higueruelo's 2007 [144 articles] Export

Recent papers added to higueruelo's library classified by the tag 2007. You can also see everyone's 2007.

	Energetics of Protein Folding [My Copy] Journal of Molecular Biology, Vol. 371, No. 2. (10 August 2007), pp. 283-301. by Robert L. Baldwin posted to 2007 buried-surface folding scissors thermo by higueruelo on 2009-06-08 16:50:44 as along with 6 people melo_mcr flbarroso mijam yarikson choonpeng cat_worth
	PROTCOM: searchable database of protein complexes enhanced with domain-domain structures. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by Petras J. Kundrotas, Emil Alexov posted to 2007 db ppi by higueruelo on 2009-03-13 14:58:23 as along with 3 people carlk bicko chad_davis
	SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by Emily R. Jefferson, Thomas P. Walsh, Timothy J. Roberts, Geoffrey J. Barton posted to 2007 db ppi by higueruelo on 2009-03-13 14:54:26 as along with 1 person bicko
	A structural bioinformatics approach to the analysis of nonsynonymous single nucleotide polymorphisms (nsSNPs) and their relation to disease. [My Copy] Journal of bioinformatics and computational biology, Vol. 5, No. 6. (December 2007), pp. 1297-1318. by C. L. Worth, G. R. Bickerton, A. Schreyer, et al.J. R. Forman, T. M. Cheng, S. Lee, S. Gong, D. F. Burke, T. L. Blundell posted to 2007 db snps by higueruelo on 2009-01-19 14:34:00 as along with 2 people semin bicko
	Understanding antibody-antigen associations by molecular dynamics simulations: detection of important intra- and inter-molecular salt bridges. [My Copy] Cell biochemistry and biophysics, Vol. 47, No. 3. (2007), pp. 361-375. by N. Sinha, Y. Li, C. A. Lipschultz, S. J. Smith-Gill posted to 2007 ab dynamics by higueruelo on 2009-01-19 12:23:32 as
	The influence of drug-like concepts on decision-making in medicinal chemistry [My Copy] Nature Reviews Drug Discovery, Vol. 6, No. 11., pp. 881-890. by Paul D. Leeson, Brian Springthorpe posted to 2007 druggable props by higueruelo on 2008-09-25 11:36:32 as along with 2 people pslee nicklynch
	Diverse, High-Quality Test Set for the Validation of Protein−Ligand Docking Performance [My Copy] Journal of Medicinal Chemistry, Vol. 50, No. 4. (1 February 2007), pp. 726-741. by Michael J. Hartshorn, Marcel L. Verdonk, Gianni Chessari, et al.Suzanne C. Brewerton, Wijnand T. M. Mooij, Paul N. Mortenson, Christopher W. Murray posted to 2007 docking druggable sm-prot by higueruelo on 2008-09-15 09:39:31 as along with 9 people flbarroso GermanErlenkamp massivemayhem BragilMassoud daevans ramensky hmk superpyrin thanatos
	Prediction of intrinsic disorder and its use in functional proteomics. [My Copy] Methods Mol Biol, Vol. 408 (2007), pp. 69-92. by V. N. Uversky, P. Radivojac, L. M. Iakoucheva, Z. Obradovic, A. K. Dunker posted to 2007 disorder by higueruelo on 2008-09-12 15:24:35 as
	NMR structural studies of interactions of a small, nonpeptidyl Tpo mimic with the thrombopoietin receptor extracellular juxtamembrane and transmembrane domains. [My Copy] The Journal of biological chemistry, Vol. 282, No. 19. (11 May 2007), pp. 14253-14261. by M. J. Kim, S. H. Park, S. J. Opella, et al.T. H. Marsilje, P. Y. Michellys, H. M. Seidel, S. S. Tian posted to 2007 nmr ppi sm struct-determination tpo xf by higueruelo on 2008-09-12 14:10:35 as
	Biologic aspects of thrombopoietin and the development of novel thrombopoietic agents for clinical use. [My Copy] Current drug discovery technologies, Vol. 4, No. 3. (October 2007), pp. 162-173. by M. L. Evangelista, S. Amadori, R. Stasi posted to 2007 ppi review sm tpo xf by higueruelo on 2008-09-12 14:00:07 as
