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	The first step in the development of text mining technology for cancer risk assessment: identifying and organizing scientific evidence in risk assessment literature. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (22 September 2009), 303. by Anna Korhonen, Ilona Silins, Lin Sun, Ulla Stenius posted to user-needs text-mining clinical cancer application by henk-cul on 2009-10-01 15:59:28 as along with 1 person and 1 group nuin dbmi-nlp
	Automated Classification of Radiology Reports for Acute Lung Injury: Comparison of Keyword and Machine Learning Based Natural Language Processing Approaches [My Copy] In NLP Approaches for Unmet Information Needs in Health Care by Anonymous posted to x-ray-reports negex negation-detection n-grams maximum-entropy mallet machine-learning keywords clinical character-n-grams by henk-cul on 2009-08-29 19:20:18 as
	What can natural language processing do for clinical decision support? [My Copy] Journal of Biomedical Informatics, Vol. 42, No. 5. (12 October 2009), pp. 760-772. by Dina Demner-Fushman, Wendy W. Chapman, Clement J. McDonald posted to review nlp decision-support clinical by henk-cul on 2009-08-20 14:49:22 as along with 1 person and 1 group shashank_hi dbmi-nlp
	Text mining and natural language processing approaches for automatic categorization of lay requests to web-based expert forums. [My Copy] Journal of medical Internet research, Vol. 11, No. 3. (2009) by Wolfgang Himmel, Ulrich Reincke, Hans Wilhelm W. Michelmann posted to classification clinical medical nlp by henk-cul on 2009-07-30 15:58:39 as along with 1 person and 1 group yeminjiao dbmi-nlp
	Clinical text classification under the Open and Closed Topic Assumptions. [My Copy] International journal of data mining and bioinformatics, Vol. 3, No. 3. (2009), pp. 299-313. by Yutaka Sasaki, Brian Rea, Sophia Ananiadou posted to clinical closed-topic open-topic text-classification by henk-cul on 2009-07-30 15:57:23 as along with 1 group dbmi-nlp
	Clinical validation of the AHRQ postoperative venous thromboembolism patient safety indicator. [My Copy] Joint Commission journal on quality and patient safety / Joint Commission Resources, Vol. 35, No. 7. (July 2009), pp. 370-376. by Katherine E. Henderson, Angela Recktenwald, Richard M. Reichley, et al.Thomas C. Bailey, Brian M. Waterman, Rebecca L. Diekemper, Patricia E. Storey, Belinda K. Ireland, Wm Claiborne C. Dunagan posted to ahrq clinical icd-9 nlp patient-safety-indicator safety by henk-cul on 2009-07-30 15:55:57 as along with 1 group dbmi-nlp
	Survey of clinical knowledge management & analysis of unstructured text [My Copy] by William Lau posted to biomedical clinical overview by henk-cul on 2009-07-15 20:13:09 as along with 1 group dbmi-nlp
	CliniViewer: a tool for viewing electronic medical records based on natural language processing and XML. [My Copy] Studies in health technology and informatics, Vol. 107, No. Pt 1. (2004), pp. 639-643. by H. Liu, C. Friedman posted to clinical discharge-summaries emr nlp summarization xml by henk-cul on 2009-07-15 19:16:33 as along with 1 group dbmi-nlp
	The BioScope corpus: annotation for negation, uncertainty and their scope in biomedical texts [My Copy] In Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (June 2008), pp. 38-45. by György Szarvas, Veronika Vincze, Richárd Farkas, János Csirik posted to biomedical bioscope clinical hedging negation scope uncertainty by henk-cul on 2009-07-15 02:43:26 as along with 1 group dbmi-nlp
	Multi-modal presentation of medical histories [My Copy] In IUI '08: Proceedings of the 13th international conference on Intelligent user interfaces (2008), pp. 80-89. by Catalina Hallett posted to clinical images nlp summaries by henk-cul on 2009-07-08 22:54:27 as along with 3 people and 1 group Scis0000002 camargoj fryanpan dbmi-nlp
	Exploring the ability of natural language processing to extract data from nursing narratives. [My Copy] Computers, informatics, nursing : CIN, Vol. 27, No. 4. (g 2009) by S. Hyun, S. B. Johnson, S. Bakken posted to applications clinical medlee nlp nursing by henk-cul on 2009-07-08 15:04:54 as along with 1 group dbmi-nlp
