higueruelo's dynamics [24 articles] Export

Recent papers added to higueruelo's library classified by the tag dynamics. You can also see everyone's dynamics.

	Computational Methods for Predicting Sites of Functionally Important Dynamics [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Adam D. Schuyler, Heather A. Carlson, Eva L. Feldman posted to 2009 allosteric dynamics by higueruelo on 2009-04-24 17:02:30 as along with 5 people and 1 group skywalkerus02 agrossfield ubcg08l barry sobolevnrm baker-group
	Understanding antibody-antigen associations by molecular dynamics simulations: detection of important intra- and inter-molecular salt bridges. [My Copy] Cell biochemistry and biophysics, Vol. 47, No. 3. (2007), pp. 361-375. by N. Sinha, Y. Li, C. A. Lipschultz, S. J. Smith-Gill posted to 2007 ab dynamics by higueruelo on 2009-01-19 12:23:32 as
	What induces pocket openings on protein surface patches involved in protein-protein interactions? [My Copy] Journal of computer-aided molecular design, Vol. 23, No. 2. (6 February 2009), pp. 73-86. by Susanne Eyrisch, Volkhard Helms posted to 2008 dynamics flexibility nma pocket ppi xf by higueruelo on 2008-09-10 15:58:12 as along with 3 people and 1 group arifor allmensch jmccammon McCammon
	Role of protein flexibility in the design of Bcl-X(L) targeting agents: insight from molecular dynamics. [My Copy] Journal of computer-aided molecular design (9 September 2008) by William Novak, Hongming Wang, Goran Krilov posted to 2008 dynamics flexibility ppi by higueruelo on 2008-09-10 14:53:31 as along with 2 people LamBras paulschlesinger
	Normal Modes and Essential Dynamics [My Copy] Molecular Modeling of Proteins, Vol. 443 (2008), pp. 89-106. by Steven Hayward, Bert L. Groot posted to 2008 dynamics flexibility nma by higueruelo on 2008-07-07 16:36:48 as along with 4 people and 1 group arybakov ruvido csrocha LamBras structural_bioinformatics
	Exploring the Energy Landscape of Antibody-Antigen Complexes: Protein Dynamics, Flexibility, and Molecular Recognition [My Copy] Biochemistry, Vol. 47, No. 27. (8 July 2008), pp. 7237-7247. by Megan C. Thielges, Jörg Zimmermann, Wayne Yu, Masayuki Oda, Floyd E. Romesberg posted to 2008 ab dynamics flexibility by higueruelo on 2008-07-01 14:10:41 as
	Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution [My Copy] Science, Vol. 320, No. 5882. (13 June 2008), pp. 1471-1475. by Oliver F. Lange, Nils-Alexander Lakomek, Christophe Fares, et al.Gunnar F. Schroder, Korvin F. A. Walter, Stefan Becker, Jens Meiler, Helmut Grubmuller, Christian Griesinger, Bert L. de Groot posted to 2008 dynamics flexibility by higueruelo on 2008-06-24 20:09:59 as along with 6 people and 3 groups anna_yershova edws paulschlesinger barry jmccammon cchang structural_bioinformatics McCammon Chang group
	BIOCHEMISTRY: How Do Proteins Interact? [My Copy] Science, Vol. 320, No. 5882. (13 June 2008), pp. 1429-1430. by David D. Boehr, Peter E. Wright posted to 2008 disorder dynamics flexibility ppi by higueruelo on 2008-06-24 20:06:28 as along with 6 people victorclaessen boris_aguilar reyez dchughes dullhunk paulschlesinger
	Quantitative lid dynamics of MDM2 reveals differential ligand binding modes of the p53-binding cleft. [My Copy] Journal of the American Chemical Society, Vol. 130, No. 20. (21 May 2008), pp. 6472-6478. by S. A. Showalter, L. Bruschweiler-Li, E. Johnson, F. Zhang, R. Brüschweiler posted to 2008 complex dynamics flexibility mdm2 p53 ppi sm by higueruelo on 2008-06-24 19:48:58 as
	Solution Conformations and Dynamics of ABL Kinase-Inhibitor Complexes Determined by NMR Substantiate the Different Binding Modes of Imatinib/Nilotinib and Dasatinib [My Copy] J. Biol. Chem., Vol. 283, No. 26. (27 June 2008), pp. 18292-18302. by Navratna Vajpai, Andre Strauss, Gabriele Fendrich, et al.Sandra W. Cowan-Jacob, Paul W. Manley, Stephan Grzesiek, Wolfgang Jahnke posted to 2008 abl dynamics flexibility kinases by higueruelo on 2008-06-24 18:44:18 as
	Active Site Pressurization: A New Tool for Structure-Guided Drug Design and Other Studies of Protein Flexibility [My Copy] J. Chem. Inf. Model. (14 June 2008) by Ian M. Withers, Michael P. Mazanetz, Hao Wang, Peter M. Fischer, Charles A. Laughton posted to 2008 dynamics flexibility pocket by higueruelo on 2008-06-24 18:41:56 as
