groepl's library 54 articles Export

	SeqAn an efficient, generic C++ library for sequence analysis. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Andreas Döring, David Weese, Tobias Rausch, Knut Reinert posted to no-tag by groepl on 2008-10-29 23:52:58 as along with 16 people aheilbut MarcelSchulz n00c druvus mmartin dquest daforerog guhjy chad_davis laughcry ryanraaum nklee barriot mailund magusina reyez
	LC-MSsim - a simulation software for Liquid Chromatography Mass Spectrometry data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Ole S. Trieglaff, Nico Pfeifer, Clemens Gropl, Oliver Kohlbacher, Knut Reinert posted to algorithm benchmark lc-ms-ms massspec metabolomics proteomics by groepl on 2008-10-29 14:45:58 as along with 5 people katerinakal guhjy renatomilani nuin rt
	Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements [My Copy] BMC Bioinformatics, Vol. 9 (15 September 2008), 375. by Eva Lange, Ralf Tautenhahn, Steffen Neumann, Clemens Groepl posted to no-tag by groepl on 2008-10-20 13:25:16 as along with 6 people robert ptrobajo guhjy rt katerinakal nuin
	Segment-based multiple sequence alignment [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i187-192. by Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Doring, Cedric Notredame, Knut Reinert posted to algorithm seqalign by groepl on 2008-08-29 02:18:34 as along with 9 people nuin BioNica darian Md_2007 zwang Ema APRegier djkt aprasad
	ProteoWizard: open source software for rapid proteomics tools development [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2534-2536. by Darren Kessner, Matt Chambers, Robert Burke, David Agus, Parag Mallick posted to lc-ms-ms proteomics by groepl on 2008-07-10 12:30:10 as along with 3 people brianb renatomilani guhjy
	Accelerating screening of 3D protein data with a graph theoretical approach [My Copy] Bioinformatics, Vol. 19, No. 18. (12 December 2003), pp. 2442-2447. by Cornelius Frommel, Christoph Gille, Andrean Goede, et al.Clemens Gropl, Stefan Hougardy, Till Nierhoff, Robert Preissner, Martin Thimm posted to algorithm proteomics statistics by groepl on 2008-07-01 02:15:30 as along with 1 person reyez
	OpenMS - an open-source software framework for mass spectrometry. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by M. Sturm, A. Bertsch, C. Gröpl, et al.A. Hildebrandt, R. Hussong, E. Lange, N. Pfeifer, O. Schulz-Trieglaff, A. Zerck, K. Reinert, O. Kohlbacher posted to lc-ms-ms massspec proteomics by groepl on 2008-06-30 23:55:15 as along with 7 people alyssaporter robert nedwards guhjy neils brianb olberd
	Comparison of Affymetrix GeneChip expression measures [My Copy] Bioinformatics, Vol. 22, No. 7. (1 April 2006), pp. 789-794. by Rafael A. Irizarry, Zhijin Wu, Harris A. Jaffee posted to benchmark statistics by groepl on 2008-06-10 01:10:38 as along with 7 people bertelsen zufar heliopais winterschlaefer RMGraze hggr ghattem
	Comparison of the capability of peak functions in describing real chromatographic peaks [My Copy] Journal of Chromatography A, Vol. 952, No. 1-2. (5 April 2002), pp. 63-70. by Jianwei Li posted to no-tag by groepl on 2008-03-26 15:40:05 as
	Annotation of LC/ESI-MS Mass Signals [My Copy] Bioinformatics Research and Development (2007), pp. 371-380. by Ralf Tautenhahn, Christoph Böttcher, Steffen Neumann posted to massspec metabolomics by groepl on 2008-03-10 17:53:25 as
	A Gentle Tutorial on the EM Algorithm and its Application to Parameter Estimation for Gaussian Mixture and Hidden Markov Models [My Copy] (1997) by J. Bilmes posted to algorithm statistics by groepl on 2008-01-25 12:32:17 as