	Towards erythropoietin mimicking small molecules. [My Copy] Bioorganic & medicinal chemistry letters, Vol. 17, No. 2. (15 January 2007), pp. 379-384. by A. Dömling, B. Beck, W. Baumbach, G. Larbig posted to 2007 epo ppi sm xf by higueruelo on 2008-09-12 11:21:30 as
	Comprehensive statistical analysis of residues interaction specificity at protein-protein interfaces. [My Copy] Proteins, Vol. 67, No. 4. (1 June 2007), pp. 1060-1077. by A. Anashkina, E. Kuznetsov, N. Esipova, V. Tumanyan posted to 2007 interface ppi by higueruelo on 2008-09-10 16:51:44 as along with 2 people bicko choonpeng
	A5, a New Small-Molecule Inhibitor of CD4 D1 Obtained from a Computer-Aided Screening Method, Contributes to the Inhibition of CD4+ T-cell Function [My Copy] J Biomol Screen, Vol. 12, No. 6. (1 September 2007), pp. 800-808. by He Xiao, Jian-Nan Feng, Zu-Yin Yu, et al.Lei Zhang, Ming Yu, Xin-Hua He, Song Li, Bei-Fen Shen, Yan Li posted to 2007 cd4 ppi sm xf by higueruelo on 2008-07-18 11:26:30 as
	Protein-protein recognition and interaction hot spots in an antigen-antibody complex: free energy decomposition identifies "efficient amino acids". [My Copy] Proteins, Vol. 67, No. 2. (1 May 2007), pp. 418-434. by Virginie Lafont, Michael Schaefer, Roland H. Stote, Danièle Altschuh, Annick Dejaegere posted to 2007 ab hotspots le ppi thermo by higueruelo on 2008-07-18 11:22:41 as along with 2 people flbarroso jteyra
	Kinase packing defects as drug targets. [My Copy] Drug discovery today, Vol. 12, No. 21-22. (November 2007), pp. 917-923. by A. Crespo, A. Fernández posted to 2007 dehydrons kinases sm by higueruelo on 2008-07-17 11:52:03 as
	Protein flexibility and species specificity in structure-based drug discovery: dihydrofolate reductase as a test system. [My Copy] Journal of the American Chemical Society, Vol. 129, No. 12. (28 March 2007), pp. 3634-3640. by A. L. Bowman, M. G. Lerner, H. A. Carlson posted to 2007 dhfr flexibility by higueruelo on 2008-07-07 11:54:33 as
	Exploring Experimental Sources of Multiple Protein Conformations in Structure-Based Drug Design [My Copy] Journal of the American Chemical Society, Vol. 129, No. 26. (1 July 2007), pp. 8225-8235. by Kelly L. Damm, Heather A. Carlson posted to 2007 flexibility hiv1 nmr by higueruelo on 2008-07-07 11:44:18 as along with 1 person ubcg08l
	Pepitope: epitope mapping from affinity-selected peptides [My Copy] Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3244-3246. by Itay Mayrose, Osnat Penn, Elana Erez, et al.Nimrod D. Rubinstein, Tomer Shlomi, Natalia T. Freund, Erez M. Bublil, Eytan Ruppin, Roded Sharan, Jonathan M. Gershoni, Eric Martz, Tal Pupko posted to 2007 ab pepitope peptides ppi by higueruelo on 2008-07-01 10:47:21 as
	How Different are Structurally Flexible and Rigid Binding Sites? Sequence and Structural Features Discriminating Proteins that Do and Do not Undergo Conformational Change upon Ligand Binding. [My Copy] J Mol Biol (29 September 2006) by Kannan Gunasekaran, Ruth Nussinov posted to 2007 flexibility sm-prot by higueruelo on 2008-04-21 11:27:32 as along with 10 people and 1 group aqeel reyez BragilMassoud dgruiz radestock lna yongzhao choonpeng weisblum nickolay TSRI_MGL
	Design and Development of Small Molecules for Specific Targeted Therapy of Diffuse Large B-Cell Lymphoma. [My Copy] ASH Annual Meeting Abstracts, Vol. 110, No. 11. (16 November 2007), 799. by Gustavo F. Da Silva, Alex Ghetu, Leandro Cerchietti, et al.Jose M. Polo, Andrew Coop, Alexander Mackerell, Gilbert G. Prive, Ari Melnick posted to 2007 bcl6 ppi sm xf by higueruelo on 2008-04-01 15:39:05 as
