helliontroy's library 156 articles Export

	Chemical vocabularies and ontologies for bioinformatics [My Copy] In Proceedings of the 2003 International Chemical Information Conference, pp. 144-162. by K. Degtyarenko posted to hlj-alignerror hlj-ontalign ontology by helliontroy on 2006-12-28 19:20:34 as along with 1 group biomedical-nlp
	Creating the Gene Ontology Resource: Design and Implementation [My Copy] Genome Research, Vol. 11, No. 8. (1 August 2001), pp. 1425-1433. by The G. Consortium posted to hlj-alignerror hlj-ontalign ontology by helliontroy on 2006-12-28 19:14:45 as along with 7 people and 1 group vkwn mshossain sgoetz PunkRock CitoJam marck dgront biomedical-nlp
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted to hlj-alignerror hlj-ontalign ontology by helliontroy on 2006-12-28 19:13:47 as along with 74 people and 7 groups Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
	Mapping data elements to terminological resources for integrating biomedical data sources [My Copy] BMC Bioinformatics, Vol. 7, No. Suppl 3. (2006) by Fleur Mougin, Anita Burgun, Olivier Bodenreider posted to ontology by helliontroy on 2006-12-14 21:13:38 as along with 1 person and 1 group beanformer biomedical-nlp
	Negation in English Speech and Writing: A Study in Variation [My Copy] Language, Vol. 69, No. 3. (1993), pp. 590-593. by Gunnel Tottie posted to negation by helliontroy on 2006-12-06 21:59:08 as along with 1 group biomedical-nlp
	Filling preposition-based templates to capture information from medical abstracts. [My Copy] Pac Symp Biocomput (2002), pp. 350-361. by G. Leroy, H. Chen posted to relation-extraction by helliontroy on 2006-12-06 21:45:53 as along with 2 people and 2 groups yas mircea T_lab biomedical-nlp
	A methodology for automatic term recognition [My Copy] In Proceedings of the 15th conference on Computational linguistics (1994), pp. 1034-1038. by Sophia Ananiadou posted to entity-identification by helliontroy on 2006-12-06 20:31:13 as along with 1 group biomedical-nlp
	A shallow parser based on closed-class words to capture relations in biomedical text. [My Copy] J Biomed Inform, Vol. 36, No. 3. (June 2003), pp. 145-158. by G. Leroy, H. Chen, J. D. Martinez posted to coordination negation relation-extraction by helliontroy on 2006-12-06 18:52:38 as along with 1 person and 2 groups irenas dbk-lab biomedical-nlp
	BRENDA, the enzyme database: updates and major new developments [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D431-433. by Ida Schomburg, Antje Chang, Christian Ebeling, et al.Marion Gremse, Christian Heldt, Gregor Huhn, Dietmar Schomburg posted to hlj-alignerror by helliontroy on 2006-12-06 18:29:31 as along with 5 people and 2 groups flbarroso alexg jberro shung sim82 biomedical-nlp Projet_ENSIMAG
	Automatic sense disambiguation using machine readable dictionaries: how to tell a pine cone from an ice cream cone [My Copy] In SIGDOC '86: Proceedings of the 5th annual international conference on Systems documentation (1986), pp. 24-26. by Michael Lesk posted to hlj-alignerror by helliontroy on 2006-12-06 18:25:32 as along with 3 people and 1 group ifalk sboisen hehrig biomedical-nlp
	Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies. [My Copy] Pac Symp Biocomput (2006), pp. 28-39. by H. L. Johnson, K. B. Cohen, W. A. Baumgartner, et al.Z. Lu, M. Bada, T. Kester, H. Kim, L. Hunter posted to hlj-alignerror me by helliontroy on 2006-12-06 18:24:15 as along with 1 person and 1 group dullhunk biomedical-nlp
	A Resource for Constructing Customized Test Suites for Molecular Biology Entity Identification Systems [My Copy] In HLT-NAACL 2004 Workshop: BioLINK 2004, Linking Biological Literature, Ontologies and Databases (May 2004), pp. 1-8. by Bretonnel K. Cohen, Lorraine Tanabe, Shuhei Kinoshita, Lawrence Hunter edited by Lynette Hirschman, James Pustejovsky posted to hlj-alignerror by helliontroy on 2006-12-06 18:17:12 as along with 1 group biomedical-nlp