	Logarithmic gap costs decrease alignment accuracy [My Copy] BMC Bioinformatics, Vol. 7 (05 December 2006), 527. by Reed A. Cartwright posted to seqalign by groepl on 2007-12-20 21:34:26 as along with 4 people and 1 group timflutre druvus treangen dpollard EisenLab
	MathDAMP: a package for differential analysis of metabolite profiles [My Copy] BMC Bioinformatics, Vol. 7 (13 December 2006), 530. by Richard Baran, Hayataro Kochi, Natsumi Saito, et al.Makoto Suematsu, Tomoyoshi Soga, Takaaki Nishioka, Martin Robert, Masaru Tomita posted to massspec metabolomics by groepl on 2007-12-20 21:28:31 as
	AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction [My Copy] BMC Bioinformatics, Vol. 8 (18 January 2007), 15. by Ayumu Saito, Masao Nagasaki, Masaaki Oyama, et al.Hiroko Kozuka-Hata, Kentaro Semba, Sumio Sugano, Tadashi Yamamoto, Satoru Miyano posted to massspec proteomics by groepl on 2007-12-20 21:18:38 as along with 1 person guhjy
	msmsEval: Tandem mass spectral quality assignment for high-throughput proteomics [My Copy] BMC Bioinformatics, Vol. 8 (09 February 2007), 51. by Jason W. H. Wong, Matthew J. Sullivan, Hugh M. Cartwright, Gerard Cagney posted to identification massspec proteomics by groepl on 2007-12-20 20:45:56 as
	Normalization method for metabolomics data using optimal selection of multiple internal standards [My Copy] BMC Bioinformatics, Vol. 8 (15 March 2007), 93. by Marko Sysi-Aho, Mikko Katajamaa, Laxman Yetukuri, Matej Oresic posted to massspec proteomics by groepl on 2007-12-20 20:40:36 as along with 2 people mdharsee BIBLIOma
	Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry [My Copy] BMC Bioinformatics, Vol. 8 (27 March 2007), 105. by Tobias Kind, Oliver Fiehn posted to no-tag by groepl on 2007-12-20 20:32:01 as along with 2 people robert egonw
	A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data [My Copy] BMC Bioinformatics, Vol. 8 (20 April 2007), 133. by Hua Xu, Michael A. Freitas posted to identification massspec proteomics by groepl on 2007-12-20 20:28:30 as along with 2 people kallberg guhjy
	The EIPeptiDi tool: enhancing peptide discovery in ICAT-based LC MS/MS experiments [My Copy] BMC Bioinformatics, Vol. 8 (15 July 2007), 255. by Mario Cannataro, Giovanni Cuda, Marco Gaspari, Sergio Greco, Giuseppe Tradigo, Pierangelo Veltri posted to identification lc-ms-ms proteomics by groepl on 2007-12-20 20:17:48 as along with 1 person guhjy
	Progressive multiple sequence alignments from triplets [My Copy] BMC Bioinformatics, Vol. 8 (15 July 2007), 254. by Matthias Kruspe, Peter F. Stadler posted to seqalign by groepl on 2007-12-20 20:09:37 as
	Quantitative quality-assessment techniques to compare fractionation and depletion methods in SELDI-TOF mass spectrometry experiments. [My Copy] Bioinformatics (11 July 2007) by Jaroslaw Harezlak, Mike Wang, David Christiani, Xihong Lin posted to massspec proteomics statistics by groepl on 2007-12-20 19:58:28 as along with 1 person guhjy
	SAMPI: Protein identification with Mass Spectra Alignments [My Copy] BMC Bioinformatics, Vol. 8 (26 March 2007), 102. by Hans-Michael Kaltenbach, Andreas Wilke, Sebastian Boecker posted to identification massspec proteomics by groepl on 2007-12-20 19:52:24 as along with 1 person BIBLIOma
	Precise protein quantification based on peptide quantification using iTRAQ. [My Copy] BMC bioinformatics, Vol. 8 (21 June 2007), 214. by A. M. Boehm, S. Pütz, D. Altenhöfer, A. Sickmann, M. Falk posted to no-tag by groepl on 2007-12-20 19:43:42 as along with 4 people Yanno ashrafmadian guhjy mdharsee
