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hdopazo's selection [30 articles]

Recent papers added to hdopazo's library classified by the tag selection. You can also see everyone's selection.
  • Determinants of Adaptive Evolution at the Molecular Level: the Extended Complexity Hypothesis
    Molecular Biology and Evolution, Vol. 22, No. 2., 200.
    by Stephane Aris-Brosou
    posted to signatures selection positive adaptation by hdopazo on 2008-09-24 16:54:52 as ** along with 1 person and 1 group penka Nie
  • Sexual Selection and Maintenance of Sex: Evidence from Comparisons of Rates of Genomic Accumulation of Mutations and Divergence of Sex-Related Genes in Sexual and Hermaphroditic Species of Caenorhabditis
    Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 972-979.
    by Carlo G Artieri, Wilfried Haerty, Bhagwati P Gupta, Rama S Singh
    posted to caenorhabditis genomes selection sexual by hdopazo on 2008-08-26 14:57:08 as **
  • Patterns of Positive Selection in Six Mammalian Genomes
    PLoS Genet, Vol. 4, No. 8. (2008), e1000144.
    by Carolin Kosiol, Tomáš Vinař, Rute R da Fonseca, Melissa J Hubisz, Carlos D Bustamante, Rasmus Nielsen, Adam Siepel
    posted to genomes genomics mammals positive selection by hdopazo on 2008-08-22 13:06:40 as ** along with 4 people bpcusack gjuggler cabbagesofdoom djkt
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
    posted to drosophila genomes genomics positive selection by hdopazo on 2008-08-22 12:16:36 as ** along with 20 people and 6 groups pengchy operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 CharlesM hpaces caseybrown emptyhb urgi noor PetrovLab isimpson balicea cisevol Bioinformatics EisenLab csb_journal_club_public Berkeley Mycology BergmanLab Drosophila-Genetics-Genomics-2008
  • PAML 4: Phylogenetic Analysis by Maximum Likelihood
    Mol Biol Evol (4 May 2007), msm088.
    by Ziheng Yang
    posted to adaptation compgenomics positive selection by hdopazo on 2008-02-05 15:32:30 as ** along with 9 people and 1 group druvus operon akifumi BioNica stajich ryanraaum RamuAnandakrishnan CharlesM Ema Berkeley Mycology
  • Recent acceleration of human adaptive evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (26 December 2007), pp. 20753-20758.
    by John Hawks, Eric T Wang, Gregory M Cochran, Henry C Harpending, Robert K Moyzis
    posted to evolution human positive selection by hdopazo on 2008-02-04 17:33:37 as ** along with 9 people and 3 groups balicea laharrin shoshin cannon qwermish wsjames coyotetraxx candypmcg hpaces BioinfoCIPF Oxford Virology Fasting, food and evolution
  • Statistical methods for detecting molecular adaptation.
    TRENDS IN ECOLOGY AND EVOLUTION, Vol. 15, No. 12. (1 December 2000), pp. 496-503.
    by Z Yang, JP Bielawski
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:51:39 as ** along with 2 people and 3 groups stevanspringer clearbluespring Bioinformatics FAB-lab BioinfoCIPF
  • Rates of nucleotide substitution and mammalian nuclear gene evolution. Approximate and maximum-likelihood methods lead to different conclusions.
    Genetics, Vol. 156, No. 3. (November 2000), pp. 1299-1308.
    by JP Bielawski, KA Dunn, Z Yang
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:51:12 as ** along with 1 group BioinfoCIPF
  • Evolution of the Zfx and Zfy genes: rates and interdependence between the genes.
    Mol Biol Evol, Vol. 10, No. 2. (March 1993), pp. 271-281.
    by P Pamilo, NO Bianchi
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:43:59 as ** along with 1 group BioinfoCIPF
  • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models.
    Mol Biol Evol, Vol. 17, No. 1. (January 2000), pp. 32-43.
    by Z Yang, R Nielsen
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:42:53 as ** along with 8 people and 1 group bjorns fernan BioNica timflutre Garamonfok ankur_iitg RamuAnandakrishnan Ema BioinfoCIPF
  • New methods for estimating the numbers of synonymous and nonsynonymous substitutions.
    J Mol Evol, Vol. 40, No. 2. (February 1995), pp. 190-226.
    by Y Ina
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:39:12 as ** along with 1 group BioinfoCIPF
  • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes.
