granujilla's library 67 articles Export

	Pattern Recognition and Machine Learning [My Copy] Springer (2006), pp. 272-277. by C. M. Bishop posted to no-tag by granujilla on 2008-10-08 11:36:23 as
	Loop modeling: sampling, filtering, and scoring. [My Copy] Proteins (29 August 2007) by Cinque S S. Soto, Marc Fasnacht, Jiang Zhu, Lucy Forrest, Barry Honig posted to no-tag by granujilla on 2008-10-06 14:00:40 as along with 2 people and 1 group mijam cdeane OPIG
	Statistics of extremes [My Copy] Columbia University Press, New York (1958) by E. J. Gumbel posted to no-tag by granujilla on 2008-09-28 09:07:45 as
	Pattern Recognition and Machine Learning [My Copy] Springer (2006), pp. 291-320. by C. M. Bishop posted to no-tag by granujilla on 2008-09-28 08:36:07 as
	Biological sequence analysis [My Copy] (2006), pp. 92-96. by R. Durbin, S. Eddy, A. Krogh, G. Mitchison edited by Cambridge U. Press posted to no-tag by granujilla on 2008-09-28 08:07:42 as along with 1 person treangen
	De novo identification of highly diverged protein repeats by probabilistic consistency [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 807-814. by A. Biegert, J. Söding posted to no-tag by granujilla on 2008-09-28 08:02:46 as along with 1 person treangen
	SCOP: a structural classification of proteins database for the investigation of sequences and structures [My Copy] J Mol Biol., Vol. 247, No. 4. (1995), pp. 536-540. by A. G. Murzin, S. E. Brenner, T. Hubbard, C. Chothia posted to no-tag by granujilla on 2008-09-21 16:59:01 as
	CATH--a hierarchic classification of protein domain structures [My Copy] Structure, Vol. 5, No. 8. (1997), pp. 1093-1108. by C. A. Orengo, A. D. Michie, D. T. Jones, M. B. Swindells, J. M. Thornton posted to no-tag by granujilla on 2008-09-21 16:33:32 as
	Large-scale protein structure modeling of the Saccharomyces cerevisiae genome [My Copy] PNAS, Vol. 95, No. 23. (10 November 1998), pp. 13597-13602. by Roberto Sanchez, Andrej Sali posted to no-tag by granujilla on 2008-09-21 12:02:22 as along with 3 people operon vavi ffranca
	Protein structure modeling for structural genomics [My Copy] Nat Struct Biol. (7 November 2000) by R. Sánchez, U. Pieper, F. Melo, et al.N. Eswar, M. A. Martí-Renom, M. S. Madhusudhan, N. Mirković, A. Sali posted to no-tag by granujilla on 2008-09-21 11:55:04 as
	Protein Structure Prediction Using Rosetta [My Copy] Methods Enzymol In Numerical Computer Methods, Part D, Vol. 383 (2004), pp. 66-93. by C. Rohl, C. Strauss, K. Misura, D. Baker posted to no-tag by granujilla on 2008-09-20 19:48:27 as along with 7 people mijam bullli502 nigham thaliana dgront JimmyMac saunders
	MaxSub: an automated measure for the assessment of protein structure prediction quality. [My Copy] Bioinformatics, Vol. 16, No. 9. (September 2000), pp. 776-785. by N. Siew, A. Elofsson, L. Rychlewski, D. Fischer posted to no-tag by granujilla on 2008-09-19 13:28:39 as along with 6 people and 2 groups sebk rabio BragilMassoud marcius dgront biehl BioinfoCIPF SGU-CIPF
	A Simplex Method for Function Minimization [My Copy] The Computer Journal, Vol. 7, No. 4. (1 January 1965), pp. 308-313. by J. A. Nelder, R. Mead posted to no-tag by granujilla on 2008-09-15 16:23:09 as along with 11 people and 2 groups eyliu A_Coletta_Thesis tomt21 eindermu skoch3 michelcias pcoupe deitosrafael 0pika0 aogier abrentnall Structural Biology Group TorVergata Koch_Lab
	Numerical Recipes [My Copy] C. Cambridge University Press (2007), pp. 502-507. by W. H. Press, S. A. Teukolsky, W. T. Vetterling, B. P. Flannery posted to no-tag by granujilla on 2008-09-08 12:58:09 as
	AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR [My Copy] Journal of Biomolecular NMR, Vol. 8, No. 4. (1 December 1996), pp. 477-486. by Roman A. Laskowski, Rullmann, Malcolm W. Macarthur, Robert Kaptein, Janet M. Thornton posted to no-tag by granujilla on 2008-08-27 13:35:34 as
	VERIFY3D: assessment of protein models with three-dimensional profiles. [My Copy] Methods Enzymol, Vol. 277 (1997), pp. 396-404. by D. Eisenberg, R. Lüthy, J. U. Bowie posted to no-tag by granujilla on 2008-08-27 13:30:51 as along with 2 people j3xucite dgront
	Errors in protein structures. [My Copy] Nature, Vol. 381, No. 6580. (23 May 1996) by R. W. Hooft, G. Vriend, C. Sander, E. E. Abola posted to no-tag by granujilla on 2008-08-27 13:24:08 as along with 1 person dgront
	Evaluation of comparative protein structure modeling by MODELLER-3 [My Copy] Proteins: Structure, Function, and Genetics, Vol. 29, No. S1. (1997), pp. 50-58. by Roberto Sánchez, Andrej Scaronali posted to no-tag by granujilla on 2008-08-27 12:18:59 as
	Multiple sequence alignment with Clustal X [My Copy] Trends in Biochemical Sciences, Vol. 23, No. 10. (1 October 1998), pp. 403-405. by François Jeanmougin, Julie D. Thompson, Manolo Gouy, Desmond G. Higgins, Toby J. Gibson posted to no-tag by granujilla on 2008-08-26 21:13:25 as along with 1 person treangen
	A general method applicable to the search for similarities in the amino acid sequence of two proteins☆ [My Copy] Journal of Molecular Biology, Vol. 48, No. 3. (28 March 1970), pp. 443-453. by S. Needleman, C. Wunsch posted to no-tag by granujilla on 2008-08-26 21:08:28 as along with 7 people jwm kentz mmartin nafets BioNica adijr RamuAnandakrishnan
	Principles that govern the folding of protein chains. [My Copy] Science (New York, N.Y.), Vol. 181, No. 96. (20 July 1973), pp. 223-230. by C. B. Anfinsen posted to no-tag by granujilla on 2008-08-26 08:20:11 as along with 7 people dfdong rsaito cactus karbak thaliana fjc1 rabio
	Genome sequencing in the fast lane [My Copy] Nature Methods, Vol. 3, No. 2., pp. 141-147. by Laura Bonetta posted to no-tag by granujilla on 2008-08-25 10:08:29 as along with 1 person treangen
	Scoring function for automated assessment of protein structure template quality [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 57, No. 4., pp. 702-710. by Yang Zhang, Jeffrey Skolnick posted to no-tag by granujilla on 2008-08-20 13:55:11 as along with 8 people and 2 groups pjcite saunders reyez karbak marcius dgront aengisch rabio BioinfoCIPF SGU-CIPF
	TM-align: a protein structure alignment algorithm based on the TM-score. [My Copy] Nucleic acids research, Vol. 33, No. 7. (22 April 2005), pp. 2302-2309. by Yang Zhang, Jeffrey Skolnick posted to no-tag by granujilla on 2008-08-20 13:23:39 as along with 7 people maria_hauser operon newton1234 joseolucha mijam reyez pjcite
	Protein secondary structure prediction based on position-specific scoring matrices. [My Copy] Journal of molecular biology, Vol. 292, No. 2. (17 September 1999), pp. 195-202. by D. T. Jones posted to no-tag by granujilla on 2008-08-17 16:26:23 as along with 11 people rpetrenko kgutwin pjcite chad_davis wouterboomsma j3xucite dgront rabio rph dandaman saunders
	The Protein Data Bank. [My Copy] Acta Crystallogr D Biol Crystallogr, Vol. 58, No. Pt 6 No 1. (June 2002), pp. 899-907. by H. M. Berman, T. Battistuz, T. N. Bhat, et al.W. F. Bluhm, P. E. Bourne, K. Burkhardt, Z. Feng, G. L. Gilliland, L. Iype, S. Jain, P. Fagan, J. Marvin, D. Padilla, V. Ravichandran, B. Schneider, N. Thanki, H. Weissig, J. D. Westbrook, C. Zardecki posted to no-tag by granujilla on 2008-08-17 15:44:43 as along with 1 person siebertm