	Development of Allosteric Inhibitors of the Interaction of AML1 and CBF for the Treatment of Leukemia. [My Copy] ASH Annual Meeting Abstracts, Vol. 110, No. 11. (16 November 2007), 653. by Michael G. Douvas, L. Roudaiya, J. Grembecka, N. Speck, J. H. Bushweller posted to 2007 allosteric cbf ppi sm xf by higueruelo on 2008-04-01 15:36:05 as
	Development of Small Molecule Inhibitors of the AML1-ETO and CBF -SMMHC Oncoproteins. [My Copy] ASH Annual Meeting Abstracts, Vol. 110, No. 11. (16 November 2007), 1591. by Jolanta E. Grembecka, Kristin Graf, Yali Kong, et al.Michael Douvas, Tomasz Cierpicki, Anuradha Illendula, Gwen Baber, Izabela Bielnicka, Liya Roudaia, Nancy A. Speck, Milton L. Brown, John H. Bushweller posted to 2007 allosteric cbf ppi sm xf by higueruelo on 2008-04-01 15:33:14 as
	Surface Plasmon Resonance Study of Apoptotic Regulators Bcl-2, Bcl-w, Bcl-XL, and Mcl-1 Indicate That the Preclinical Small Molecule Inhibitor (SMI) TW-37 Binds to the Hydrophobic Groove Competitively with tBid To Form a Heterodimer Which Cannot Be Disrupted by 200-Fold Molar Excess of TW-37. [My Copy] ASH Annual Meeting Abstracts, Vol. 110, No. 11. (16 November 2007), 1606. by Anton-Scott Goustin, Anshu Giri, Shaomeng Wang, Ayad Al-Katib, Mohammad M. Ramzi posted to 2007 bcl2 bclxl ppi sm by higueruelo on 2008-04-01 15:30:37 as
	Spatial chemical conservation of hot spot interactions in protein-protein complexes [My Copy] BMC Biology, Vol. 5 (09 October 2007), 43. by Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson posted to 2007 hotspots interface ppi xf by higueruelo on 2008-03-26 10:36:04 as along with 3 people bicko IrinaMoreira marti
	Overcoming the Inadequacies or Limitations of Experimental Structures as Drug Targets by Using Computational Modeling Tools and Molecular Dynamics Simulations [My Copy] ChemMedChem, Vol. 2, No. 10. (2007), pp. 1388-1401. by Esther Marco, Federico Gago posted to 2007 dynamics flexibility nma review xf by higueruelo on 2008-03-25 15:02:25 as along with 1 person dimka
	Coupling of antibodies with biotin. [My Copy] Methods Mol Biol, Vol. 418 (2007), pp. 13-24. by R. P. Haugland, W. W. You posted to 2007 ab biotin by higueruelo on 2008-02-26 09:52:07 as
	Similar binding sites and different partners: implications to shared proteins in cellular pathways. [My Copy] Structure, Vol. 15, No. 3. (March 2007), pp. 341-354. by O. Keskin, R. Nussinov posted to 2007 interface ppi xf by higueruelo on 2008-02-25 12:59:14 as along with 3 people bicko choonpeng marti
	A new paradigm for protein kinase inhibition: blocking phosphorylation without directly targeting ATP binding. [My Copy] Drug discovery today, Vol. 12, No. 15-16. (August 2007), pp. 622-633. by M. A. Bogoyevitch, D. P. Fairlie posted to 2007 allosteric kinases by higueruelo on 2008-02-22 17:32:53 as along with 4 people tbinbal xtizon bicko zimbo1
	Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation [My Copy] Current Opinion in Structural Biology In Catalysis and regulation / Proteins, Vol. 17, No. 6. (December 2007), pp. 633-640. by Ivet Bahar, Chakra Chennubhotla, Dror Tobi posted to 2007 allosteric flexibility by higueruelo on 2008-02-21 17:16:03 as along with 10 people and 4 groups allmensch jrperillaj barry aqeel ruvido cactus sobolevnrm jennifermbui LamBras jmccammon structural_bioinformatics Bioinformatics baker-group McCammon
	RapperTK : a versatile engine for discrete restraint-based conformational sampling of macromolecules [My Copy] BMC Structural Biology, Vol. 7 (21 March 2007), 13. by Swanand P. Gore, Anjum M. Karmali, Tom L. Blundell posted to 2007 flexibility rapper by higueruelo on 2008-02-20 19:53:18 as
