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	Local Connectivity of Neutral Networks [My Copy] Bulletin of Mathematical Biology, Vol. 71, No. 2. (February 2009) by Christian M. Reidys posted to neutral-network rna by gzm55 on 2009-05-21 05:42:23 as along with 1 group CBPC@CFC
	The HDV structure in nature [My Copy] posted to pseudoknot rna by gzm55 on 2009-05-20 07:53:22 as
	Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. [My Copy] Nucleic Acids Research, Vol. 9, No. 1. (10 January 1981), pp. 133-148. by M. Zuker, P. Stiegler posted to prediction rna thermodynamics by gzm55 on 2009-05-20 05:44:40 as along with 11 people and 2 groups rb_india NicholasErho saunders agrobledo heliopais evaf marcius arcticrasta mtagaya Hosna guxiyou BioinfoCIPF SGU-CIPF
	Thermodynamic Parameters for an Expanded Nearest-Neighbor Model for Formation of RNA Duplexes with Watson−Crick Base Pairs† [My Copy] Biochemistry, Vol. 37, No. 42. (1 October 1998), pp. 14719-14735. by T. Xia, J. Santalucia, M. E. Burkard, et al.R. Kierzek, S. J. Schroeder, X. Jiao, C. Cox, D. H. Turner posted to rna thermodynamics by gzm55 on 2009-05-20 05:39:34 as along with 4 people ellarond allmensch svozil Hosna
	RNA pseudoknots [My Copy] Current Opinion in Structural Biology, Vol. 2, No. 3. (June 1992), pp. 327-333. by L. Jaeger, Eric Westhof posted to pseudoknot rna by gzm55 on 2009-05-20 05:32:15 as
	Rapid dynamic programming algorithms for RNA secondary structure [My Copy] Advances in Applied Mathematics, Vol. 7, No. 4. (December 1986), pp. 455-464. by Michael S. Waterman, Temple F. Smith posted to algorithm dynamic-programming rna rna-secondary-structure by gzm55 on 2009-05-20 05:21:58 as
	Computation of Generating Functions for Biological Molecules [My Copy] SIAM Journal on Applied Mathematics, Vol. 39, No. 1. (August 1980), pp. 119-133. by J. A. Howell, Temple F. Smith, Michael S. Waterman posted to combinatorics generating-function rna by gzm55 on 2009-05-20 05:12:01 as
	Combinatorics of RNA hairpins and cloverleaves [My Copy] Studies in Applied Mathematics, Vol. 60 (1978), pp. 91-96. by Michael S. Waterman posted to combinatorics rna rna-secondary-structure by gzm55 on 2009-05-20 04:59:18 as
	RNA secondary structure: A complete mathematical analysis [My Copy] Mathematical Biosciences, Vol. 42 (1 January 1978), pp. 257-266. by Temple F. Smith, Michael S. Waterman posted to combinatorics rna rna-secondary-structure by gzm55 on 2009-05-20 04:48:07 as
	Coaxial Stacking of Helixes Enhances Binding of Oligoribonucleotides and Improves Predictions of RNA Folding [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 91, No. 20. (27 September 1994), pp. 9218-9222. by A. E. Walter, D. H. Turner, J. Kim, et al.M. H. Lyttle, P. Muller, D. H. Mathews, M. Zuker posted to prediction rna by gzm55 on 2009-05-20 04:34:14 as along with 1 person Hosna
	Signal recognition particle contains a 7S RNA essential for protein translocation across the endoplasmic reticulum [My Copy] Nature, Vol. 299, No. 5885. (21 October 1982), pp. 691-698. by P. Walter, G. Blobel posted to rna by gzm55 on 2009-05-20 04:06:33 as
	Tree adjoining grammars for RNA structure prediction [My Copy] Theoretical Computer Science, Vol. 210, No. 2. (17 January 1999), pp. 277-303. by Yasuo Uemura, Aki Hasegawa, Satoshi Kobayashi, Takashi Yokomori posted to algorithm prediction rna by gzm55 on 2009-05-20 03:22:11 as along with 4 people and 1 group condon Hosna Kiarostami guxiyou beta
	RNA Structure Prediction [My Copy] Annual Review of Biophysics and Biophysical Chemistry, Vol. 17, No. 1. (June 1988), pp. 167-192. by D. H. Turner, N. Sugimoto, S. M. Freier posted to prediction rna by gzm55 on 2009-05-19 10:24:22 as along with 1 person Hosna
	Estimation of secondary structure in ribonucleic acids [My Copy] Nature, Vol. 230, No. 5293. (9 April 1971), pp. 362-367. by I. Tinoco, O. C. Uhlenbeck, M. D. Levine posted to rna rna-secondary-structure by gzm55 on 2009-05-19 10:08:55 as along with 1 person allmensch