	TEXT2TABLE: Medical Text Summarization System Based on Named Entity Recognition and Modality Identification [My Copy] In Proceedings of the BioNLP 2009 Workshop (June 2009), pp. 185-192. by Eiji Aramaki, Yasuhide Miura, Masatsugu Tonoike, Tomoko Ohkuma, Hiroshi Mashuichi, Kazuhiko Ohe posted to clinical contextual-features medical modality named-entity-recognition by henk-cul on 2009-06-18 16:54:26 as along with 1 group dbmi-nlp
	Towards Retrieving Relevant Information for Answering Clinical Comparison Questions [My Copy] In Proceedings of the BioNLP 2009 Workshop (June 2009), pp. 153-161. by Annette Leonhard posted to clinical question-answering by henk-cul on 2009-06-18 16:51:26 as along with 1 group dbmi-nlp
	Discerning Tumor Status from Unstructured MRI Reports-Completeness of Information in Existing Reports and Utility of Automated Natural Language Processing. [My Copy] Journal of digital imaging : the official journal of the Society for Computer Applications in Radiology (30 May 2009) by Lionel T. Cheng, Jiaping Zheng, Guergana K. Savova, Bradley J. Erickson posted to clinical nlp statistical svm tumor by henk-cul on 2009-06-03 14:39:43 as along with 1 group dbmi-nlp
	MediClass: A System for Detecting and Classifying Encounter-based Clinical Events in Any Electronic Medical Record [My Copy] Journal of the American Medical Informatics Association, Vol. 12, No. 5. (19 May 2005), pp. 517-529. by B. Hazlehurst posted to adverse-event-detection clinical contextual-features disease-surveillance mediclass negation quality-assessment by henk-cul on 2009-06-02 01:35:00 as along with 2 people and 1 group FemkeDeBackere anoop_kunchukuttan dbmi-nlp
	NLP-based identification of pneumonia cases from free-text radiological reports. [My Copy] AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium (2008), pp. 172-176. by Peter L. Elkin, David Froehling, Dietlind Wahner-Roedler, et al.Brett Trusko, Gail Welsh, Haobo Ma, Armen X. Asatryan, Jerome I. Tokars, S. Trent Rosenbloom, Steven H. Brown posted to clinical contextual-features nlp pneumonia radiology rules by henk-cul on 2009-05-22 02:12:42 as along with 1 group dbmi-nlp
	A Comparison of Graphical and Textual Presentations of Time Series Data to Support Medical Decision Making in the Neonatal Intensive Care Unit [My Copy] The Journal of Clinical Monitoring and Computing, Vol. 19, No. 3. (June 2005), pp. 183-194. by Anna Law, Yvonne Freer, Jim Hunter, Robert Logie, Neil Mcintosh, John Quinn posted to clinical decision-making neonatal summaries by henk-cul on 2009-05-14 23:09:38 as along with 1 group dbmi-nlp
	Bayesian networks for knowledge discovery in large datasets: basics for nurse researchers [My Copy] Journal of Biomedical Informatics, Vol. 36, No. 4-5. (October 2003), pp. 389-399. by S. Lee, P. A. Abbott posted to applications bayes-rule bayesian bayesian-network clinical conditional-independence conditional-probability d-separation expectation-maximization independence-assumptions inferencing joint-probability kdd knowledge-discovery prior-probability probability-theory review roc-curve sensitivity specificity by henk-cul on 2009-05-09 00:10:49 as along with 1 group dbmi-nlp
	Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition [My Copy] In LREC (2008) by Philip Ogren, Guergana Savova, Christopher Chute posted to annotation clinical named-entities snomed-ct by henk-cul on 2009-05-01 14:57:33 as along with 1 group dbmi-nlp
	KnowledgeLink: Impact of context sensitive information retrieval on clinicians' information needs. [My Copy] J Am Med Inform Assoc (12 October 2005) by Saverio M M. Maviglia, Catherine S S. Yoon, David W W. Bates, Gilad Kuperman posted to clinical info-button information need by henk-cul on 2009-04-28 14:59:29 as along with 1 group dbmi-nlp
	Combining Hidden Markov Models and Latent Semantic Analysis for Topic Segmentation and Labeling: Method and Clinical Application [My Copy] In SMBM'08 (2008) by Filip Ginter, Hanna Suominen, Sampo Pyysalo, Tapio Salakoski posted to clinical hmm topic-segmentation by henk-cul on 2009-04-24 15:00:30 as along with 1 group dbmi-nlp
	Towards Resource-Efficient Construction of a Full Parser for Finnish Nursing Narratives [My Copy] In Proceedings of the First Conference on Text and Data Mining of Clinical Documents (Louhi'08) (2008) by Veronika Laippala, Filip Ginter, Sampo Pyysalo, Tapio Salakoski posted to clinical parsing by henk-cul on 2009-04-24 14:57:31 as along with 1 group dbmi-nlp