	Abbreviations in biomedical text [My Copy] In Text mining for biology and biomedicine (2006), pp. 99-119. by Jt Chang, H. Schutze edited by S. Ananiadou, J. Mcnaught posted to hlj-alignerror by helliontroy on 2006-12-06 18:15:19 as along with 1 group biomedical-nlp
	An ontology for cell types [My Copy] Genome Biology, Vol. 6, No. 2. (2005), R21. by Jonathan Bard, Seung Rhee, Michael Ashburner posted to hlj-alignerror hlj-ontalign ontology by helliontroy on 2006-12-06 18:10:40 as along with 4 people and 2 groups Scis0000002 setar yas josepe T_lab biomedical-nlp
	Concept Recognition, Information Retrieval, and Machine Learning in Genomics Question-Answering [My Copy] In TREC Notebook (2006) by Gregory J. Caporaso, William A. Baumgartner, Hyunmin Kim, et al.Zhiyong Lu, Helen L. Johnson, Olga Medvedeva, Anna Lindemann, Lynne Fox, Elizabeth K. White, Bretonnel K. Cohen, Lawrence Hunter posted to trec06 by helliontroy on 2006-12-04 21:42:18 as along with 1 person and 1 group caporaso biomedical-nlp
	Biomedical information extraction with predicate-argument structure patterns [My Copy] In SMBM (2005) by Akane Yakushiji, Yusuke Miyao, Yuka Tateisi, Junichi Tsujii posted to pas by helliontroy on 2006-11-28 00:43:47 as along with 1 person and 1 group josrod biomedical-nlp
	Bootstrapping the recognition and anaphoric linking of named entities in Drosophila articles. [My Copy] Pac Symp Biocomput (2006), pp. 100-111. by A. Vlachos, C. Gasperin, I. Lewin, T. Briscoe posted to psb06 by helliontroy on 2006-11-28 00:37:41 as along with 2 people and 1 group balex vlachmore biomedical-nlp
	The potential use of SUISEKI as a protein interaction discovery tool. [My Copy] Genome Inform, Vol. 12 (2001), pp. 123-134. by C. Blaschke, A. Valencia posted to ppi by helliontroy on 2006-11-28 00:36:45 as along with 1 group biomedical-nlp
	Bayesian models of human sentence processing [My Copy] (1998) by N. Srini, D. Jurafsky posted to review by helliontroy on 2006-11-28 00:35:46 as along with 2 people and 1 group josrod spinaltap526 biomedical-nlp
	Automatic labeling of semantic roles [My Copy] Comput. Linguist., Vol. 28, No. 3. (September 2002), pp. 245-288. by Daniel Gildea, Daniel Jurafsky posted to semantic-label by helliontroy on 2006-11-28 00:34:48 as along with 4 people and 1 group aliku bhaddow rion lillejul biomedical-nlp
	Linking molecular function and biological process terms in the ontology for gene expression data analysis [My Copy] Engineering in Medicine and Biology Society, 2004. EMBC 2004. Conference Proceedings. 26th Annual International Conference of the, Vol. 2 (2004), pp. 2984-2986 Vol.4. by M. Dejongh, P. Van Dort, B. Ramsay posted to ontology by helliontroy on 2006-11-28 00:30:10 as along with 1 group biomedical-nlp
	A baseline feature set for learning rhetorical zones using full articles in the biomedical domain [My Copy] SIGKDD Explor. Newsl., Vol. 7, No. 1. (June 2005), pp. 52-58. by Tony Mullen, Yoko Mizuta, Nigel Collier posted to fulltext-discourse by helliontroy on 2006-11-28 00:24:56 as along with 3 people and 2 groups robert85 yas caporaso T_lab biomedical-nlp
	Zone analysis in biology articles as a basis for information extraction [My Copy] International Journal of Medical Informatics, Vol. 75, No. 6. (17 June 2006), pp. 468-487. by Y. Mizuta, A. Korhonen, T. Mullen, N. Collier posted to fulltext-discourse by helliontroy on 2006-11-28 00:23:58 as along with 4 people and 3 groups Effie vlachmore robert85 yas NaCTeM T_lab biomedical-nlp
	Gene name extraction using FlyBase resources [My Copy] In Proceedings of the ACL 2003 workshop on Natural language processing in biomedicine (2003), pp. 1-8. by Alex Morgan, Lynette Hirschman, Alexander Yeh, Marc Colosimo posted to entity-identification by helliontroy on 2006-11-28 00:19:06 as along with 1 person and 1 group vlachmore biomedical-nlp
	A relevance detection approach to gene annotation [My Copy] by Wen-Juan Hou, Chin Lee, Kevin H. Lin, Hsin-Hsi Chen posted to annotation by helliontroy on 2006-11-28 00:17:02 as along with 1 group biomedical-nlp
