2064-2070. by Mudassar Iqbal, Alex A. Freitas, Colin G. Johnson, Massimo Vergassola posted to domain interactions prediction protein-protein by grahamc on 2008-10-06 19:44:07 as along with 6 people carlk afon zwang reyez iris_2001 phoenixzxl
	Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 19. (1 October 2008), pp. 2265-2266. by Faruck Morcos, Charles Lamanna, Marcin Sikora, Jesús Izaguirre posted to bioinformatics cytoscape interactions prediction protein-protein tools by grahamc on 2008-10-06 17:27:27 as along with 5 people badi guhjy phoenixzxl marck natstreet
	Physical protein-protein interactions predicted from microarrays [My Copy] Bioinformatics, Vol. 24, No. 22. (15 November 2008), pp. 2608-2614. by Ta-tsen Soong, Kazimierz O. Wrzeszczynski, Burkhard Rost posted to interactions microarray prediction protein-protein by grahamc on 2008-10-06 17:21:56 as along with 12 people jperkins kiekyon jfr cgaugain guhjy saket iris_2001 pengchy natstreet phoenixzxl neils renatomilani
	Evaluation and comparison of mammalian subcellular localization prediction methods. [My Copy] BMC bioinformatics, Vol. 7 Suppl 5 (2006) by J. Sprenger, J. L. Fink, R. D. Teasdale posted to methods prediction subcellular_location by grahamc on 2008-09-09 16:39:41 as
	A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis [My Copy] Cell, Vol. 134, No. 3. (8 August 2008), pp. 534-545. by Mike Boxem, Zoltan Maliga, Niels Klitgord, et al.Na Li, Irma Lemmens, Miyeko Mana, Lorenzo de Lichtervelde, Joram D. Mul, Diederik van de Peut, Maxime Devos, Nicolas Simonis, Muhammed A. Yildirim, Murat Cokol, Huey-Ling Kao, Anne-Sophie de Smet, Haidong Wang, Anne-Lore Schlaitz, Tong Hao, Stuart Milstein, Changyu Fan, Mike Tipsword, Kevin Drew, Matilde Galli, Kahn Rhrissorrakrai, David Drechsel, Daphne Koller, Frederick P. Roth, Lilia M. Iakoucheva, Keith A. Dunker, Richard Bonneau, Kristin C. Gunsalus, David E. Hill, Fabio Piano, Jan Tavernier, Sander van den Heuvel, Anthony A. Hyman, Marc Vidal posted to domains interactions model_organisms prediction protein-protein by grahamc on 2008-09-03 21:56:59 as along with 3 people cerca phoenixzxl zwang
	Predicting sub-Golgi localization of type II membrane proteins. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008), pp. 1779-1786. by A. D. van Dijk, D. Bosch, C. J. ter Braak, A. R. van der Krol, R. C. van Ham posted to methods prediction subcellular_location by grahamc on 2008-08-28 00:43:45 as
	High Performance Signal Peptide Prediction Based on Sequence Alignment Techniques. [My Copy] Bioinformatics (Oxford, England) (12 August 2008) by Karl Frank, Manfred J J. Sippl posted to methods prediction secretome signal_peptide by grahamc on 2008-08-28 00:40:35 as
	Computational Prediction of Human Proteins That Can Be Secreted into the Bloodstream [My Copy] Bioinformatics (12 August 2008), btn418. by Juan Cui, Qi Liu, David Puett, Ying Xu posted to machine_learning methods prediction proteomics secretome by grahamc on 2008-08-28 00:37:24 as along with 2 people guhjy sg45653
	A map of human protein interactions derived from co-expression of human mRNAs and their orthologs [My Copy] Mol Syst Biol, Vol. 4 (15 April 2008) by Arun K. Ramani, Zhihua Li, G. Traver Hart, Mark W. Carlson, Daniel R. Boutz, Edward M. Marcotte posted to co-expression human interactions prediction protein-protein by grahamc on 2008-05-28 02:49:05 as along with 11 people and 2 groups kgutwin windman83 druvus jeremymiller tmmurali biomcgary phoenixzxl zwang giovanni ardalby ptrobajo KeatingJClub OPIG