	Automated Text Segmentation and Topic Labeling of Clinical Narratives [My Copy] In Proceedings of the First Conference on Text and Data Mining of Clinical Documents (Louhi'08) (2008) by Hanna Suominen, Sampo Pyysalo, Filip Ginter, Tapio Salakoski posted to clinical hmm nursing-notes section segmentation text-segmentation topic-labeling by henk-cul on 2009-04-24 14:54:36 as along with 1 group dbmi-nlp
	TN-TIES: A system for extracting temporal information from emergency department triage notes. [My Copy] AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium (2008), pp. 328-332. by A. K. Irvine, S. W. Haas, T. Sullivan posted to chunking classifier clinical decision-trees ed-notes naive-bayes temporal-modeling triage-notes by henk-cul on 2009-04-24 02:09:17 as along with 1 group dbmi-nlp
	Distinguishing Historical from Current Problems in Clinical Reports – Which Textual Features Help [My Copy] In BioNLP 2009 Conference (2009) by D. Mowery, H. Harkema, J. Dowling, Lustgarten posted to clinical contextual-features feature-evaluation machine-learning temporal-modeling by henk-cul on 2009-04-23 17:28:53 as
	A Frequency-based Technique to Improve the Spelling Suggestion Rank in Medical Queries [My Copy] J Am Med Inform Assoc, Vol. 11, No. 3. (1 May 2004), pp. 179-185. by Jonathan Crowell, Qing Zeng, Long Ngo, Eve-Marie Lacroix posted to clinical information-retrieval question-answering by henk-cul on 2009-04-22 20:17:57 as along with 1 group dbmi-nlp
	Knowledge-based methods to help clinicians find answers in MEDLINE. [My Copy] Journal of the American Medical Informatics Association : JAMIA, Vol. 14, No. 6. (1 November 2007), pp. 772-780. by Charles A. Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Nicholas C. Ide, Thomas C. Rindflesch posted to clinical information-retrieval question-answering by henk-cul on 2009-04-22 20:17:20 as along with 5 people and 1 group guhjy ejmeij msampson Gaetan Jakob dbmi-nlp
	Ad Hoc Classification of Radiology Reports [My Copy] J Am Med Inform Assoc, Vol. 6, No. 5. (1 September 1999), pp. 393-411. by David B. Aronow, Feng Fangfang, Bruce W. Croft posted to clinical coding contextual-features negation by henk-cul on 2009-04-14 16:14:16 as along with 1 group dbmi-nlp
	Use of general-purpose negation detection to augment concept indexing of medical documents: a quantitative study using the UMLS. [My Copy] J Am Med Inform Assoc, Vol. 8, No. 6. (c 2001), pp. 598-609. by P. G. Mutalik, A. Deshpande, P. M. Nadkarni posted to clinical contextual-features negation parsing by henk-cul on 2009-04-14 15:58:24 as along with 2 people and 1 group lariverosc fordparsons dbmi-nlp
	A controlled trial of automated classification of negation from clinical notes. [My Copy] BMC medical informatics and decision making, Vol. 5 (2005) by P. L. Elkin, S. H. Brown, B. A. Bauer, et al.C. S. Husser, W. Carruth, L. R. Bergstrom, D. L. Wahner-Roedler posted to clinical contextual-features negation by henk-cul on 2009-04-14 15:39:15 as
	Concept negation in free text components of vaccine safety reports. [My Copy] AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium (2006) by H. Tolentino, M. Matters, W. Walop, et al.B. Law, W. Tong, F. Liu, P. Fontelo, K. Kohl, D. Payne posted to clinical contextual-features negation by henk-cul on 2009-04-14 15:33:47 as along with 1 group dbmi-nlp
	Automatic section segmentation of medical reports. [My Copy] AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium (2003), pp. 155-159. by P. S. Cho, R. K. Taira, H. Kangarloo posted to clinical section segmentation by henk-cul on 2009-04-14 15:10:59 as along with 1 group dbmi-nlp
	Using a Java Dynamic Tree to manage the terminology in a suite of medical applications. [My Copy] Methods of information in medicine, Vol. 47, No. 6. (2008), pp. 499-504. by K. Yang, M. W. Evens, D. A. Trace posted to clinical terminology by henk-cul on 2009-04-14 14:57:17 as along with 1 group dbmi-nlp
	The New Frontier - Analysing Clinical Notes for Translation Research - Back to the Future [My Copy] In Information Retrieval in Biomedicine: Natural Language Processing for Knowledge Integration (2008) by Jon Patrick, Pooyan Asgari edited by Violaine Prince, Mathieu Roche posted to clinical coding review by henk-cul on 2009-04-13 22:35:46 as