	Functional Anthology of Intrinsic Disorder. 1. Biological Processes and Functions of Proteins with Long Disordered Regions [My Copy] Journal of Proteome Research, Vol. 6, No. 5. (1 May 2007), pp. 1882-1898. by Hongbo Xie, Slobodan Vucetic, Lilia M. Iakoucheva, et al.Christopher J. Oldfield, A. Keith Dunker, Vladimir N. Uversky, Zoran Obradovic posted to 2007 disorder by higueruelo on 2008-02-20 18:34:20 as along with 2 people carlosjavierna biomcgary
	Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions. [My Copy] J Proteome Res, Vol. 6, No. 5. (May 2007), pp. 1899-1916. by S. Vucetic, H. Xie, L. M. Iakoucheva, et al.C. J. Oldfield, A. K. Dunker, Z. Obradovic, V. N. Uversky posted to 2007 disorder by higueruelo on 2008-02-20 18:33:49 as
	Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins. [My Copy] J Proteome Res, Vol. 6, No. 5. (May 2007), pp. 1917-1932. by H. Xie, S. Vucetic, L. M. Iakoucheva, et al.C. J. Oldfield, A. K. Dunker, Z. Obradovic, V. N. Uversky posted to 2007 disorder by higueruelo on 2008-02-20 18:33:18 as
	Characterization of molecular recognition features, MoRFs, and their binding partners. [My Copy] J Proteome Res, Vol. 6, No. 6. (June 2007), pp. 2351-2366. by V. Vacic, C. J. Oldfield, A. Mohan, et al.P. Radivojac, M. S. Cortese, V. N. Uversky, A. K. Dunker posted to 2007 disorder flexibility morfs xf by higueruelo on 2008-02-11 16:34:42 as
	DisProt: the Database of Disordered Proteins. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by M. Sickmeier, J. A. Hamilton, T. LeGall, et al.V. Vacic, M. S. Cortese, A. Tantos, B. Szabo, P. Tompa, J. Chen, V. N. Uversky, Z. Obradovic, A. K. Dunker posted to 2007 db disorder flexibility by higueruelo on 2008-02-11 16:31:55 as along with 4 people carlosjavierna chad_davis choonpeng allmensch
	Phage display for engineering and analyzing protein interaction interfaces [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Sachdev S. Sidhu, Shohei Koide posted to 2007 method phage ppi by higueruelo on 2008-02-11 16:26:14 as along with 2 people GeeSharpMinor carlescorbi
	Interaction geometry involving planar groups in protein-protein interfaces [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 1. (2007), pp. 84-97. by Rudra P. Saha, Rajasri Bhattacharyya, Pinak Chakrabarti posted to 2007 interface ppi by higueruelo on 2008-02-11 13:35:24 as along with 2 people bicko choonpeng
	Interaction-site prediction for protein complexes: a critical assessment [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2203-2209. by Huan-Xiang Zhou, Sanbo Qin posted to 2007 interface ppdocking ppi review xf by higueruelo on 2008-02-06 20:06:55 as along with 14 people dfdong jinghu_fandm flbarroso timg phoenixzxl tjimenez bicko malcook zwang cabbagezs niallhaslam carlescorbi marti kintoki
	Computational approach to site-directed ligand discovery. [My Copy] Proteins, Vol. 68, No. 2. (19 April 2007), pp. 551-560. by Gergely Tóth, Kiran Mukhyala, James A A. Wells posted to 2007 flexibility sunesis tethering by higueruelo on 2008-02-03 15:47:09 as along with 4 people bicko cjeans viktor21614 chgjb
	Protein-protein docking: overview and performance analysis. [My Copy] Methods Mol Biol, Vol. 413 (2007), pp. 283-314. by K. Wiehe, M. W. Peterson, B. Pierce, J. Mintseris, Z. Weng posted to 2007 ppdocking review by higueruelo on 2008-02-03 11:46:17 as
	Computational analyses of the surface properties of protein--protein interfaces [My Copy] Acta Crystallographica Section D, Vol. 63, No. 1. (Jan 2007), pp. 50-57. by Jan Gruber, Alexander Zawaira, Rhodri Saunders, C. Paul Barrett, Martin E. M. Noble posted to 2007 interface ppi by higueruelo on 2008-02-03 11:43:13 as along with 3 people jinghu_fandm flbarroso bicko