	Classifying Biological Full-Text Articles for Multi-Database Curation. [My Copy] In EACL (2006) by Wen J. Hou, Chih Lee, Hsin H. Chen posted to fulltext-use by helliontroy on 2006-11-28 00:15:41 as along with 1 group biomedical-nlp
	Automatically Generating Extraction Patterns from Untagged Text [My Copy] In AAAI/{IAAI}, Vol. 2 (1996), pp. 1044-1049. by Ellen Riloff posted to patterns by helliontroy on 2006-11-28 00:10:39 as along with 1 person and 1 group scis0000001 biomedical-nlp
	The effect of textual variation on concept based information retrieval. [My Copy] Proc AMIA Annu Fall Symp (1996), pp. 373-377. by A. R. Aronson posted to variation by helliontroy on 2006-11-28 00:08:32 as along with 1 group biomedical-nlp
	A comparison of string distance metrics for name-matching tasks [My Copy] (2003) by W. Cohen, P. Ravikumar, S. Fienberg posted to string-distance by helliontroy on 2006-11-28 00:07:01 as along with 3 people and 1 group ssn pdlug seabay biomedical-nlp
	PhenoGO: assigning phenotypic context to gene ontology annotations with natural language processing. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2006), pp. 64-75. by Yves Lussier, Tara Borlawsky, Daniel Rappaport, Yang Liu, Carol Friedman posted to psb06 by helliontroy on 2006-11-28 00:04:04 as along with 3 people and 1 group fisherp aconesa sgoetz biomedical-nlp
	Obol: integrating language and meaning in bio-ontologies [My Copy] Comparative and Functional Genomics, Vol. 5, No. 6-7. (August 2004), 509. by Christopher J. Mungall posted to ontology by helliontroy on 2006-11-28 00:02:38 as along with 1 person and 1 group dullhunk biomedical-nlp
	TnT -- A Statistical Part-of-Speech Tagging [My Copy] pp. 1-17. by Thorsten Brants posted to pos by helliontroy on 2006-11-27 23:59:19 as along with 1 group biomedical-nlp
	Word sense disambiguation criteria: a systematic study [My Copy] Vol. 20 (2004) by Laurent Audibert posted to wsd by helliontroy on 2006-11-27 23:55:51 as along with 1 group biomedical-nlp
	Automatically generating gene summaries from biomedical literature. [My Copy] Pac Symp Biocomput (2006), pp. 40-51. by X. Ling, J. Jiang, X. He, Q. Mei, C. Zhai, B. Schatz posted to grif psb06 summary by helliontroy on 2006-11-27 23:52:33 as along with 1 group biomedical-nlp
	Large-scale testing of bibliome informatics using Pfam protein families. [My Copy] Pac Symp Biocomput (2006), pp. 76-87. by A. G. Maguitman, A. Rechtsteiner, K. Verspoor, C. E. Strauss, L. M. Rocha posted to entity-identification evaluation psb06 by helliontroy on 2006-11-27 23:50:21 as along with 1 group biomedical-nlp
	Measures of semantic similarity and relatedness in the biomedical domain [My Copy] Journal of Biomedical Informatics, Vol. In Press, Corrected Proof by Ted Pedersen, Serguei V. Pakhomov, Siddharth Patwardhan, Christopher G. Chute posted to no-tag by helliontroy on 2006-11-27 23:46:58 as along with 4 people and 3 groups ifalk briordan ejmeij RockHI biomedical-nlp ilps LanguageModeling
	A sentence sliding window approach to extract protein annotations from biomedical articles. [My Copy] BMC Bioinformatics, Vol. 6 Suppl 1 (2005) by M. Krallinger, M. Padron, A. Valencia posted to biocreative04 by helliontroy on 2006-11-27 23:33:32 as along with 1 person and 1 group yggdrasil biomedical-nlp
	A system for identifying named entities in biomedical text: how results from two evaluations reflect on both the system and the evaluations: Conference Papers [My Copy] Comp. Funct. Genomics, Vol. 6, No. 1-2. (2005), pp. 77-85. by Shipra Dingare, Malvina Nissim, Jenny Finkel, Christopher Manning, Claire Grover posted to biocreative04 by helliontroy on 2006-11-27 23:30:42 as along with 2 people and 1 group vlachmore alanrw biomedical-nlp
	Finding genomic ontology terms in text using evidence content. [My Copy] BMC Bioinformatics, Vol. 6 Suppl 1 (2005) by F. M. Couto, M. J. Silva, P. M. Coutinho posted to biocreative04 by helliontroy on 2006-11-27 23:28:59 as along with 4 people and 3 groups irenas oannes josepe yggdrasil dbk-lab biomedical-nlp Regulomics_UCHSC