	A novel hybrid approach to automated negation detection in clinical radiology reports. [My Copy] Journal of the American Medical Informatics Association : JAMIA, Vol. 14, No. 3. (n 2007), pp. 304-311. by Yang Huang, Henry J. Lowe posted to clinical contextual-features by henk-cul on 2009-04-13 17:47:59 as along with 2 people and 2 groups kkaiser farzanehs dbmi-nlp IEG
	Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system [My Copy] BMC Medical Informatics and Decision Making, Vol. 6 (26 July 2006), 30. by Qing T. Zeng, Sergey Goryachev, Scott Weiss, Margarita Sordo, Shawn N. Murphy, Ross Lazarus posted to application chunks clinical encoding pos-tagging tools umls by henk-cul on 2009-04-10 19:27:13 as along with 1 group dbmi-nlp
	Assessment of disease named entity recognition on a corpus of annotated sentences. [My Copy] BMC bioinformatics, Vol. 9 Suppl 3, No. Suppl 3. (2008), S3. by Antonio Jimeno, Ernesto Jimenez-Ruiz, Vivian Lee, Sylvain Gaudan, Rafael Berlanga, Dietrich Rebholz-Schuhmann posted to biomedical clinical metamap named-entities by henk-cul on 2009-04-10 15:36:41 as along with 6 people and 3 groups balajis cdepablo eesruiz Effie guhjy dullhunk ImagCom - Biomedical Text Computing dbmi-nlp NaCTeM
	A natural language parsing system for encoding admitting diagnoses. [My Copy] Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium (1997), pp. 814-818. by P. J. Haug, L. Christensen, M. Gundersen, B. Clemons, S. Koehler, K. Bauer posted to clinical coding parsing by henk-cul on 2009-03-30 15:32:44 as
	Developing Feature Types for Classifying Clinical Notes [My Copy] In Biological, translational, and clinical language processing (June 2007), pp. 191-192. by Jon Patrick, Yitao Zhang, Yefeng Wang posted to clinical coding text-classification by henk-cul on 2009-03-23 21:03:22 as along with 1 group dbmi-nlp
	Information Extraction from Patients' Free Form Documentation [My Copy] In Biological, translational, and clinical language processing (June 2007), pp. 181-182. by Agnieszka Mykowiecka, Malgorzata Marciniak posted to clinical information-extraction by henk-cul on 2009-03-23 21:02:08 as along with 1 group dbmi-nlp
	A Study of Structured Clinical Abstracts and the Semantic Classification of Sentences [My Copy] In Biological, translational, and clinical language processing (June 2007), pp. 121-128. by Grace Chung, Enrico Coiera posted to classification clinical by henk-cul on 2009-03-23 21:01:19 as along with 1 group dbmi-nlp
	Determining the Syntactic Structure of Medical Terms in Clinical Notes [My Copy] In Biological, translational, and clinical language processing (June 2007), pp. 9-16. by Bridget Mcinnes, Ted Pedersen, Serguei Pakhomov posted to clinical terminology by henk-cul on 2009-03-23 20:58:59 as along with 1 group dbmi-nlp
	Extracting Clinical Relationships from Patient Narratives [My Copy] In Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (June 2008), pp. 10-18. by Angus Roberts, Robert Gaizauskas, Mark Hepple posted to clinical information-extraction by henk-cul on 2009-03-23 20:57:54 as along with 1 group dbmi-nlp
	Conditional Random Fields and Support Vector Machines for Disorder Named Entity Recognition in Clinical Texts [My Copy] In Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (June 2008), pp. 94-95. by Dingcheng Li, Guergana Savova, Karin K. Schuler posted to clinical named-entities by henk-cul on 2009-03-23 20:56:37 as along with 1 group dbmi-nlp
	Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence [My Copy] J Am Med Inform Assoc, Vol. 16, No. 1. (1 January 2009), pp. 25-31. by Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch, Nancy L. Wilczynski, Brian R. Haynes posted to application clinical by henk-cul on 2009-03-23 19:53:41 as along with 3 people and 1 group waghsk msampson kharke dbmi-nlp
	Improving language models for radiology speech recognition [My Copy] Journal of Biomedical Informatics, Vol. 42, No. 1. (February 2009), pp. 53-58. by John M. Paulett, Curtis P. Langlotz posted to clinical radiology speech-recognition by henk-cul on 2009-03-23 19:15:19 as along with 1 person and 1 group lgalescu dbmi-nlp
	Text mining in healthcare. Applications and opportunities. [My Copy] Journal of healthcare information management : JHIM, Vol. 22, No. 3. (2008), pp. 52-56. by U. Raja, T. Mitchell, T. Day, J. M. Hardin posted to adverse-drug clinical clustering co-occurrence event-detection predictive-modeling review text-mining by henk-cul on 2009-03-23 14:41:28 as along with 2 people and 2 groups Effie liblab NaCTeM dbmi-nlp