	A robustness-based approach to systems-oriented drug design [My Copy] Nat Rev Drug Discov, Vol. 6, No. 3. (23 March 2007), pp. 202-210. by Hiroaki Kitano posted to 2007 systemsbio by higueruelo on 2008-02-03 11:41:58 as along with 4 people abhishek_tiwari superpyrin bicko massivemayhem
	Small-Angle X-Ray Scattering from RNA, Proteins, and Protein Complexes [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 36, No. 1. (2007), pp. 307-327. by Jan Lipfert, Sebastian Doniach posted to 2007 ppi review saxs struct-determination by higueruelo on 2008-02-03 11:31:21 as along with 2 people pfluffernuugen dgront
	Structural characterization of flexible proteins using small-angle X-ray scattering. [My Copy] J Am Chem Soc, Vol. 129, No. 17. (2 May 2007), pp. 5656-5664. by P. Bernadó, E. Mylonas, M. V. Petoukhov, M. Blackledge, D. I. Svergun posted to 2007 flexibility saxs struct-determination by higueruelo on 2008-02-03 11:30:23 as along with 1 person choonpeng
	Structural analysis of flexible proteins in solution by small angle X-ray scattering combined with crystallography. [My Copy] J Struct Biol, Vol. 158, No. 2. (May 2007), pp. 214-223. by S. E. Tsutakawa, G. L. Hura, K. A. Frankel, P. K. Cooper, J. A. Tainer posted to 2007 flexibility saxs struct-determination by higueruelo on 2008-02-03 11:28:38 as
	Determining the architectures of macromolecular assemblies [My Copy] Nature, Vol. 450, No. 7170. (29 November 2007), pp. 683-694. by Frank Alber, Svetlana Dokudovskaya, Liesbeth M. Veenhoff, et al.Wenzhu Zhang, Julia Kipper, Damien Devos, Adisetyantari Suprapto, Orit Karni-Schmidt, Rosemary Williams, Brian T. Chait, Michael P. Rout, Andrej Sali posted to 2007 ppi struct-determination by higueruelo on 2008-02-03 11:18:17 as along with 9 people mijam bicko chad_davis neils cjeans zwang CameronNeylon faion phoenixzxl
	Protein-protein interaction hotspots carved into sequences. [My Copy] PLoS computational biology, Vol. 3, No. 7. (13 July 2007) by Yanay Ofran, Burkhard Rost posted to 2007 hotspots ppi review by higueruelo on 2008-02-03 11:08:49 as along with 9 people and 2 groups superpyrin qluo bicko dchughes grahamc cjeans zwang Jporci Pao-Yang G4ID Genetics-of-Gambling
	Towards drugs targeting multiple proteins in a systems biology approach. [My Copy] Curr Top Med Chem, Vol. 7, No. 10. (2007), pp. 943-951. by O. Keskin, A. Gursoy, B. Ma, R. Nussinov posted to 2007 druggable systemsbio by higueruelo on 2008-02-03 11:06:12 as along with 1 person bicko
	Protein-Protein Interfaces: Properties, Preferences, and Projections [My Copy] J. Proteome Res., Vol. 6, No. 7. (6 July 2007), pp. 2576-2586. by J. J. Headd, Y. E. A. Ban, P. Brown, H. Edelsbrunner, M. Vaidya, J. Rudolph posted to 2007 interface ppi by higueruelo on 2008-02-03 11:02:40 as along with 1 person mmuecke
	Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners [My Copy] PLoS Comput Biol, Vol. 3, No. 4. (27 April 2007), e43. by Benjamin A. Shoemaker, Anna R. Panchenko posted to 2007 ppdocking ppi review xf by higueruelo on 2008-02-03 10:58:05 as along with 25 people aceol colmryan timg cerca jperkins chica kiekyon kshameer zdai Robinder giovenko Yanno guhjy aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes groepl carlk Evangelia phoenixzxl

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ppi	438
xf	262
sm	241
review	165
2008	164
2007	144
2009	142
flexibility	84
interface	78
2005	58
2006	57
peptidomimetics	51
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p53	26
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