	Extracting functional annotations of proteins based on hybrid text mining approaches [My Copy] (2005) by Jung-Hsien Chiang, Hsu-Chun Yu posted to biocreative04 by helliontroy on 2006-11-27 23:26:37 as along with 1 group biomedical-nlp
	An evaluation of GO annotation retrieval for BioCreAtIvE and GOA. [My Copy] BMC Bioinformatics, Vol. 6 Suppl 1 (2005) by E. B. Camon, D. G. Barrell, E. C. Dimmer, et al.V. Lee, M. Magrane, J. Maslen, D. Binns, R. Apweiler posted to biocreative04 by helliontroy on 2006-11-27 23:20:58 as along with 5 people and 2 groups sgoetz yas CitoJam adoms yggdrasil T_lab biomedical-nlp
	Evaluation of BioCreAtIvE assessment of task 2. [My Copy] BMC Bioinformatics, Vol. 6 Suppl 1 (2005) by C. Blaschke, E. A. Leon, M. Krallinger, A. Valencia posted to biocreative04 by helliontroy on 2006-11-27 23:19:41 as along with 4 people and 2 groups leechuck yas zlu yggdrasil T_lab biomedical-nlp
	The Dative/Ergative Connection [My Copy] by Miriam Butt posted to theory by helliontroy on 2006-11-27 19:24:00 as along with 1 group biomedical-nlp
	Extracting semantic predications from Medline citations for pharmacogenomics [My Copy] In Pacific Symposium on Biocomputing, No. 12. (2007), pp. 209-220. by Caroline Ahlers, Marcelo Fiszman, Dina Demner-Fushman, Francois-Michel Lang, Thomas Rindflesch posted to relation-extraction by helliontroy on 2006-11-22 17:52:25 as along with 1 person and 1 group josepe biomedical-nlp
	Annotating genes using textual patterns [My Copy] In Pacific Symposium on Biocomputing, No. 12. (2007), pp. 221-232. by Ali Cakmak, Gultekin Ozsoyoglu posted to abstract annotation go pattern by helliontroy on 2006-11-20 20:02:13 as along with 1 group biomedical-nlp
	Information extraction in molecular biology. [My Copy] Brief Bioinform, Vol. 3, No. 2. (June 2002), pp. 154-165. by C. Blaschke, L. Hirschman, A. Valencia posted to fulltext-discourse by helliontroy on 2006-11-17 18:20:24 as along with 4 people and 3 groups irenas Enro kuhn yas dbk-lab T_lab biomedical-nlp
	Text mining and ontologies in biomedicine: Making sense of raw text [My Copy] Brief Bioinform, Vol. 6, No. 3. (1 January 2005), pp. 239-251. by I. Spasic, S. Ananiadou, J. Mcnaught, A. Kumar posted to ontology review by helliontroy on 2006-11-10 23:01:08 as along with 17 people and 5 groups lmichan tsunol artaban421 daforerog liblab svozil arafalov henk-cul farzanehs lauras irenas andytseng yas hpiwowar johnkork daniel_schober yggdrasil Bioinformatics NLP dbk-lab T_lab biomedical-nlp
	Developing a protocol for bioinformatics analysis: An integrated information behavior and task analysis approach: Research Articles [My Copy] J. Am. Soc. Inf. Sci. Technol., Vol. 56, No. 5. (March 2005), pp. 469-482. by Gondy Leroy, Hsinchun Chen posted to chunker co-occurrence nominalization ontology preposition relation-extraction visualization by helliontroy on 2006-11-09 21:05:52 as along with 4 people and 2 groups kumppis arafalov irenas yggdrasil dbk-lab biomedical-nlp
	Robust relational parsing over biomedical literature: extracting inhibit relations. [My Copy] Pac Symp Biocomput (2002), pp. 362-373. by J. Pustejovsky, J. Castaño, J. Zhang, M. Kotecki, B. Cochran posted to no-tag by helliontroy on 2006-11-09 21:04:36 as along with 3 people and 3 groups henk-cul pault zlu dbmi-nlp NaCTeM biomedical-nlp
	Automated extraction of information on protein-protein interactions from the biological literature. [My Copy] Bioinformatics, Vol. 17, No. 2. (February 2001), pp. 155-161. by T. Ono, H. Hishigaki, A. Tanigami, T. Takagi posted to no-tag by helliontroy on 2006-11-09 21:03:30 as along with 9 people and 4 groups pault arafalov irenas yas blackbart zlu bundschu satre yggdrasil NaCTeM T_lab biomedical-nlp generif_paper

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biocreative04	15
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helliontroy's library 156 articles Export

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