	Active Computerized Pharmacovigilance using Natural Language Processing, Statistics, and Electronic Health Records: a Feasibility Study. [My Copy] Journal of the American Medical Informatics Association : JAMIA (4 March 2009) by Xiaoyan Wang, George Hripcsak, Marianthi Markatou, Carol Friedman posted to application clinical by henk-cul on 2009-03-13 15:57:30 as along with 1 group dbmi-nlp
	Tracking Medical Students' Clinical Experiences using Natural Language Processing. [My Copy] Journal of biomedical informatics (20 February 2009) by Joshua C C. Denny, Lisa Bastarache, Elizabeth Ann A. Sastre, Anderson Spickard posted to application clinical problem-list by henk-cul on 2009-02-27 14:54:25 as along with 1 group dbmi-nlp
	Mplus: a probabilistic medical language understanding system [My Copy] (2002) by L. Christensen, P. Haug, M. Fiszman posted to bayesian clinical semantics by henk-cul on 2009-02-26 16:55:49 as along with 1 person and 1 group lmi_swap dbmi-nlp

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contextual-features	25
co-occurrence	22
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feature-evaluation	3
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pattern-learning	3
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definitions	3
knowledge-discovery	3
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prepositions	3
section	3
mechanical-turk	3
overuse	2
genes	2
knowledge-base	2
speculation	2
uima	2
quality-indicators	2
biomedical-informatics	2
negation-detection	2
ed-notes	2
opennlp	2
disease-outbreak-reports	2
chunking	2
rules	2
discourse-parsing	2
event-extraction	2
mutual-information	2
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uncertainty	2
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decision-support	2
conditional-independence	1
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term-weighting	1
event-detection	1
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literature-navigation	1
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memm	1
conditional-probability	1
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neonatal	1
relational-parsing	1
phrase-window	1
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correlations	1
smoking-cessation	1
minipar	1
extrinsic-evaluation	1
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medical-research	1
decision-making	1
bionlp-2009	1
lexical	1
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rasp	1
comorbidities	1
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google	1
comparison	1
healthcare	1
claims	1
bayes	1
syndromic-surveillance	1
excom	1
decision-trees	1
experiencer	1
vector-space-model	1
machine-translation	1
grammatical-relations	1
error-correcting-output-codes	1
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foot-examinations	1
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wordnet	1
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systr	1
tumor	1
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limitations	1
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clinical-computing	1
enju-parser	1
swiss-prot	1
dengue	1
compounds	1
nursing-notes	1
speech-acts	1
ahrq	1
antonymy	1
search	1
ambiguity	1
human-judgments	1
independence-assumptions	1
electronic-medical-record	1
information-gain	1
t-test	1
bioscope-corpus	1
escience	1
passive	1
logistic-regression	1
data-processing-inequality	1
reference-standard	1
disease-surveillance	1
event-coreference	1
svm-light	1
semantic-web	1
bayesian-flip	1
case-notes	1
pre-evaluation	1
proprietary-systems	1
dictionary-lookup	1
feature-representation	1
open-source	1
manuscript-mark-up	1
nursing	1
feature-engineering	1
health-information-technology	1
stanford-dependency-parser	1
protein-protein-interaction	1
interactive-pdf	1
observations	1
biology	1
medscan	1
fmri	1
patient-safety-indicator	1
bind	1
terms	1
wikipedia	1
child-language	1
x-ray-reports	1
frequencies	1
pathways	1
propbank	1
american-recovery-reinvestment-act	1
knowledge	1
xerox	1
tool	1
journals	1
natural-language-generation	1
career-development	1
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