	Protein homology detection by HMM-HMM comparison. [My Copy] Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 951-960. by J. Söding posted to no-tag by granujilla on 2008-08-16 15:38:26 as along with 4 people thegoose2 chad_davis msierk tharris
	Chromatin structure and expression of synapsin I and synaptophysin in retinal precursor cells. [My Copy] Neurochemistry international (25 July 2008) by Myriam Ekici, Frank Schmitz, Mathias Hohl, Gail M M. Seigel, Gerald Thiel posted to no-tag by granujilla on 2008-08-12 20:31:56 as
	Progress over the first decade of CASP experiments. [My Copy] Proteins (26 September 2005) by Andriy Kryshtafovych, Ceslovas Venclovas, Krzysztof Fidelis, John Moult posted to no-tag by granujilla on 2008-08-06 14:36:08 as along with 5 people and 2 groups saunders bicko marcius ffranca schuylrp BioinfoCIPF SGU-CIPF
	Assessment of progress over the CASP experiments. [My Copy] Proteins, Vol. 53 Suppl 6 (2003), pp. 585-595. by C. Venclovas, A. Zemla, K. Fidelis, J. Moult posted to no-tag by granujilla on 2008-08-06 14:34:56 as
	Assessment of CASP7 predictions for template-based modeling targets. [My Copy] Proteins, Vol. 69 Suppl 8 (2007), pp. 38-56. by J. Kopp, L. Bordoli, J. N. Battey, F. Kiefer, T. Schwede posted to no-tag by granujilla on 2008-08-06 14:34:20 as along with 2 people newton1234 janasont
	Methods of Conjugate Gradients for Solving Linear Systems [My Copy] Journal of Research of the National Bureau of Standards, Vol. 49 (Dec 1952), pp. 409-436. by Magnus R. Hestenes, Eduard Stiefel posted to bibtex-import file-import-08-08-06 by granujilla on 2008-08-06 11:53:47 as
	Knowledge-based prediction of protein structures and the design of novel molecules. [My Copy] Nature, Vol. 326, No. 6111. (1 1987), pp. 347-352. by T. L. Blundell, B. L. Sibanda, M. J. Sternberg, J. M. Thornton posted to no-tag by granujilla on 2008-08-01 10:03:12 as along with 1 person medic0747
	Accurate modeling of protein conformation by automatic segment matching. [My Copy] J Mol Biol, Vol. 226, No. 2. (20 July 1992), pp. 507-533. by M. Levitt posted to no-tag by granujilla on 2008-08-01 09:40:39 as along with 4 people rabio mijam warlock6x3 dgront
	ORFeus: Detection of distant homology using sequence profiles and predicted secondary structure. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3804-3807. by K. Ginalski, J. Pas, L. S. Wyrwicz, M. von Grotthuss, J. M. Bujnicki, L. Rychlewski posted to no-tag by granujilla on 2008-07-29 15:40:48 as along with 1 person j3xucite
	Searching databases of conserved sequence regions by aligning protein multiple-alignments. [My Copy] Nucleic Acids Res, Vol. 24, No. 19. (1 October 1996), pp. 3836-3845. by S. Pietrokovski posted to no-tag by granujilla on 2008-07-29 12:23:29 as along with 2 people Dulce dgront
	Profile-profile comparisons by COMPASS predict intricate homologies between protein families. [My Copy] Protein science : a publication of the Protein Society, Vol. 12, No. 10. (October 2003), pp. 2262-2272. by R. I. Sadreyev, D. Baker, N. V. Grishin posted to no-tag by granujilla on 2008-07-29 12:05:37 as
	Benchmarking template selection and model quality assessment for high-resolution comparative modeling [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by M. I. Sadowski, D. T. Jones posted to no-tag by granujilla on 2008-07-29 11:52:11 as along with 4 people j3xucite bicko chad_davis massivemayhem
	Protein fold recognition by sequence threading: tools and assessment techniques. [My Copy] The FASEB journal : official publication of the Federation of American Societies for Experimental Biology, Vol. 10, No. 1. (January 1996), pp. 171-178. by R. T. Miller, D. T. Jones, J. M. Thornton posted to no-tag by granujilla on 2008-07-25 16:05:24 as