	A new approach that allows identification of intron-split peptides from mass spectrometric data in genomic databases [My Copy] FEBS Letters, Vol. 562 (March 2004), pp. 202-206. by Jens Allmer, Christine Markert, Einar J. Stauber, Michael Hippler posted to massspec proteomics by groepl on 2007-11-10 12:39:21 as
	MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data [My Copy] BMC Bioinformatics, Vol. 8 (13 June 2007), 197. by Juergen Hartler, Gerhard G. Thallinger, Gernot Stocker, et al.Alexander Sturn, Thomas R. Burkard, Erik Korner, Robert Rader, Andreas Schmidt, Karl Mechtler, Zlatko Trajanoski posted to massspec proteomics by groepl on 2007-11-02 15:21:57 as along with 4 people robert guhjy Thomasah brianb
	Proteomic Parsimony through Bipartite Graph Analysis Improves Accuracy and Transparency [My Copy] Journal of Proteome Research, Vol. 6, No. 9. (1 September 2007), pp. 3549-3557. by Bing Zhang, Matthew C. Chambers, David L. Tabb posted to lc-ms-ms proteomics by groepl on 2007-10-29 15:54:47 as along with 1 person absterga
	Proteomic Parsimony through Bipartite Graph Analysis Improves Accuracy and Transparency [My Copy] Journal of Proteome Research, Vol. 6, No. 9. (2007), pp. 3549-3557. by B. Zhang, M. C. Chambers, D. L. Tabb posted to bibtex-import by groepl on 2007-10-18 15:03:21 as
	De Novo Peptide Sequencing Based on a Divide-and-Conquer Algorithm and Peptide Tandem Spectrum Simulation [My Copy] Analytical Chemistry, Vol. 76, No. 21. (2004), pp. 6374-6383. by Z. Zhang posted to bibtex-import by groepl on 2007-10-18 01:26:06 as
	Multidimensional Separations-Based Shotgun Proteomics [My Copy] Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3654-3686. by M. L. Fournier, J. M. Gilmore, Martin S. A. Brown, M. P. Washburn posted to bibtex-import by groepl on 2007-10-18 00:46:22 as
	Accurate Mass Measurements in Proteomics [My Copy] Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3621-3653. by T. Liu, M. E. Belov, N. Jaitly, W. J. Qian, R. D. Smith posted to bibtex-import by groepl on 2007-10-18 00:46:22 as
	Serum and Plasma Proteomics [My Copy] Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3601-3620. by H. J. Issaq, Z. Xiao, T. D. Veenstra posted to bibtex-import by groepl on 2007-10-18 00:46:22 as
	Experimental and Computational Procedures for the Assessment of Protein Complexes on a Genome-wide Scale [My Copy] Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3585-3600. by G. A. Musso, Z. Zhang, A. Emili posted to bibtex-import by groepl on 2007-10-18 00:46:21 as
	Limitations and Pitfalls in Protein Identification by Mass Spectrometry [My Copy] Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3568-3584. by G. Lubec, Afjehi L. Sadat posted to bibtex-import by groepl on 2007-10-18 00:46:21 as
	Protein Complexes in the Gas Phase: Technology for Structural Genomics and Proteomics [My Copy] Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3544-3567. by J. L. P. Benesch, B. T. Ruotolo, D. A. Simmons, C. V. Robinson posted to bibtex-import by groepl on 2007-10-18 00:46:21 as
	Hydroxyl Radical-Mediated Modification of Proteins as Probes for Structural Proteomics [My Copy] Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3514-3543. by G. Xu, M. R. Chance posted to bibtex-import by groepl on 2007-10-18 00:46:21 as
	Systematic Genome Reductions: Theoretical and Experimental Approaches [My Copy] Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3498-3513. by T. Feher, B. Papp, C. Pal, G. Posfai posted to bibtex-import by groepl on 2007-10-18 00:46:21 as
	Genome Assembly, Rearrangement, and Repeats [My Copy] Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3391-3406. by H. Tang posted to bibtex-import by groepl on 2007-10-18 00:46:21 as