	Insights into Protein–Protein Interfaces using a Bayesian Network Prediction Method [My Copy] Journal of Molecular Biology, Vol. 362, No. 2. (15 September 2006), pp. 365-386. by James R. Bradford, Chris J. Needham, Andrew J. Bulpitt, David R. Westhead posted to methods network_biology prediction by grahamc on 2008-03-28 20:46:28 as along with 8 people and 2 groups dfdong barry conkymacro ameetsoni massivemayhem phoenixzxl marti paolomarcatili structural_bioinformatics Bioinformatics
	Accurate prediction of protein\|[ndash]\|protein interactions from sequence alignments using a Bayesian method [My Copy] Molecular Systems Biology, Vol. 4 (12 February 2008) by Lukas Burger, Erik van Nimwegen posted to interactions methods prediction protein-protein by grahamc on 2008-02-28 04:53:44 as along with 14 people iaolier robfsouza raik sjcockell kengg laughcry zwang biomcgary cabbagezs roys cdeane gjuggler phoenixzxl pansapiens
	ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization [My Copy] BMC Bioinformatics, Vol. 9 (01 February 2008), 80. by Wen-Lin Huang, Chun-Wei Tung, Shih-Wen Ho, Shiow-Fen Hwang, Shinn-Ying Ho posted to prediction subcellular_location by grahamc on 2008-02-26 04:24:55 as along with 3 people tg150 mclarenv guhjy
	InterProSurf: a web server for predicting interacting sites on protein surfaces. [My Copy] Bioinformatics (12 October 2007) by Surendra S S. Negi, Catherine H H. Schein, Numan Oezguen, Trevor D D. Power, Werner Braun posted to interactions motifs prediction by grahamc on 2008-01-04 03:50:56 as along with 3 people guhjy bicko Ema
	meta-PPISP: a meta web server for protein-protein interaction site prediction [My Copy] Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3386-3387. by Sanbo Qin, Huan-Xiang Zhou posted to interactions motifs prediction by grahamc on 2008-01-04 03:49:22 as along with 4 people jinghu_fandm guhjy bicko marti
	A new computational approach to analyze human protein complexes and predict novel protein interactions [My Copy] Genome Biology, Vol. 8, No. 12. (2007) by Sara Zanivan, Ilaria Cascone, Chiara Peyron, et al.Ivan Molineris, Serena Marchio, Michele Caselle, Federico Bussolino posted to interactions methods prediction protein_complexes protein-protein by grahamc on 2007-12-15 02:51:01 as along with 3 people neils barriot zdai
	Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Takeyuki Tamura, Tatsuya Akutsu posted to algorithm algorithms co-localization prediction tools by grahamc on 2007-12-15 02:39:19 as along with 2 people neils mdstobbe
	Correlated sequence-signatures as markers of protein-protein interaction. [My Copy] J Mol Biol, Vol. 311, No. 4. (24 August 2001), pp. 681-692. by E. Sprinzak, H. Margalit posted to interactions methods prediction protein-protein by grahamc on 2007-10-10 21:16:50 as along with 10 people behindtherabbit bicko chad_davis maryee dyermd cjeans lilith wilbur Rhys phoenixzxl
	Learning to predict protein-protein interactions from protein sequences. [My Copy] Bioinformatics, Vol. 19, No. 15. (12 October 2003), pp. 1875-1881. by S. M. Gomez, W. S. Noble, A. Rzhetsky posted to interactions methods prediction protein-protein by grahamc on 2007-10-10 21:16:08 as along with 4 people maryee cjeans wilbur Pao-Yang

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interactions	169
protein-protein	143
methods	78
synthetic_biology	72
tools	67
evolution	64
ecm	56
network_biology	53
prediction	46
network_topology	33
human	32
bioinformatics	29