    Mol Biol Evol, Vol. 2, No. 2. (March 1985), pp. 150-174.
    by WH Li, CI Wu, CC Luo
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:38:44 as ** along with 1 person and 1 group bjorns BioinfoCIPF
  • Unbiased estimation of the rates of synonymous and nonsynonymous substitution.
    J Mol Evol, Vol. 36, No. 1. (January 1993), pp. 96-99.
    by WH Li
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:35:07 as ** along with 1 group BioinfoCIPF
  • A codon-based model of nucleotide substitution for protein-coding DNA sequences.
    Mol Biol Evol, Vol. 11, No. 5. (September 1994), pp. 725-736.
    by N Goldman, Z Yang
    posted to adaptation positive selection w by hdopazo on 2006-09-08 10:00:07 as ** along with 6 people and 1 group BioNica usagi-kirin mingzhi gjuggler AtoZ CharlesM BioinfoCIPF
  • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
    Mol Biol Evol, Vol. 3, No. 5. (September 1986), pp. 418-426.
    by M Nei, T Gojobori
    posted to adaptation positive selection w by hdopazo on 2006-09-08 09:55:19 as ** along with 5 people and 1 group jmeppley usagi-kirin ankur_iitg friendpine CharlesM BioinfoCIPF
  • Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application.
    J Mol Evol, Vol. 16, No. 1. (September 1980), pp. 23-36.
    by T Miyata, T Yasunaga
    posted to adaptation positive selection w by hdopazo on 2006-09-08 09:44:59 as ** along with 1 group BioinfoCIPF
  • A Map of Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 4, No. 3. (7 March 2006)
    by Benjamin F F Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K K Pritchard
    posted to genomics positive selection snp by hdopazo on 2006-08-11 15:21:28 as ** along with 20 people and 7 groups stevanspringer kentsis bpb balajis indigoviolet ejeffery pradiptaray madhadron breden tiago larios ashandanj livingthingdan djkt mbeautru grahamc suizan shoshin iris42 dmc Bioinformatics EisenLab FAB-lab SFUAntibodyResearch BioinfoCIPF livingthing Durbin group
  • Robust inference of positive selection from recombining coding sequences.
    Bioinformatics (7 August 2006)
    by Konrad Scheffler, Darren P P Martin, Cathal Seoighe
    posted to positive recombination selection by hdopazo on 2006-08-11 15:02:39 as ** along with 2 people and 1 group shehroz Natasha BioinfoCIPF
  • Genomic signatures of positive selection in humans and the limits of outlier approaches
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 980-989.
    by Joanna L Kelley, Jennifer Madeoy, John C Calhoun, Willie Swanson, Joshua M Akey
    posted to genomics popgen positive selection snp by hdopazo on 2006-08-11 14:45:38 as ** along with 1 person and 1 group djkt BioinfoCIPF
  • A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations.
    Bioinformatics (15 July 2006)
    by Chun Zhang, Dione K K Bailey, Tarif Awad, Guoying Liu, Guoliang Xing, Manqiu Cao, Venu Valmeekam, Jacques Retief, Hajime Matsuzaki, Margaret Taub, Mark Seielstad, Giulia C C Kennedy
    posted to genomics human popgen positive selection snp by hdopazo on 2006-08-11 14:33:28 as ** along with 1 person and 1 group iris42 BioinfoCIPF
  • Natural selection on protein-coding genes in the human genome
    Nature, Vol. 437, No. 7062., pp. 1153-1157.
    by Carlos D Bustamante, Adi Fledel-Alon, Scott Williamson, Rasmus Nielsen, Melissa T Hubisz, Stephen Glanowski, David M Tanenbaum, Thomas J White, John J Sninsky, Ryan D Hernandez, Daniel Civello, Mark D Adams, Michele Cargill, Andrew G Clark
    posted to human popgen positive selection by hdopazo on 2006-08-10 11:46:39 as ** along with 15 people and 5 groups stevanspringer operon jwortman aprasad dayjm balajis marcius dpollard djkt JBEgwa01 ramensky Garamonfok iris42 dmc shoshin EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
  • Positive selection in MAOA gene is human exclusive: determination of the putative amino acid change selected in the human lineage.
