higueruelo's 2008 [164 articles] Export

Recent papers added to higueruelo's library classified by the tag 2008. You can also see everyone's 2008.

	SCOWLP classification: Structural comparison and analysis of protein binding regions [My Copy] BMC Bioinformatics, Vol. 9 (08 January 2008), 9. by Joan Teyra, Maciej Paszkowski-Rogacz, Gerd Anders, Teresa M. Pisabarro posted to 2008 db ppi by higueruelo on 2009-03-13 15:04:42 as along with 7 people dimka bicko chad_davis carlk jteyra paszkows Lombardo_7
	Recent Developments in Fragment-Based Drug Discovery [My Copy] Journal of Medicinal Chemistry, Vol. 51, No. 13. (1 July 2008), pp. 3661-3680. by Miles Congreve, Gianni Chessari, Dominic Tisi, Andrew J. Woodhead posted to 2008 fragments review by higueruelo on 2009-03-03 09:00:27 as along with 5 people and 1 group hmk ubcg08l jerome vaibhavdixit4 pslee Fragment Based Drug Discovery
	3did Update: domain-domain and peptide-mediated interactions of known 3D structure. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (25 January 2009), gkn690. by Amelie Stein, Alejandro Panjkovich, Patrick Aloy posted to 2008 3did db pdb ppi by higueruelo on 2009-02-10 15:12:06 as along with 4 people lptolik zdai neils barriot
	Non-ATP competitive protein kinase inhibitors as anti-tumor therapeutics. [My Copy] Biochemical pharmacology, Vol. 77, No. 10. (15 May 2009), pp. 1561-1571. by Lindsay O. Kirkland, Campbell McInnes posted to 2008 allosteric kinases ppi review by higueruelo on 2009-01-29 15:01:14 as along with 1 person guhjy
	The Thermodynamics of Protein-Ligand Interaction and Solvation: Insights for Ligand Design. [My Copy] Journal of molecular biology (9 October 2008) by Tjelvar S G S. Olsson, Mark A A. Williams, William R R. Pitt, John E E. Ladbury posted to 2008 sm-prot thermo xf by higueruelo on 2009-01-28 15:34:39 as along with 4 people and 1 group nickolay min013 dfgreen barry McCammon
	Satisfaction of hydrogen-bonding potential influences the conservation of polar sidechains. [My Copy] Proteins (2 September 2008) by Catherine L L. Worth, Tom L L. Blundell posted to 2008 aa-conserv by higueruelo on 2009-01-19 14:35:57 as along with 2 people bicko ramiro2k
	Comparison of composer and ORCHESTRAR. [My Copy] Proteins, Vol. 72, No. 4. (September 2008), pp. 1243-1258. by M. A. Dolan, M. Keil, D. S. Baker posted to 2008 homology review by higueruelo on 2009-01-19 14:22:23 as
	Development of an affinity evaluation and prediction system by using the shape complementarity characteristic between proteins. [My Copy] Journal of bioinformatics and computational biology, Vol. 6, No. 6. (December 2008), pp. 1133-1156. by K. Tsukamoto, T. Yoshikawa, Y. Hourai, K. Fukui, Y. Akiyama posted to 2008 ppdocking ppi shape by higueruelo on 2009-01-06 11:51:17 as
	Small-molecule Bcl-2 antagonists as targeted therapy in oncology. [My Copy] Current oncology (Toronto, Ont.), Vol. 15, No. 6. (December 2008), pp. 256-261. by M. R. Warr, G. C. Shore posted to 2008 bcl2 clinical ppi review sm xf by higueruelo on 2009-01-06 11:48:01 as
	Design and Applications of Bifunctional Small Molecules: Why Two Heads Are Better Than One. [My Copy] ACS chemical biology, Vol. 3, No. 11. (21 November 2008), pp. 677-692. by T. W. Corson, N. Aberle, C. M. Crews posted to 2008 dimer ppi sm xf by higueruelo on 2009-01-06 11:43:45 as
	PocketMatch: A new algorithm to compare binding sites in protein structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 543. by Kalidas Yeturu, Nagasuma Chandra posted to 2008 pocket by higueruelo on 2008-12-18 10:21:15 as along with 9 people and 1 group cdsouthan nanonan pauldobson sobolevnrm jteyra kshameer reyez tny druvus baker-group
