gurkanbebek's library 123 articles Export

	Monkey: Approximate Graph Mining Based on Spanning Trees [My Copy] Data Engineering, 2007. ICDE 2007. IEEE 23rd International Conference on In Data Engineering, 2007. ICDE 2007. IEEE 23rd International Conference on (2007), pp. 1247-1249. by Shijie Zhang, Jiong Yang, V. Cheedella posted to no-tag by gurkanbebek on 2009-07-28 18:12:37 as
	Discovering Neglected Conditions in Software by Mining Dependence Graphs [My Copy] IEEE Trans. Softw. Eng., Vol. 34, No. 5. (2008), pp. 579-596. by Ray Y. Chang, Andy Podgurski, Jiong Yang posted to no-tag by gurkanbebek on 2009-07-28 18:09:37 as
	RAM: Randomized Approximate Graph Mining [My Copy] Scientific and Statistical Database Management (2008), pp. 187-203. by Shijie Zhang, Jiong Yang posted to no-tag by gurkanbebek on 2009-07-28 18:09:26 as along with 1 person cswinburne
	GADDI: distance index based subgraph matching in biological networks [My Copy] In EDBT '09: Proceedings of the 12th International Conference on Extending Database Technology (2009), pp. 192-203. by Shijie Zhang, Shirong Li, Jiong Yang posted to no-tag by gurkanbebek on 2009-07-28 18:08:15 as
	Terrestrial Isopod Biology (Crustacean Issues) [My Copy] (01 June 1995) by A. M. Alikhan posted to no-tag by gurkanbebek on 2009-04-11 22:33:38 as
	Isopod Systematics and Evolution (Crustacean Issues) [My Copy] (01 June 2001) posted to no-tag by gurkanbebek on 2009-04-11 22:28:47 as
	Isopod biology—guest-editorial note [My Copy] European Journal of Soil Biology, Vol. 41, No. 3-4. (July 2005), pp. 55-56. by S. Loureiro posted to no-tag by gurkanbebek on 2009-04-11 22:12:14 as
	Evolving 'omics' technologies for diagnostics of head and neck cancer [My Copy] Brief Funct Genomic Proteomic (9 March 2009), elp004. by Nagathihalli S. Nagaraj posted to hnscc by gurkanbebek on 2009-03-10 13:28:43 as along with 1 person nuin
	Multiple intestinal neoplasia caused by a mutation in the murine homolog of the APC gene [My Copy] Science, Vol. 256, No. 5057. (1 May 1992), pp. 668-670. by L. K. Su, K. W. Kinzler, B. Vogelstein, et al.A. C. Preisinger, A. R. Moser, C. Luongo, K. A. Gould, W. F. Dove posted to no-tag by gurkanbebek on 2009-02-17 16:33:09 as
	Uncovering signal transduction networks from high-throughput data by integer linear programming. [My Copy] Nucleic acids research (13 April 2008) by Xing-Ming M. Zhao, Rui-Sheng S. Wang, Luonan Chen, Kazuyuki Aihara posted to no-tag by gurkanbebek on 2008-05-21 15:15:32 as along with 3 people ptrobajo renatomilani mcoyne
	Defining a Modular Signalling Network from the Fly Interactome [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Anais Baudot, Jean B. Angelelli, Alain Guenoche, Bernard Jacq, Christine Brun posted to no-tag by gurkanbebek on 2008-05-20 13:59:58 as along with 1 person cabbagesofdoom
	Discovering Problem Solutions with low Kolmogorov complexity and high generalization capability [My Copy] No. FKI-194-94. (1994) by J. Schmidhuber posted to no-tag by gurkanbebek on 2007-11-22 16:07:47 as
	Receptor downregulation and desensitization enhance the information processing ability of signalling receptors [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007) by Harish Shankaran, H. Wiley, Haluk Resat posted to pathways signaling by gurkanbebek on 2007-11-11 16:58:05 as
	Presence of multiple incontiguous deleted regions at the long arm of chromosome 18 in head and neck cancer. [My Copy] Clin Cancer Res, Vol. 4, No. 3. (March 1998), pp. 539-544. by V. A. Papadimitrakopoulou, Y. Oh, A. El-Naggar, J. Izzo, G. Clayman, L. Mao posted to and cancer head neck pathways signaling by gurkanbebek on 2007-11-10 21:54:03 as
	Novel Signaling Pathways in Breast Cancer [My Copy] Breast Cancer and Molecular Medicine (2006), pp. 823-839. by Hui-Wen Lo, Shao-Chun Wang, Mien-Chie Hung posted to breast cancer signaling by gurkanbebek on 2007-11-10 04:16:08 as