	An expanding universe of noncoding RNAs [My Copy] Science, Vol. 296, No. 5571. (17 May 2002), pp. 1260-1263. by G. Storz posted to rna by gzm55 on 2009-05-19 10:06:22 as along with 1 person and 1 group reyez MuraLab
	RNA structures with pseudo-knots: Graph-theoretical, combinatorial, and statistical properties [My Copy] Bulletin of Mathematical Biology, Vol. 61, No. 3. (1 May 1999), pp. 437-467. by Christian Haslinger, Peter F. Stadler posted to combinatorics graph pseudoknot rna statistics by gzm55 on 2009-05-19 09:17:33 as along with 1 person jmallos
	A new algorithm for RNA secondary structure design [My Copy] Journal of Molecular Biology, Vol. 336, No. 3. (20 February 2004), pp. 607-624. by M. Andronescu, A. P. Fejes, F. Hutter, H. H. Hoos, A. Condon posted to algorithm design inverse-fold rna rna-secondary-structure by gzm55 on 2009-05-19 09:07:17 as along with 6 people and 4 groups marcius eckart_bindewald gane5h cthachuk mgaldzic smallbadguy 18th-century_history_culture_and_society BioinfoCIPF SGU-CIPF CHIP
	The language of genes. [My Copy] Nature, Vol. 420, No. 6912. (14 November 2002), pp. 211-217. by David B. Searls posted to gene by gzm55 on 2009-05-19 08:59:54 as along with 9 people and 4 groups daforerog gemammr garyfeng ataheri okarsligil bayesian vassilyl soramame_0518 sconlan GEB ReadingLab plant-development Bioinformatics
	HotKnots: heuristic prediction of RNA secondary structures including pseudoknots [My Copy] RNA, Vol. 11, No. 10. (October 2005), pp. 1494-1504. by J. Ren, B. Rastegari, A. Condon, H. H. Hoos posted to heuristic-algorithm prediction pseudoknot rna by gzm55 on 2009-05-19 08:56:24 as along with 9 people and 3 groups haarcuba rb_india marcius eckart_bindewald arcticrasta condon Hosna jarasch guxiyou beta BioinfoCIPF SGU-CIPF
	A combinatorial framework for RNA tertiary interaction [My Copy] (8 December 2007) by Jing Qin, Christian M. Reidys posted to combinatorics pseudoknot rna by gzm55 on 2009-05-19 08:51:53 as along with 1 group CBPC@CFC
	Generic properties of combinatory maps: neutral networks of RNA secondary structures [My Copy] Bulletin of Mathematical Biology, Vol. 59, No. 2. (March 1997), pp. 339-397. by Christian M. Reidys, Peter F. Stadler, P. Schuster posted to combinatorics neutral-network rna rna-secondary-structure by gzm55 on 2009-05-19 08:40:28 as along with 3 people VGreiff evaf alexisgallagher
	Canonical RNA pseudoknot structures [My Copy] Journal of Computational Biology, Vol. 15, No. 10. (December 2008), pp. 1257-1273. by Gang Ma, Christian M. Reidys posted to combinatorics pseudoknot rna by gzm55 on 2009-05-19 08:24:26 as along with 1 group CBPC@CFC
	Folding 3-noncrossing RNA pseudoknot structures [My Copy] (29 September 2008) by Fenix W. Huang, Wade W. Peng, Christian M. Reidys posted to algorithm dynamic-programming prediction pseudoknot rna by gzm55 on 2009-05-19 07:54:46 as along with 1 group CBPC@CFC
	Combinatorics of RNA Structures with Pseudoknots [My Copy] Bulletin of Mathematical Biology, Vol. 70, No. 1. (1 January 2008), pp. 45-67. by Emma Y. Jin, Jing Qin, Christian M. Reidys posted to combinatorics pseudoknot rna by gzm55 on 2009-05-19 07:45:33 as along with 1 group CBPC@CFC
	Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics [My Copy] BMC bioinformatics, Vol. 5 (4 August 2004) by J. Reeder, R. Giegerich posted to prediction rna rna-secondary-structure thermodynamics by gzm55 on 2009-05-19 07:36:44 as along with 8 people and 3 groups haarcuba rb_india guxiyou marcius eckart_bindewald arcticrasta condon Hosna beta BioinfoCIPF SGU-CIPF
	A dynamic programming algorithm for RNA structure prediction including pseudoknots [My Copy] Journal of Molecular Biology, Vol. 285, No. 5. (05 February 1999), pp. 2053-2068. by Elena Rivas, Sean R. Eddy posted to algorithm dynamic-programming prediction pseudoknot rna by gzm55 on 2009-05-19 07:24:01 as along with 13 people and 1 group rb_india NicholasErho mjoach evaf balajis eckart_bindewald arcticrasta dquest condon Hosna jarasch physics guxiyou beta
