TOPDOM: database of domains and motifs with conservative location in transmembrane proteins. Export

@article{citeulike:2772124, abstract = {SUMMARY: The TOPDOM database is a collection of domains and sequence motifs located consistently on the same side of the membrane in alpha-helical transmembrane proteins. The database was created by scanning well annotated transmembrane protein sequences in the UniProt database by specific domain or motif detecting algorithms. The identified domains or motifs were added to the database if they were uniformly annotated on the same side of the membrane of the various proteins in the UniProt database. The information about the location of the collected domains and motifs can be incorporated into constrained topology prediction algorithms, like HMMTOP, increasing the prediction accuracy. AVAILABILITY: The TOPDOM database and the constrained HMMTOP prediction server are available on the page http://topdom.enzim.hu. CONTACT: tusi@enzim.hu, lkamar@enzim.hu.}, address = {Institue of Enzymology, BRC, Hungarian Academy of Sciences, H-1113 Karolina \'{u}t 29, Budapest, Hungary.}, author = {Tusn\'{a}dy, G\'{a}bor E E. and Kalm\'{a}r, Lajos and Hegyi, H\'{e}di and Tompa, P\'{e}ter and Simon, Istv\'{a}n}, citeulike-article-id = {2772124}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btn202}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/24/12/1469}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/18434342}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=18434342}, day = {23}, doi = {10.1093/bioinformatics/btn202}, issn = {1460-2059}, journal = {Bioinformatics (Oxford, England)}, keywords = {domains-database, proteins, transmebrane}, month = {April}, posted-at = {2008-08-09 20:33:19}, priority = {2}, title = {TOPDOM: database of domains and motifs with conservative location in transmembrane proteins.}, url = {http://dx.doi.org/10.1093/bioinformatics/btn202}, year = {2008} }

TY - JOUR ID - citeulike:2772124 L3 - citeulike-article-id:2772124 N2 - SUMMARY: The TOPDOM database is a collection of domains and sequence motifs located consistently on the same side of the membrane in alpha-helical transmembrane proteins. The database was created by scanning well annotated transmembrane protein sequences in the UniProt database by specific domain or motif detecting algorithms. The identified domains or motifs were added to the database if they were uniformly annotated on the same side of the membrane of the various proteins in the UniProt database. The information about the location of the collected domains and motifs can be incorporated into constrained topology prediction algorithms, like HMMTOP, increasing the prediction accuracy. AVAILABILITY: The TOPDOM database and the constrained HMMTOP prediction server are available on the page http://topdom.enzim.hu. CONTACT: tusi@enzim.hu, lkamar@enzim.hu. JF - Bioinformatics (Oxford, England) SN - 1460-2059 AD - Institue of Enzymology, BRC, Hungarian Academy of Sciences, H-1113 Karolina út 29, Budapest, Hungary. TI - TOPDOM: database of domains and motifs with conservative location in transmembrane proteins. KW - domains-database KW - proteins KW - transmebrane AU - Tusnády, Gábor E AU - Kalmár, Lajos AU - Hegyi, Hédi AU - Tompa, Péter AU - Simon, István PY - 2008/04/23/ UR - http://dx.doi.org/10.1093/bioinformatics/btn202 ER -