	ElliPro: a new structure-based tool for the prediction of antibody epitopes. [My Copy] BMC bioinformatics, Vol. 9 (02 December 2008), 514. by Julia Ponomarenko, Huynh-Hoa H. Bui, Wei Li, et al.Nicholas Fusseder, Philip E. Bourne, Alessandro Sette, Bjoern Peters posted to 2008 ab ellipro interface software by higueruelo on 2008-12-10 17:39:26 as along with 3 people niallhaslam zwang phoenixzxl
	Rationally designed peptide regulators of protein kinase C. [My Copy] Trends in endocrinology and metabolism: TEM (2 December 2008) by Eric N N. Churchill, Nir Qvit, Daria Mochly-Rosen posted to 2008 peptides pkc ppi xf by higueruelo on 2008-12-10 17:35:50 as
	Do viral proteins possess unique biophysical features? [My Copy] Trends in biochemical sciences (3 December 2008) by Nobuhiko Tokuriki, Christopher J J. Oldfield, Vladimir N N. Uversky, Igor N N. Berezovsky, Dan S S. Tawfik posted to 2008 flexibility thermo by higueruelo on 2008-12-10 17:32:33 as along with 2 people and 2 groups sobolevnrm barry baker-group McCammon
	Hormone Signaling Through Protein Destruction - A Lesson From Plants. [My Copy] American journal of physiology. Endocrinology and metabolism (2 December 2008) by Xu Tan, Ning Zheng posted to 2008 glue ppi sm xf by higueruelo on 2008-12-10 17:31:33 as
	Inhibition of HIV Budding by a Genetically Selected Cyclic Peptide Targeting the Gag-TSG101 Interaction. [My Copy] ACS chemical biology (24 November 2008) by Ali Tavassoli, Quan Lu, Jongsik Gam, Hui Pan, Stephen J J. Benkovic, Stanley N N. Cohen posted to xf ppi peptides interface hiv1 2008 by higueruelo on 2008-12-10 17:28:57 as
	Potent, Orally Bioavailable Diazabicyclic Small-Molecule Mimetics of Second Mitochondria-Derived Activator of Caspases [My Copy] Journal of Medicinal Chemistry, Vol. 0, No. 0. (0000) by Yuefeng Peng, Haiying Sun, Zaneta Nikolovska-Coleska, et al.Su Qiu, Chao-Yie Yang, Jianfeng Lu, Qian Cai, Han Yi, Sanmao Kang, Dajun Yang, Shaomeng Wang posted to 2008 ppi sm smac xf by higueruelo on 2008-12-04 13:26:49 as
	Identification of a new JNK inhibitor targeting the JNK-JIP interaction site. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 43. (28 October 2008), pp. 16809-16813. by J. L. Stebbins, S. K. De, T. Machleidt, et al.B. Becattini, J. Vazquez, C. Kuntzen, L. H. Chen, J. F. Cellitti, M. Riel-Mehan, A. Emdadi, G. Solinas, M. Karin, M. Pellecchia posted to 2008 jnk ppi sm xf by higueruelo on 2008-12-03 12:02:27 as along with 1 person renatomilani
	Development and validation of an empirical free energy function for calculating protein–protein binding free energy surfaces [My Copy] Biophysical Chemistry (08 November 2008) by J. Audie posted to 2008 interface ppi thermo by higueruelo on 2008-12-02 13:06:21 as
	Predicting druggable binding sites at the protein-protein interface. [My Copy] Drug discovery today (25 November 2008) by Jonathan C C. Fuller, Nicholas J J. Burgoyne, Richard M M. Jackson posted to 2008 druggable pocket ppi review sm xf by higueruelo on 2008-12-02 13:02:38 as along with 4 people flbarroso tbinbal sschurer pslee
	Biochemistry. Controlled chaos. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5906. (28 November 2008), pp. 1340-1341. by V. N. Uversky, A. K. Dunker posted to 2008 disorder review by higueruelo on 2008-11-29 14:09:48 as along with 1 person mjoach
	Synthesis and Biological Evaluation of a 5-6-5 Imidazole-Phenyl-Thiazole Based α-Helix Mimetic [My Copy] Organic Letters, Vol. 11, No. 1. (1 January 2009), pp. 25-28. by Christopher G. Cummings, Nathan T. Ross, William P. Katt, Andrew D. Hamilton posted to 2008 alphahelix peptidomimetics ppi sm xf by higueruelo on 2008-11-29 14:08:05 as along with 1 person and 1 group oteri LOX-1 Receptor