	An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules [My Copy] Nucleic Acids Research, Vol. 12, No. 1Part1. (11 January 1984), pp. 31-44. by Catherine Papanicolaou, Manolo Gouy, Jacques Ninio posted to prediction rna thermodynamics by gzm55 on 2009-05-19 07:16:54 as
	RNA and the epigenetic regulation of X chromosome inactivation [My Copy] Cell, Vol. 93, No. 3. (1 May 1998), pp. 305-308. by B. Panning, R. Jaenisch posted to inactivation rna by gzm55 on 2009-05-19 07:11:05 as
	Fast Algorithm for Predicting the Secondary Structure of Single-Stranded RNA [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 77, No. 11. (1 November 1980), pp. 6309-6313. by Ruth Nussinov, Ann B. Jacobson posted to algorithm rna rna-secondary-structure by gzm55 on 2009-05-19 07:01:22 as along with 6 people and 1 group agrobledo heliopais idoerg arcticrasta condon Hosna beta
	The structural basis of ribosome activity in peptide bond synthesis [My Copy] Science, Vol. 289, No. 5481. (11 August 2000), pp. 920-930. by Poul Nissen, Jeffrey Hansen, Nenad Ban, Peter B. Moore, Thomas A. Steitz posted to ribosome rna by gzm55 on 2009-05-19 06:51:46 as along with 5 people and 1 group A_Coletta_Thesis reyez jarasch ThomasBecker bratwurst Structural Biology Group TorVergata
	An RNA folding method capable of identifying pseudoknots and base triples [My Copy] Bioinformatics, Vol. 14, No. 8. (1 September 1998), pp. 691-699. by J. E. Tabaska, R. B. Cary, H. N. Gabow, G. D. Stormo posted to prediction pseudoknot rna rna-secondary-structure by gzm55 on 2009-05-19 06:47:04 as along with 2 people arcticrasta guxiyou
	Graph-theoretic approach to RNA modeling using comparative data [My Copy] Proceedings International Conference on Intelligent Systems for Molecular Biology, Vol. 3 (1995), pp. 75-80. by R. B. Cary, G. D. Stormo posted to design graph rna by gzm55 on 2009-05-19 06:02:37 as along with 1 person guxiyou
	An Efficient Implementation of Edmonds' Algorithm for Maximum Matching on Graphs [My Copy] Journal of the Association for Computing Machinery, Vol. 23, No. 2. (April 1976), pp. 221-234. by Harold N. Gabow posted to algorithm graph matching by gzm55 on 2009-05-18 06:13:37 as
	Maximum matching and polyhedron with $0,1$-vertices [My Copy] Journal of Research of the National Bureau of Standards, Vol. 69B (1965), pp. 125-130. by J. Edmonds posted to graph matching by gzm55 on 2009-05-18 05:27:11 as
	A comparison of thermodynamic foldings with comparatively derived structures of 16S and 16S-like rRNAs [My Copy] RNA, Vol. 1, No. 6. (August 1995), pp. 559-574. by D. A. Konings, R. R. Gutell posted to design rna thermodynamics by gzm55 on 2009-05-18 04:59:34 as
	RNA pseudoknot prediction in energy-based models [My Copy] Journal of Computational Biology, Vol. 7, No. 3-4. (7 August 2000), pp. 409-427. by R. B. Lyngsø, C. N. S. Pedersen posted to inverse-fold pseudoknot rna thermodynamics by gzm55 on 2009-05-18 04:25:44 as along with 5 people and 1 group evaf arcticrasta condon Hosna guxiyou beta
	Domain structure of the ribozyme from eubacterial ribonuclease P. [My Copy] RNA (New York, N.Y.), Vol. 2, No. 6. (June 1996), pp. 551-563. by A. Loria, T. Pan posted to rna structure by gzm55 on 2009-05-18 04:16:11 as
	An Abundant Class of Tiny RNAs with Probable Regulatory Roles in Caenorhabditis elegans [My Copy] Science, Vol. 294, No. 5543. (26 October 2001), pp. 858-862. by Nelson C. Lau, Lee P. Lim, Earl G. Weinstein, David P. Bartel posted to rna by gzm55 on 2009-05-18 04:04:48 as along with 8 people and 2 groups haarcuba thegoose2 SaraNasser tharris tardigrade mtagaya heliopais elfar C. elegans / WormBase microRNA
	Identification of novel genes coding for small expressed RNAs. [My Copy] Science, Vol. 294, No. 5543. (26 October 2001), pp. 853-858. by M. Lagos-Quintana, R. Rauhut, W. Lendeckel, T. Tuschl posted to molecular rna by gzm55 on 2009-05-18 03:59:29 as along with 7 people and 2 groups thegoose2 daforerog SaraNasser tharris mtagaya heliopais elfar C. elegans / WormBase microRNA