	Protein Annotation at Genomic Scale: The Current Status [My Copy] Chemical Reviews, Vol. 107, No. 8. (2007), pp. 3448-3466. by D. Frishman posted to bibtex-import by groepl on 2007-10-18 00:46:21 as
	Peer Group Vector Median Filter [My Copy] Pattern Recognition (2007), pp. 314-323. by Bogdan Smolka posted to massspec signalproc statistics by groepl on 2007-10-12 15:34:19 as
	Machine Learning and Its Applications to Biology. [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007) by Adi L L. Tarca, Vincent J J. Carey, Xue-Wen W. Chen, Roberto Romero, Sorin Drăghici posted to statistics by groepl on 2007-10-10 15:24:29 as along with 5 people and 1 group klouie jfr chad_davis rsantana gsiwo Bioinformatics
	A Primer on Learning in Bayesian Networks for Computational Biology [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e129. by Chris J. Needham, James R. Bradford, Andrew J. Bulpitt, David R. Westhead posted to statistics by groepl on 2007-10-10 15:15:36 as along with 13 people and 2 groups sameersoi Sonix guhjy brian jfr balicea grahamc zwang bertelsen cabbagezs ppark idonaldson isimpson Bioinformatics BergmanLab
	Recent Evolutions of Multiple Sequence Alignment Algorithms [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123. by Cédric Notredame posted to seqalign by groepl on 2007-10-10 15:12:13 as along with 11 people and 2 groups druvus treangen mdimmic rvosa timflutre stajich zwang cabbagezs yoanjacquemin marti smbe2008 Bioinformatics FAB-lab
	Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners [My Copy] PLoS Comput Biol, Vol. 3, No. 4. (27 April 2007), e43. by Benjamin A. Shoemaker, Anna R. Panchenko posted to proteomics by groepl on 2007-10-10 14:57:52 as along with 25 people aceol colmryan timg cerca jperkins chica kiekyon kshameer zdai Robinder giovenko Yanno guhjy aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes carlk Evangelia higueruelo phoenixzxl
	Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e42. by Benjamin A. Shoemaker, Anna R. Panchenko posted to proteomics by groepl on 2007-10-10 14:57:25 as along with 8 people guhjy aalibes bicko jfr chad_davis cjeans iris_2001 lpfernandes
	Wavelets in bioinformatics and computational biology: state of art and perspectives [My Copy] Bioinformatics, Vol. 19, No. 1. (1 January 2003), pp. 2-9. by Pietro Lio posted to massspec wavelet by groepl on 2007-10-10 13:20:18 as along with 4 people and 1 group reyntjesr humburg polivares timflutre BergmanLab
	ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites [My Copy] BMC Bioinformatics, Vol. 8 (23 June 2007), 216. by Jan Hummel, Michaela Niemann, Stefanie Wienkoop, et al.Waltraud Schulze, Dirk Steinhaeuser, Joachim Selbig, Dirk Walther, Wolfram Weckwerth posted to massspec proteomics by groepl on 2007-10-02 00:27:33 as along with 2 people guhjy dullhunk
	Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Witold Wolski, Maciej Lalowski, Peter Martus, et al.Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert posted to massspec proteomics by groepl on 2007-10-02 00:13:18 as
	Setting Parameters by Example [My Copy] (2 Jul 1999) by David Eppstein posted to seqalign by groepl on 2007-09-21 11:31:36 as
	Simple and Fast Inverse Alignment [My Copy] Research in Computational Molecular Biology (2006), pp. 441-455. by John Kececioglu, Eagu Kim posted to seqalign by groepl on 2007-09-21 11:00:59 as
	Inverse Sequence Alignment from Partial Examples [My Copy] Algorithms in Bioinformatics (2007), pp. 359-370. by Eagu Kim, John Kececioglu posted to seqalign by groepl on 2007-09-21 10:59:45 as