	Empirical statistical estimates for sequence similarity searches. [My Copy] Journal of molecular biology, Vol. 276, No. 1. (13 February 1998), pp. 71-84. by W. R. Pearson posted to no-tag by granujilla on 2008-07-24 15:28:30 as along with 1 person treangen
	Rapid and sensitive sequence comparison with FASTP and FASTA. [My Copy] Methods in enzymology, Vol. 183 (1990), pp. 63-98. by W. R. Pearson posted to no-tag by granujilla on 2008-07-24 15:02:17 as along with 4 people jmeppley arcticrasta treangen jlh64
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to no-tag by granujilla on 2008-07-24 15:00:14 as along with 77 people and 6 groups VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Alignment of protein sequences by their profiles. [My Copy] Protein Sci, Vol. 13, No. 4. (April 2004), pp. 1071-1087. by M. A. Marti-Renom, M. S. Madhusudhan, A. Sali posted to no-tag by granujilla on 2008-07-24 14:23:18 as along with 3 people and 2 groups pjcite j3xucite marcius BioinfoCIPF SGU-CIPF
	Hidden Markov models for detecting remote protein homologies [My Copy] Bioinformatics, Vol. 14, No. 10. (1 November 1998), pp. 846-856. by K. Karplus, C. Barrett, R. Hughey posted to no-tag by granujilla on 2008-07-24 14:01:00 as along with 7 people and 2 groups ldiambra treangen j3xucite ana dgront rabio saunders structural_bioinformatics Bioinformatics
	Gaps in structurally similar proteins: towards improvement of multiple sequence alignment. [My Copy] Proteins, Vol. 54, No. 1. (1 January 2004), pp. 71-87. by J. O. Wrabl, N. V. Grishin posted to no-tag by granujilla on 2008-07-24 13:37:56 as along with 4 people and 2 groups j3xucite ana barry analogAI structural_bioinformatics Bioinformatics
	Profile-profile methods provide improved fold-recognition: a study of different profile-profile alignment methods. [My Copy] Proteins, Vol. 57, No. 1. (1 October 2004), pp. 188-197. by Tomas Ohlson, Björn Wallner, Arne Elofsson posted to no-tag by granujilla on 2008-07-24 13:33:35 as along with 3 people maria_hauser dgront rabio
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted to no-tag by granujilla on 2008-07-24 13:28:46 as along with 68 people and 5 groups rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm bandrewfox edvin newton1234 mariakmejia marti CharlesM References for 3DSim paper EisenLab biomedical-nlp Microbial-Ecology Plantandetc
	Automated server predictions in CASP7 [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 69, No. S8. (2007), pp. 68-82. by James N. D. Battey, Jürgen Kopp, Lorenza Bordoli, Randy J. Read, Neil D. Clarke, Torsten Schwede posted to no-tag by granujilla on 2008-07-24 09:49:50 as
	The sequence of the human genome. [My Copy] Science (New York, N.Y.), Vol. 291, No. 5507. (16 February 2001), pp. 1304-1351. by J. C. Venter, M. D. Adams, E. W. Myers, et al.P. W. Li, R. J. Mural, G. G. Sutton, H. O. Smith, M. Yandell, C. A. Evans, R. A. Holt posted to no-tag by granujilla on 2008-07-22 16:31:29 as along with 33 people and 3 groups rshe dspringett humburg vplagnol mqbphcw3 Scis0000002 fisherp sgoetz thegoose treangen frohike jo_davies reyez twenta aramata Cortel jwortman jnemecek bicko Dax42 yas balajis xdeupi arcticrasta dgront olympos incovoma naegele mimulus_99 brant CitoJam renatomilani Neeperando Proteinkinases T_lab LabCompMed
	STRUCTURING THE UNIVERSE OF PROTEINS [My Copy] Annual Review of Genomics and Human Genetics, Vol. 3, No. 1. (2002), pp. 243-262. by Stephen K. Burley, Jeffrey B. Bonanno posted to no-tag by granujilla on 2008-07-22 10:28:24 as

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