	Some molecular details of the secondary structure of ribonucleic acid [My Copy] Nature, Vol. 188 (8 October 1960), pp. 98-101. by Jaces R. Fresco, B. M. Alberts, P. Doty posted to molecular rna by gzm55 on 2009-05-18 03:56:04 as along with 1 person elfar
	Fast Folding and Comparison of RNA Secondary Structures [My Copy] Chemical Monthly, Vol. 125 (February 1994), pp. 167-188. by Ivo L. Hofacker, Walter Fontana, Peter F. Stadler, Sebastian L. Bonhoeffer, Manfred Tacker, Peter Schuster posted to computing dynamic-programming editing parallel prediction rna rna-secondary-structure tree by gzm55 on 2009-05-18 03:40:08 as along with 5 people NicholasErho stanley ilh mtw guxiyou
	Statistics of canonical RNA pseudoknot structures [My Copy] Journal of Theoretical Biology, Vol. 253, No. 3. (07 August 2008), pp. 570-578. by Fenix W. Huang, Christian M. Reidys posted to pseudoknot rna statistics by gzm55 on 2009-05-18 03:18:04 as along with 1 group CBPC@CFC
	Paradigms for computational nucleic acid design [My Copy] Nucleic Acids Research, Vol. 32, No. 4. (27 February 2004), pp. 1392-1403. by Robert M. Dirks, Milo Lin, Erik Winfree, Niles A. Pierce posted to design inverse-fold paradigm rna by gzm55 on 2009-05-18 02:59:18 as along with 2 people Vincent_Rouilly stsaft
	Inverse folding of RNA pseudoknot structures [My Copy] (6 May 2009) by James Z. Gao, Linda Y. Li, Christian M. Reidys posted to dynamic-programming heuristic-algorithm inverse-fold neutral-network nonplanar-structure prediction rna by gzm55 on 2009-05-18 02:23:31 as along with 1 group CBPC@CFC
	Prediction of RNA Secondary Structure [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 68, No. 11. (15 November 1971), pp. 2682-2685. by Charles Delisi, Donald M. Crothers posted to inverse-fold prediction rna rna-secondary-structure by gzm55 on 2009-05-18 02:00:03 as
	Predicting RNA pseudoknot folding thermodynamics [My Copy] Nucleic Acids Research, Vol. 34, No. 9. (18 May 2006), pp. 2634-2652. by Song Cao, Shi J. Chen posted to biophysics prediction pseudoknot rna thermodynamics by gzm55 on 2009-05-18 01:29:54 as along with 5 people and 1 group condon Hosna apop physics Kiarostami beta
	INFO-RNA---a fast approach to inverse RNA folding [My Copy] Bioinformatics, Vol. 22, No. 15. (1 August 2006), pp. 1823-1831. by Anke Busch, Rolf Backofen posted to design inverse-fold rna by gzm55 on 2009-05-15 12:56:50 as along with 1 person and 1 group condon beta
	Stability of ribonucleic acid double-stranded helices [My Copy] Journal of Molecular Biology, Vol. 86, No. 4. (15 July 1974), pp. 843-853. by Philip N. Borer, B. Dengler, I. Tinoco, O. C. Uhlenbeck posted to rna by gzm55 on 2009-05-15 12:21:06 as
	Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots [My Copy] Discrete Applied Mathematics, Vol. 104, No. 1-3. (15 August 2000), pp. 45-62. by Tatsuya Akutsu posted to approximation-algorithms computational-biology dynamic-programming pseudoknot rna-secondary-structure by gzm55 on 2009-05-15 11:57:02 as along with 2 people and 1 group condon Hosna beta
	Combinatorial design of pseudoknot RNA [My Copy] Advances in Applied Mathematics, Vol. 42, No. 2. (11 February 2009), pp. 135-151. by Emma Y. Jin, Christian M. Reidys posted to combinatorics core-structure generating-function k-noncrossing rna singularity-analysis stack transfer-theorem by gzm55 on 2009-05-15 11:16:58 as along with 1 group CBPC@CFC

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rna	46
prediction	14
pseudoknot	14
rna-secondary-structure	12
combinatorics	9
algorithm	7
thermodynamics	7
dynamic-programming	6
inverse-fold	6
design	5
graph	4
neutral-network	3
generating-function	2
heuristic-algorithm	2
matching	2
molecular	2
statistics	2
approximation-algorithms	1
biophysics	1
computational-biology	1
computing	1
core-structure	1
editing	1
gene	1
inactivation	1
k-noncrossing	1
nonplanar-structure	1
paradigm	1
parallel	1
ribosome	1
singularity-analysis	1
stack	1
structure	1
transfer-theorem	1
tree	1

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