	Beyond Picomolar Affinities: Quantitative Aspects of Noncovalent and Covalent Binding of Drugs to Proteins [My Copy] Journal of Medicinal Chemistry, Vol. 0, No. 0. (0000) by Adam J. Smith, Xiyun Zhang, Andrew G. Leach, K. N. Houk posted to 2008 sm-prot thermo by higueruelo on 2008-11-26 10:04:10 as along with 2 people sschurer carlosjavierna
	Crystallography and protein-protein interactions: biological interfaces and crystal contacts. [My Copy] Biochemical Society transactions, Vol. 36, No. Pt 6. (December 2008), pp. 1438-1441. by B. Kobe, G. Guncar, R. Buchholz, et al.T. Huber, B. Maco, N. Cowieson, J. L. Martin, M. Marfori, J. K. Forwood posted to 2008 4ari interface ppi by higueruelo on 2008-11-26 09:57:19 as
	alpha-Helix mimetics as inhibitors of protein-protein interactions. [My Copy] Biochemical Society transactions, Vol. 36, No. Pt 6. (December 2008), pp. 1414-1417. by I. Saraogi, A. D. Hamilton posted to 2008 peptidomimetics ppi sm xf by higueruelo on 2008-11-26 09:27:56 as along with 1 person emiko
	Topological properties of protein interaction networks from a structural perspective. [My Copy] Biochemical Society transactions, Vol. 36, No. Pt 6. (December 2008), pp. 1398-1403. by A. Gursoy, O. Keskin, R. Nussinov posted to 2008 graph ppi by higueruelo on 2008-11-26 09:27:05 as along with 2 people chica jfr
	Small-molecule inhibitors of the p53-HDM2 interaction for the treatment of cancer. [My Copy] Expert opinion on investigational drugs, Vol. 17, No. 12. (December 2008), pp. 1865-1882. by S. Patel, M. R. Player posted to 2008 mdm2 p53 ppi review sm xf by higueruelo on 2008-11-19 13:36:03 as
	Targeting the X-linked inhibitor of apoptosis protein through 4-substituted azabicyclo[5.3.0]alkane smac mimetics. Structure, activity, and recognition principles. [My Copy] Journal of molecular biology, Vol. 384, No. 3. (19 December 2008), pp. 673-689. by E. Mastrangelo, F. Cossu, M. Milani, et al.G. Sorrentino, D. Lecis, D. Delia, L. Manzoni, C. Drago, P. Seneci, C. Scolastico, V. Rizzo, M. Bolognesi posted to 2008 peptidomimetics ppi sm smac xf xiap by higueruelo on 2008-11-17 18:40:36 as along with 1 person and 1 group oteri Structural Biology Group TorVergata
	Design, Synthesis, and Evaluation of Tricyclic, Conformationally Constrained Small-Molecule Mimetics of Second Mitochondria-Derived Activator of Caspases [My Copy] Journal of Medicinal Chemistry by Bin Zhang, Zaneta Nikolovska-Coleska, Yan Zhang, et al.Longchuan Bai, Su Qiu, Chao-Yie Yang, Haiying Sun, Shaomeng Wang, Yikang Wu edited by S. Ac posted to 2008 ppi sm smac xf xiap by higueruelo on 2008-11-17 18:31:28 as
	Malleable machines take shape in eukaryotic transcriptional regulation. [My Copy] Nature chemical biology, Vol. 4, No. 12. (December 2008), pp. 728-737. by M. Fuxreiter, P. Tompa, I. Simon, V. N. Uversky, J. C. Hansen, F. J. Asturias posted to 2008 disorder by higueruelo on 2008-11-17 18:15:25 as along with 1 person tuannn
	Targeting Protein-Protein Interactions: Suppression of Stat3 Dimerization with Rationally Designed Small-Molecule, Nonpeptidic SH2 Domain Binders. [My Copy] Chembiochem : a European journal of chemical biology (12 November 2008) by Patrick T T. Gunning, Matthew P P. Glenn, Khandaker A Z A. Siddiquee, et al.William P P. Katt, Eric Masson, Saïd M M. Sebti, James Turkson, Andrew D D. Hamilton posted to 2008 peptidomimetics ppi sm stat3 xf by higueruelo on 2008-11-14 17:39:22 as
	Impact of Plasticity and Flexibility on Docking Results for Cytochrome P450 2D6: A Combined Approach of Molecular Dynamics and Ligand Docking [My Copy] J. Med. Chem. (11 November 2008) by Jozef Hritz, Anita de Ruiter, Chris Oostenbrink posted to 2008 docking flexibility sm-prot by higueruelo on 2008-11-12 16:28:36 as