	A proteomic analysis of cell signaling alterations in colorectal cancer [My Copy] Mol Cell Proteomics (11 September 2007), M700006-MCP200. by Juan Madoz-Gurpide, Marta Canamero, Lydia Sanchez, Jose Solano, Patricia Alfonso, Ignacio J. Casal posted to cancer pathways signaling by gurkanbebek on 2007-11-10 04:02:34 as
	Human Molecular Genetics, Third Edition [My Copy] (21 November 2003) by Tom Strachan, Andrew Read posted to no-tag by gurkanbebek on 2007-10-12 03:20:26 as
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted to no-tag by gurkanbebek on 2007-10-04 02:49:52 as along with 22 people and 2 groups zufar bertelsen tonamswish gbloeb cgaugain ptrobajo pengchy tmmurali dragonrez jfr grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder heliopais AlexanderPico Bioinformatics OPIG
	PathFinder: mining signal transduction pathway segments from protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 8 (13 September 2007), 335. by Gurkan Bebek, Jiong Yang posted to interactions network networks pathways protein signaling by gurkanbebek on 2007-09-28 18:58:33 as along with 2 people guhjy Thomasah
	PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs [My Copy] BMC Bioinformatics, Vol. 7 (27 July 2006), 365. by Sylvain Pitre, Frank Dehne, Albert Chan, et al.Jim Cheetham, Alex Duong, Andrew Emili, Marinella Gebbia, Jack Greenblatt, Mathew Jessulat, Nevan Krogan, Xuemei Luo, Ashkan Golshani posted to no-tag by gurkanbebek on 2007-02-05 18:59:03 as along with 1 person HawkinsJohnC
	Prediction of physical protein-protein interactions [My Copy] posted to no-tag by gurkanbebek on 2007-02-02 14:18:47 as
	Correlated mutations contain information about protein-protein interaction [My Copy] Journal of Molecular Biology, Vol. 271, No. 4. (29 August 1997), pp. 511-523. by F. Pazos posted to coevolution by gurkanbebek on 2007-02-01 21:45:28 as along with 8 people dfdong mgomes chica qluo RebeccaHamer cjeans tale Lombardo_7
	Conserved network motifs allow protein-protein interaction prediction. [My Copy] Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3346-3352. by I. Albert, R. Albert posted to no-tag by gurkanbebek on 2007-02-01 21:38:57 as
	The degree distribution of the generalized duplication model [My Copy] Theoretical Computer Science, Vol. 369, No. 1-3. (15 December 2006), pp. 239-249. by G. Bebek, P. Berenbrink, C. Cooper, T. Friedetzky, J. Nadeau, S. C. Sahinalp posted to no-tag by gurkanbebek on 2007-01-26 22:16:21 as along with 2 people babakap tmmurali
	Subcellular localization of the yeast proteome [My Copy] Genes Dev., Vol. 16, No. 6. (15 March 2002), pp. 707-719. by Anuj Kumar, Seema Agarwal, John A. Heyman, et al.Sandra Matson, Matthew Heidtman, Stacy Piccirillo, Lara Umansky, Amar Drawid, Ronald Jansen, Yang Liu, Kei-Hoi Cheung, Perry Miller, Mark Gerstein, Shirleen G. Roeder, Michael Snyder posted to no-tag by gurkanbebek on 2007-01-24 22:12:20 as along with 3 people and 2 groups lfriedl raiyar dbenn kdl steinmetzlab
	Interaction with the SH3 domain protein Bem1 regulates signaling by the Saccharomyces cerevisiae p21-activated kinase Ste20. [My Copy] Mol Cell Biol, Vol. 25, No. 6. (March 2005), pp. 2177-2190. by M. J. Winters, P. M. Pryciak posted to no-tag by gurkanbebek on 2007-01-08 20:17:47 as
	Fus1p Interacts With Components of the Hog1p Mitogen-Activated Protein Kinase and Cdc42p Morphogenesis Signaling Pathways to Control Cell Fusion During Yeast Mating [My Copy] Genetics, Vol. 166, No. 1. (1 January 2004), pp. 67-77. by Bryce Nelson, Ainslie B. Parsons, Marie Evangelista, et al.Karen Schaefer, Kathy Kennedy, Steven Ritchie, Tracey L. Petryshen, Charles Boone posted to no-tag by gurkanbebek on 2007-01-08 19:39:07 as