data_integration	26
domains	25
network_properties	25
disease	21
genomics	21
elastin	20
igem	20
database	19
subcellular_location	19
proteomics	18
metabolism	17
motifs	17
comparative_genomics	16
systems_biology	16
algorithm	15
elastomer	15
function_prediction	15
statistics	15
network_statistics	14
sequencing	14
domain	13
gene_ontology	13
review	13
yeast	13
model_organisms	10
self-assembly	10
collagen	9
modeling	9
network_confidence	9
clustering_methods	8
tissue_specific_gene_expression	8
algorithms	7
cytoscape	7
matrix_architecture	7
network_alignment	7
protein_evolution	7
annotation	6
clustering	6
pattern_recognition	6
phenotype	6
protein_complexes	6
transmembrane_prediction	6
bio_fuel	5
functional_modules	5
interaction	5
network_comparison	5
post_translational_modification	5
alignment	4
biological_networks	4
ecm_remodeling	4
ecoli	4
expression	4
gene_expression	4
genomes	4
go_terms	4
graph_theory	4
matrix_remodeling	4
metabolic_channeling	4
minimal_cell	4
protein_protein_interactions	4
signaling	4
signal_peptide	4
two-hybrid	4
visualization	4
wound_repair	4
angiogenesis	3
betweenness	3
biology	3
bone_homeostasis	3
choanoflagellates	3
co-expression	3
development	3
function	3
functional_annotation	3
gene_identifiers	3
genome_evolution	3
mass_spec	3
microarray	3
network_visualization	3
orthologues	3
pathway_modeling	3
phylogenetic_analysis	3
protein	3
scientific_communication	3
simulation	3
structure	3
vertebrate_genomics	3
accuracy	2
aging	2
assembly	2
binding_domains	2
cancer	2
cardiac	2
centrality	2
co-localization	2
epigenetics	2
evaluation	2
fibroblast	2
hydra	2
integrin	2
interologues	2
long_pcr	2
matrix_mmp	2
metazoa	2
morphology	2
pattern_development	2
publishing	2
scoring	2
search	2
secretome	2
selection	2
sequence_conservation	2
sequenced_organisms	2
software	2
specialty-network	2
sponges	2
standards	2
synteny	2
text_mining	2
transcription_factors	2
translation	2
aging_network	1
alternative_splicing	1
ancestral_genomes	1
ancient_dna	1
aorta	1
api	1
assessment	1
bacteria	1
biofuels	1
biological_computation	1
bladder	1
bone_mineralization	1
bone_regulatory_network	1
capillary_formation	1
carbohydrate	1
career_science	1
cell_migration	1
cell_wall	1
cloning	1
cnidaria	1
curation	1
cysteine-labeling	1
cytoskeleton	1
decorin	1
diatoms	1
disease_classification	1
domain-domain	1
early_life	1
e_coli	1
encode_project	1
engineered_proteins	1
enrichment	1
ethics	1
exobiology	1
extracellular	1
extracellular_proteins	1
fibrillin	1
fibrin	1
fibulin	1
functional_maps	1
fuzzy_logic	1
gene	1
gene_environment	1
gene_families	1
gene_loss	1
genome_annotation	1
glycomics	1
gold_standards	1
hemostasis	1
hexapoda	1
homologue_detection	1
hydrophobic_polymerization	1
imaging	1
induction	1
interaction_site	1
introns	1
java	1
kidney_development	1
learning	1
lumier	1
machine_learning	1
mammalian	1
mars	1
memory	1
mesh_terms	1
metadata	1
micro_rna	1
microscopy	1
modularity	1
molecular_dynamics	1
mouse	1
mouse_development	1
multicellularity	1
net	1
network_analysis	1
neuroplasticity	1
normal_vs_disease	1
ontologies	1
organogenesis	1
orthologous	1
phage_display	1
plasmodium	1
poster	1
protein_dynamics	1
protein_features	1
protein_folding	1
protein_function	1
protein_interactions	1
protein_scaffolds	1
quality	1
reliability	1
scale-free	1
secondary_structure	1
silkworm	1
systems	1
tension	1
tissue	1
uniprot	1
validation	1
vasculogenesis	1
visualization_system	1
zebrafish	1

grahamc's prediction [46 articles] Export

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