	TOP-IDP-Scale: A New Amino Acid Scale Measuring Propensity for Intrinsic Disorder. [My Copy] Protein and peptide letters, Vol. 15, No. 9. (2008), pp. 956-963. by A. Campen, R. M. Williams, C. J. Brown, J. Meng, V. N. Uversky, A. K. Dunker posted to 2008 disorder by higueruelo on 2008-11-12 16:20:46 as along with 1 person pansapiens
	UniHI 4: new tools for query, analysis and visualization of the human protein-protein interactome. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (4 January 2009) by Gautam Chaurasia, Soniya Malhotra, Jenny Russ, et al.Sigrid Schnoegl, Christian Hänig, Erich E. Wanker, Matthias E. Futschik posted to 2008 db ppi by higueruelo on 2008-11-10 14:52:56 as along with 5 people daforerog reyez renatomilani grahamc guhjy
	PIPs: human protein-protein interaction prediction database [My Copy] Nucl. Acids Res., Vol. 37, No. Database issue. (6 November 2008), gkn870. by Mark D. Mcdowall, Michelle S. Scott, Geoffrey J. Barton posted to 2008 db ppi by higueruelo on 2008-11-10 14:51:22 as along with 5 people guhjy kgutwin cerca renatomilani grahamc
	An efficient approach to chiral C8/C9-piperazino-substituted 1,4-benzodiazepin-2-ones as peptidomimetic scaffolds. [My Copy] The Journal of organic chemistry, Vol. 73, No. 21. (7 November 2008), pp. 8458-8468. by S. Butini, E. Gabellieri, P. B. Huleatt, et al.G. Campiani, S. Franceschini, M. Brindisi, S. Ros, S. S. Coccone, I. Fiorini, E. Novellino, G. Giorgi, S. Gemma posted to 2008 peptidomimetics ppi sm xf by higueruelo on 2008-11-10 14:50:26 as
	Update of KDBI: Kinetic Data of Bio-molecular Interaction database [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D636-641. by Pankaj Kumar, B. C. Han, Z. Shi, et al.J. Jia, Y. P. Wang, Y. T. Zhang, L. Liang, Q. F. Liu, Z. L. Ji, Y. Z. Chen posted to 2008 db kdbi kinetics thermo by higueruelo on 2008-11-04 16:26:33 as along with 3 people Vincent_Rouilly lptolik guhjy
	Fragment-Based Design of Small Molecule X-Linked Inhibitor of Apoptosis Protein Inhibitors [My Copy] J. Med. Chem. (29 October 2008) by Jui-Wen Huang, Ziming Zhang, Bainan Wu, et al.Jason F. Cellitti, Xiyun Zhang, Russell Dahl, Chung-Wai Shiau, Kate Welsh, Aras Emdadi, John L. Stebbins, John C. Reed, Maurizio Pellecchia posted to 2008 fragments ppi sm smac xf xiap by higueruelo on 2008-10-30 11:53:08 as
	Function and structure of inherently disordered proteins [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 6. (23 December 2008), pp. 756-764. by A. Dunker, I. Silman, V. Uversky, J. Sussman posted to 2008 disorder by higueruelo on 2008-10-30 11:51:39 as along with 5 people kiekyon carlosjavierna priyaps guhjy paulschlesinger
	A new generation of peptide-based inhibitors targeting HIV-1 reverse transcriptase conformational flexibility. [My Copy] The Journal of biological chemistry (23 October 2008) by Audrey Agopian, Edwige Gros, Gudrun Aldrian-Herrada, Nathalie Bosquet, Pascal Clayette, Gilles Divita posted to 2008 flexibility hiv1 peptidomimetics by higueruelo on 2008-10-28 15:20:11 as along with 1 person raik
	Application of an allosteric model to describe the interactions among retinol binding protein 4, transthyretin, and small molecule retinol binding protein 4 ligands. [My Copy] Analytical biochemistry (12 October 2008) by Peter Coward, Marion Conn, Jie Tang, Fei Xiong, Anthony Menjares, Jeff D D. Reagan posted to 2008 allosteric ppi rbp4 sm xf by higueruelo on 2008-10-28 11:42:54 as
	Structure-Based Design, Synthesis, Evaluation, and Crystallographic Studies of Conformationally Constrained Smac Mimetics as Inhibitors of the X-linked Inhibitor of Apoptosis Protein (XIAP) [My Copy] J. Med. Chem. (28 October 2008) by Haiying Sun, Jeanne A. Stuckey, Zaneta Nikolovska-Coleska, et al.Dongguang Qin, Jennifer L. Meagher, Su Qiu, Jianfeng Lu, Chao-Yie Yang, Naoyuki G. Saito, Shaomeng Wang posted to 2008 ppi sm smac xf xiap by higueruelo on 2008-10-28 10:28:32 as