	Coupling of global and local vibrational modes in dynamic allostery of proteins. [My Copy] Biophys J (23 June 2006) by Rhoda J J. Hawkins, Tom C B C. McLeish posted to 2006 allosteric dynamics xf by higueruelo on 2008-03-26 10:30:49 as along with 2 people lna choonpeng
	Overcoming the Inadequacies or Limitations of Experimental Structures as Drug Targets by Using Computational Modeling Tools and Molecular Dynamics Simulations [My Copy] ChemMedChem, Vol. 2, No. 10. (2007), pp. 1388-1401. by Esther Marco, Federico Gago posted to 2007 dynamics flexibility nma review xf by higueruelo on 2008-03-25 15:02:25 as along with 1 person dimka
	Inhibitor discovery targeting the intermediate structure of beta-amyloid peptide on the conformational transition pathway: implications in the aggregation mechanism of beta-amyloid peptide. [My Copy] Biochemistry, Vol. 45, No. 36. (12 September 2006), pp. 10963-10972. by D. Liu, Y. Xu, Y. Feng, et al.H. Liu, X. Shen, K. Chen, J. Ma, H. Jiang posted to 2006 amyloid dynamics flexibility ppi sm xf by higueruelo on 2008-03-19 10:48:28 as
	Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes. [My Copy] Structure (Camb), Vol. 13, No. 3. (March 2005), pp. 373-380. by J. Ma posted to 2005 dynamics flexibility nma review by higueruelo on 2008-03-19 10:27:13 as along with 3 people RamuAnandakrishnan aqeel shuns
	The Allosteric Mechanism of Yeast Chorismate Mutase: A Dynamic Analysis [My Copy] Journal of Molecular Biology, Vol. 356, No. 1. (10 February 2006), pp. 237-247. by Yifei Kong, Jianpeng Ma, Martin Karplus, William N. Lipscomb posted to 2006 allosteric dynamics flexibility nma by higueruelo on 2008-03-19 10:16:45 as along with 2 people and 2 groups barry ruvido structural_bioinformatics Bioinformatics
	Inhibition Mechanism of the Acetylcholine Receptor by α-Neurotoxins as Revealed by Normal-Mode Dynamics [My Copy] Biochemistry (8 March 2008) by Abraham O. Samson, Michael Levitt posted to 2008 dynamics flexibility nma xf by higueruelo on 2008-03-14 14:41:39 as
	Molecular Dynamics: Survey of Methods for Simulating the Activity of Proteins [My Copy] Chemical Reviews, Vol. 106, No. 5. (1 May 2006), pp. 1589-1615. by Stewart A. Adcock, J. Andrew Mccammon posted to 2006 dynamics review by higueruelo on 2008-02-21 16:57:18 as along with 5 people flbarroso yxue tovrstra aqeel LamBras
	An improved relaxed complex scheme for receptor flexibility in computer-aided drug design. [My Copy] J Comput Aided Mol Des (15 January 2008) by Rommie E. Amaro, Riccardo Baron, J A. McCammon posted to 2008 dynamics flexibility sm-prot by higueruelo on 2008-02-21 16:55:41 as along with 6 people and 2 groups karinaecomp oteri jmccammon rbaron kazemi LamBras Structural Biology Group TorVergata McCammon
	Interactions in Native Binding Sites Cause a Large Change in Protein Dynamics [My Copy] Journal of Molecular Biology, Vol. 358, No. 1. (21 April 2006), pp. 213-223. by Dengming Ming, Michael E. Wall posted to 2006 allosteric dynamics by higueruelo on 2008-02-21 14:05:35 as along with 2 people aqeel ruvido
	Protein flexibility and dynamics using constraint theory. [My Copy] J Mol Graph Model, Vol. 19, No. 1. (2001), pp. 60-69. by M. F. Thorpe, M. Lei, A. J. Rader, D. J. Jacobs, L. A. Kuhn posted to 2001 dynamics flexibility graph xf by higueruelo on 2008-02-03 11:25:17 as along with 4 people lna aqeel blackbart LamBras
	Protein flexibility using constraints from molecular dynamics simulations. [My Copy] Phys Biol, Vol. 2, No. 4. (November 2005) by T. Mamonova, B. Hespenheide, R. Straub, M. F. Thorpe, M. Kurnikova posted to 2005 dynamics flexibility xf by higueruelo on 2008-02-03 11:21:22 as along with 3 people and 1 group lna xdeupi LamBras LabCompMed
	Bridging from molecular simulation to biochemical networks [My Copy] Current Opinion in Structural Biology, Vol. 17, No. 2. (April 2007), pp. 166-172. by M STEIN,, R GABDOULLINE,, R WADE, posted to 2007 dynamics ppi review by higueruelo on 2008-02-03 10:40:58 as along with 10 people and 1 group cjryan anuragsethi choonpeng oteri ocs aqeel Borelli cmmorel julius ras Structural Biology Group TorVergata
	Fast dynamics perturbation analysis for prediction of protein functional sites [My Copy] BMC Structural Biology, Vol. 8 (30 January 2008), 5. by Dengming Ming, Judith D. Cohn, Michael E. Wall posted to 2008 dynamics pocket by higueruelo on 2008-02-02 19:32:01 as along with 1 person tjimenez

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higueruelo's dynamics [24 articles] Export

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