	Bee1, a Yeast Protein with Homology to Wiscott-Aldrich Syndrome Protein, Is Critical for the Assembly of Cortical Actin Cytoskeleton [My Copy] J. Cell Biol., Vol. 136, No. 3. (10 February 1997), pp. 649-658. by Rong Li posted to no-tag by gurkanbebek on 2007-01-08 19:29:15 as along with 1 person roys
	Recruitment of the Swi/Snf Complex by Ste12-Tec1 Promotes Flo8-Mss11-Mediated Activation of STA1 Expression [My Copy] Mol. Cell. Biol., Vol. 24, No. 21. (1 November 2004), pp. 9542-9556. by Tae S. Kim, Hye Y. Kim, Jin H. Yoon, Hyen S. Kang posted to no-tag by gurkanbebek on 2007-01-08 16:43:55 as along with 1 person kristallreiner
	Genetic fine-structural analysis of the Saccharomyces cerevisiae alpha-pheromone receptor. [My Copy] Cell Regul, Vol. 2, No. 6. (June 1991), pp. 439-452. by J. B. Konopka, D. D. Jenness posted to no-tag by gurkanbebek on 2007-01-05 22:21:00 as
	Sst2, a negative regulator of pheromone signaling in the yeast Saccharomyces cerevisiae: expression, localization, and genetic interaction and physical association with Gpa1 (the G-protein alpha subunit). [My Copy] Mol Cell Biol, Vol. 16, No. 9. (September 1996), pp. 5194-5209. by H. G. Dohlman, J. Song, D. Ma, W. E. Courchesne, J. Thorner posted to no-tag by gurkanbebek on 2007-01-05 22:17:37 as along with 1 person tmt
	Global analysis of protein localization in budding yeast [My Copy] Nature, Vol. 425, No. 6959. (16 October 2003), pp. 686-691. by Won-Ki Huh, James V. Falvo, Luke C. Gerke, et al.Adam S. Carroll, Russell W. Howson, Jonathan S. Weissman, Erin K. O'Shea posted to no-tag by gurkanbebek on 2006-12-01 22:17:26 as along with 15 people and 2 groups Shibby MarcJungbluth thegoose2 mmcclean carlk tharris Cortel lfriedl opheliav rebeccahainess nirfriedman hplatero koller raiyar iris_2001 C. elegans / WormBase kdl
	Random forest similarity for protein-protein interaction prediction from multiple sources. [My Copy] Pac Symp Biocomput (2005), pp. 531-542. by Y. Qi, J. Klein-Seetharaman, Z. Bar-Joseph posted to no-tag by gurkanbebek on 2006-12-01 14:40:11 as along with 3 people and 1 group anf tmmurali okarsligil Bioinformatics
	Assessment of the reliability of protein-protein interactions and protein function prediction. [My Copy] Pac Symp Biocomput (2003), pp. 140-151. by M. Deng, F. Sun, T. Chen posted to no-tag by gurkanbebek on 2006-12-01 14:26:58 as along with 2 people anf tmmurali
	A relationship between gene expression and protein interactions on the proteome scale: analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiae. [My Copy] Nucleic Acids Res, Vol. 29, No. 17. (1 September 2001), pp. 3513-3519. by A. Grigoriev posted to no-tag by gurkanbebek on 2006-12-01 12:52:49 as along with 3 people behindtherabbit tmmurali kintoki
	A novel genetic system to detect protein-protein interactions. [My Copy] Nature, Vol. 340, No. 6230. (20 July 1989), pp. 245-246. by S. Fields, O. Song posted to no-tag by gurkanbebek on 2006-12-01 12:47:18 as along with 9 people lpfernandes caldavis shivaram helenc Dualsystems grahamc selrac carlk bicko
	A direct comparison of protein interaction confidence assignment schemes [My Copy] BMC Bioinformatics, Vol. 7 (26 July 2006), 360. by Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker posted to no-tag by gurkanbebek on 2006-11-30 22:25:34 as along with 7 people and 1 group anf roys tmmurali lfriedl balajis IbnBio iris_2001 kdl
	Gaining confidence in high-throughput protein interaction networks. [My Copy] Nature biotechnology, Vol. 22, No. 1. (January 2004), pp. 78-85. by Joel S. Bader, Amitabha Chaudhuri, Jonathan M. Rothberg, John Chant posted to no-tag by gurkanbebek on 2006-11-30 14:08:34 as along with 17 people and 1 group aceol carlk chica anf dakelley lawraga wenhui ocs dragonrez lfriedl raiyar cjeans iris_2001 patrycjam patrycja_missiuro Evangelia ellakat kdl
	Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. [My Copy] Journal of molecular biology, Vol. 314, No. 5. (14 December 2001), pp. 1041-1052. by M. Remm, C. E. Storm, E. L. Sonnhammer posted to no-tag by gurkanbebek on 2006-08-24 22:54:10 as along with 15 people and 3 groups biomcgary isimpson thegoose2 operon cgaugain tharris tmmurali indigoviolet Sharpshoot jhc bluto incovoma ninch cerca wiedehopf C. elegans / WormBase EisenLab BioinfoCIPF
	A new method for analyzing protein sequence relationships based on Sammon maps. [My Copy] Protein Sci, Vol. 6, No. 2. (February 1997), pp. 287-293. by D. K. Agrafiotis posted to no-tag by gurkanbebek on 2006-08-23 05:24:51 as
	Where did the BLOSUM62 alignment score matrix come from? [My Copy] Nature biotechnology, Vol. 22, No. 8. (August 2004), pp. 1035-1036. by Sean R. Eddy posted to no-tag by gurkanbebek on 2006-08-18 14:48:02 as along with 7 people and 1 group svozil mcbla ziquje bicko xiaobeizhao rabio reyez Bioinformatics
	Amino acid substitution matrices from protein blocks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 22. (15 November 1992), pp. 10915-10919. by S. Henikoff, J. G. Henikoff posted to no-tag by gurkanbebek on 2006-08-18 14:39:26 as along with 14 people rshe rpetrenko BioNica maria_hauser cmura alefox j3xucite sebk cen4ik kaarsinogen dgront Iden-J_GluR cjeans ashwinma
	Protein Interaction Mapping in C. elegans Using Proteins Involved in Vulval Development [My Copy] Science, Vol. 287, No. 5450. (07 January 2000), pp. 116-122. by Albertha J. Walhout, Raffaella Sordella, Xiaowei Lu, et al.James L. Hartley, Gary F. Temple, Michael A. Brasch, Nicolas Thierry-Mieg, Marc Vidal posted to no-tag by gurkanbebek on 2006-08-14 15:21:08 as along with 4 people and 1 group thegoose2 joseph_x_zhou tharris dragonrez C. elegans / WormBase
	Towards an understanding of complex protein networks [My Copy] Trends in Cell Biology, Vol. 11, No. 3. (1 March 2001), pp. 102-106. by Chandra L. Tucker, Joseph F. Gera, Peter Uetz posted to no-tag by gurkanbebek on 2006-08-14 02:16:57 as
	A computational approach for ordering signal transduction pathway components from genomics and proteomics Data. [My Copy] BMC Bioinformatics, Vol. 5 (25 October 2004) by Y. Liu, H. Zhao posted to no-tag by gurkanbebek on 2006-07-31 14:25:48 as along with 2 people opheliav wnpx
	Inhibition of the EGF-activated MAP kinase signaling pathway by adenosine 3',5'-monophosphate. [My Copy] Science, Vol. 262, No. 5136. (12 November 1993), pp. 1065-1069. by J. Wu, P. Dent, T. Jelinek, A. Wolfman, M. J. Weber, T. W. Sturgill posted to no-tag by gurkanbebek on 2006-07-30 16:40:52 as
	Inhibition by cAMP of Ras-dependent activation of Raf. [My Copy] Science, Vol. 262, No. 5136. (12 November 1993), pp. 1069-1072. by S. J. Cook, F. McCormick posted to no-tag by gurkanbebek on 2006-07-30 16:40:46 as
	Requirement for c-ras proteins during viral oncogene transformation [My Copy] Nature, Vol. 320, No. 6062. (10 April 1986), pp. 540-543. by Mark R. Smith, Steven J. Degudicibus, Dennis W. Stacey posted to no-tag by gurkanbebek on 2006-07-30 16:30:34 as
	Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network [My Copy] Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934. by Trey Ideker, Vesteinn Thorsson, Jeffrey A. Ranish, et al.Rowan Christmas, Jeremy Buhler, Jimmy K. Eng, Roger Bumgarner, David R. Goodlett, Ruedi Aebersold, Leroy Hood posted to no-tag by gurkanbebek on 2006-07-26 22:56:34 as along with 14 people and 3 groups pmendes myzhang rsaito isimpson snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx raiyar thomaskelder shikin Bioinformatics steinmetzlab GeneGo
	Bioinformatic identification of potential autocrine signaling loops in cancers from gene expression profiles [My Copy] Nat Genet, Vol. 29, No. 3. (November 2001), pp. 295-300. by Thomas G. Graeber, David Eisenberg posted to no-tag by gurkanbebek on 2006-07-25 22:49:58 as