	2D depiction of nonbonding interactions for protein complexes. [My Copy] Journal of computational chemistry (22 October 2008) by Peng Zhou, Feifei Tian, Zhicai Shang posted to 2008 2d ppi software by higueruelo on 2008-10-27 14:08:36 as along with 2 people and 3 groups whitead barry Jiang Research Group structural_bioinformatics McCammon
	Design and Applications of Bifunctional Small Molecules: Why Two Heads Are Better Than One. [My Copy] ACS chemical biology (24 October 2008) by Timothy W. Corson, Nicholas Aberle, Craig M. Crews posted to 2008 ppi review sm xf by higueruelo on 2008-10-27 14:00:59 as
	Screening Outside the Catalytic Site: Inhibition of Macromolecular Inter-actions Through Structure-Based Virtual Ligand Screening Experiments. [My Copy] The open biochemistry journal, Vol. 2 (2008), pp. 29-37. by O. Sperandio, M. A. Miteva, K. Segers, G. A. Nicolaes, B. O. Villoutreix posted to 2008 method ppi review sm xf by higueruelo on 2008-10-27 13:56:41 as
	Identification of hot-spot residues in protein-protein interactions by computational docking. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Solène Grosdidier, Juan Fernández-Recio posted to 2008 hotspots ppdocking ppi by higueruelo on 2008-10-23 18:07:48 as along with 6 people ubcg08l pablocarb bicko grahamc i000 neils
	Peptides as protein binding site mimetics [My Copy] Current Opinion in Chemical Biology, Vol. 12, No. 6. (17 December 2008), pp. 707-713. by J. Eichler posted to 2008 peptidomimetics ppi review xf by higueruelo on 2008-10-22 17:56:04 as along with 1 person skywalkerus02
	IAP-targeted therapies for cancer. [My Copy] Oncogene, Vol. 27, No. 48. (30 October 2008), pp. 6252-6275. by E. C. LaCasse, D. J. Mahoney, H. H. Cheung, S. Plenchette, S. Baird, R. G. Korneluk posted to 2008 ppi review sm smac xf by higueruelo on 2008-10-22 17:52:41 as
	Design of small-molecule peptidic and nonpeptidic smac mimetics. [My Copy] Accounts of chemical research, Vol. 41, No. 10. (October 2008), pp. 1264-1277. by H. Sun, Z. Nikolovska-Coleska, C. Y. Yang, et al.D. Qian, J. Lu, S. Qiu, L. Bai, Y. Peng, Q. Cai, S. Wang posted to 2008 ppi sm smac xf by higueruelo on 2008-10-22 17:51:22 as
	Structure-Activity Relationship Studies of Phenanthridine-Based Bcl-XL Inhibitors [My Copy] J. Med. Chem. (17 October 2008) by Paul H. Bernardo, Kah-Fei Wan, Thirunavukkarasu Sivaraman, et al.Jin Xu, Felicity K. Moore, Alvin W. Hung, Henry Y. Mok, Victor C. Yu, Christina L. Chai posted to 2008 bclxl ppi sm xf by higueruelo on 2008-10-20 12:50:57 as

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ppi	438
xf	262
sm	241
review	165
2008	164
2007	144
2009	142
flexibility	84
interface	78
2005	58
2006	57
peptidomimetics	51
disorder	41
intimbal	41
2004	35
druggable	34
thermo	33
allosteric	32
db	27
sm-prot	27
p53	26
hotspots	25
dynamics	24
peptides	24
pocket	24
mdm2	22
bcl2	21
fragments	21
struct-determination	21
2002	20
complex	20
hiv1	19
2003	17
method	17
ctmc7	16
nmr	16
ab	14
ppdocking	13
smac	13
2001	12
kinases	12
xiap	12
graph	11
shape	11
tpo	11
bclxl	10
nma	10
assays	8
docking	8
max	8
myc	8
sunesis	8
2000	7
abbott	7
alascanning	7
alphahelix	7
amyloid	7
buried-surface	7
folding	7
integrins	7
scissors	7
software	7
systemsbio	7
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props	6
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epo	5
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xpf	1
yeast2hybrid	1

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