    Hum Genet, Vol. 115, No. 5. (October 2004), pp. 377-386.
    by AM Andrés, M Soldevila, A Navarro, KK Kidd, B Oliva, J Bertranpetit
    posted to human popgen positive selection by hdopazo on 2006-08-10 11:45:24 as ** along with 1 person and 1 group rhancock BioinfoCIPF
  • A scan for positively selected genes in the genomes of humans and chimpanzees.
    PLoS Biol, Vol. 3, No. 6. (June 2005)
    by R Nielsen, C Bustamante, AG Clark, S Glanowski, TB Sackton, MJ Hubisz, A Fledel-Alon, DM Tanenbaum, D Civello, TJ White, J J Sninsky, MD Adams, M Cargill
    posted to compgenomics human positive selection by hdopazo on 2006-08-10 11:44:05 as ** along with 6 people and 3 groups stevanspringer jwortman bpb penka djkt iris42 Nie FAB-lab BioinfoCIPF
  • Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.
    Science, Vol. 302, No. 5652. (12 December 2003), pp. 1960-1963.
    by AG Clark, S Glanowski, R Nielsen, PD Thomas, A Kejariwal, MA Todd, DM Tanenbaum, D Civello, F Lu, B Murphy, S Ferriera, G Wang, X Zheng, TJ White, JJ Sninsky, MD Adams, M Cargill
    posted to compgenomics human positive selection by hdopazo on 2006-08-10 11:43:15 as ** along with 4 people and 1 group ejeffery gjuggler djkt Ema BioinfoCIPF
  • Whole-Genome Patterns of Common DNA Variation in Three Human Populations
    Science, Vol. 307, No. 5712. (18 February 2005), pp. 1072-1079.
    by David A Hinds, Laura L Stuve, Geoffrey B Nilsen, Eran Halperin, Eleazar Eskin, Dennis G Ballinger, Kelly A Frazer, David R Cox
    posted to human positive selection snp by hdopazo on 2006-08-10 11:41:13 as ** along with 6 people and 1 group jshapiro mercaptan akeyj saxonov Archaeogenetics djkt BioinfoCIPF
  • Detecting recent positive selection in the human genome from haplotype structure
    Nature, Vol. 419, No. 6909. (24 October 2002), pp. 832-837.
    by Pardis C Sabeti, David E Reich, John M Higgins, Haninah Z Levine, Daniel J Richter, Stephen F Schaffner, Stacey B Gabriel, Jill V Platko, Nick J Patterson, Gavin J Mcdonald, Hans C Ackerman, Sarah J Campbell, David Altshuler, Richard Cooper, Dominic Kwiatkowski, Ryk Ward, Eric S Lander
    posted to human popgen positive selection by hdopazo on 2006-08-10 11:37:22 as ** along with 5 people and 1 group brant ausiddiqui djkt jasonflannick balicea BioinfoCIPF
  • Positive Natural Selection in the Human Lineage
    Science, Vol. 312, No. 5780. (16 June 2006), pp. 1614-1620.
    by PC Sabeti, SF Schaffner, B Fry, J Lohmueller, P Varilly, O Shamovsky, A Palma, TS Mikkelsen, D Altshuler, ES Lander
    posted to human popgen positive selection by hdopazo on 2006-08-10 11:32:12 as ** along with 7 people and 4 groups dchughes cmm larios djkt ramensky iris42 jasonflannick FAB-lab G4ID BioinfoCIPF Genetics-of-Gambling
  • Synonymous and nonsynonymous rate variation in nuclear genes of mammals
    J Mol Evol., Vol. 46 (1998), pp. 409-418.
    by Nielsen
    posted to adaptation positive selection by hdopazo on 2006-07-21 17:37:58 as read along with 1 group BioinfoCIPF
  • Adaptive Molecular Evolution
    (2003)
    by Z Yang
    edited by D Balding, M Bishop, Cannings
    posted to adaptation positive selection by hdopazo on 2006-07-21 17:37:45 as read along with 1 group BioinfoCIPF
  • Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome.
    PLoS Comput Biol, Vol. 2, No. 4. (April 2006)
    by L Arbiza, J Dopazo, H Dopazo
    posted to chimp genomics human positive selection by hdopazo on 2006-07-20 13:59:43 as ***** along with 5 people and 3 groups operon marcius jordibc Garamonfok rvosa BioinfoCIPF SGU-CIPF FAB-lab
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