higueruelo's interface [78 articles] Export

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	A novel and efficient tool for locating and characterizing protein cavities and binding sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (11 September 2009), NA. by Ashutosh Tripathi, Glen E. Kellogg posted to shape ppi pocket interface 2009 by higueruelo on 2009-11-03 16:48:01 as along with 2 people nickolay ahmetbakan
	Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (30 October 2009), 365. by Stefano Lise, Cedric Archambeau, Massimiliano Pontil, David Jones posted to ppi interface hotspots 2009 by higueruelo on 2009-11-03 16:40:16 as along with 6 people and 1 group sillitoe apaydin kshameer zwang phoenixzxl neils Orengo Group Journal Picks
	The interwinding nature of protein-protein interfaces and its implication for protein complex formation [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3108-3113. by Kei Yura, Steven Hayward posted to ppi interface disorder 2009 by higueruelo on 2009-10-02 12:33:32 as along with 4 people kshameer dfdong tprpip phoenixzxl
	Computational fragment-based binding site identification by ligand competitive saturation. [My Copy] PLoS computational biology, Vol. 5, No. 7. (10 July 2009), e1000435. by Olgun Guvench, Alexander D. MacKerell posted to 2009 fragments interface pocket by higueruelo on 2009-08-10 16:28:39 as along with 5 people and 2 groups oteri NickFurnham TRHvidsten barry riffraff structural_bioinformatics McCammon
	Computational design of affinity and specificity at protein–protein interfaces [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 4. (29 August 2009), pp. 458-463. by John Karanicolas, Brian Kuhlman posted to 2009 computational interface ppi scissors thermo by higueruelo on 2009-08-10 14:33:09 as along with 4 people bmduggan sobolevnrm VGreiff barry
	In silico-in vitro screening of protein-protein interactions: towards the next generation of therapeutics. [My Copy] Current pharmaceutical biotechnology, Vol. 9, No. 2. (April 2008), pp. 103-122. by B. O. Villoutreix, K. Bastard, O. Sperandio, et al.R. Fahraeus, J. L. Poyet, F. Calvo, B. Déprez, M. A. Miteva posted to 2009 computational druggable interface ppi sm by higueruelo on 2009-07-29 14:54:32 as along with 1 person flbarroso
	Energy based approach for understanding the recognition mechanism in protein-protein complexes. [My Copy] Molecular bioSystems (7 July 2009) by Michael M. Gromiha, Kiyonobu Yokota, Kazuhiko Fukui posted to 2009 hotspots interface ppi by higueruelo on 2009-07-29 14:44:53 as
	Physicochemical principles that regulate the competition between functional and dysfunctional association of proteins. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 25. (23 June 2009), pp. 10159-10164. by S. Pechmann, E. D. Levy, G. G. Tartaglia, M. Vendruscolo posted to 2009 buried-surface interface ppi by higueruelo on 2009-07-06 18:00:08 as
	Sequence patches on MAPK surfaces define protein-protein interactions. [My Copy] Genome biology, Vol. 10, No. 6. (5 June 2009) by Gary L. Johnson, Shawn M. Gomez posted to 2009 interface ppi by higueruelo on 2009-07-06 17:58:26 as along with 1 person carlk
	The analysis of the drug-targets based on the topological properties in the human protein-protein interaction network. [My Copy] Journal of drug targeting (16 June 2009) by Mingzhu Zhu, Lei Gao, Xia Li, et al.Zhicheng Liu, Chun Xu, Yuqing Yan, Erin Walker, Wei Jiang, Bin Su, Xiujie Chen, Hui Lin posted to 2009 druggable interface ppi by higueruelo on 2009-06-29 14:14:11 as
	A feature-based approach to modeling protein-protein interaction hot spots [My Copy] Nucl. Acids Res., Vol. 37, No. 8. (1 May 2009), pp. 2672-2687. by Kyu-Il Cho, Dongsup Kim, Doheon Lee posted to 2009 hotspots interface ppi xf by higueruelo on 2009-03-17 16:45:45 as along with 5 people pablocarb flbarroso phoenixzxl zwang neils
	Shelling the Voronoi interface of protein-protein complexes reveals patterns of residue conservation, dynamics, and composition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 3. (23 January 2009), pp. 677-692. by Benjamin Bouvier, Raik Grünberg, Michael Nilges, Frédéric Cazals posted to 2009 interface ppi xf by higueruelo on 2009-03-17 16:43:34 as along with 2 people and 1 group richardbickerton sobolevnrm baker-group
	Identifying protein–protein interaction sites in transient complexes with temperature factor, sequence profile and accessible surface area [My Copy] Amino Acids by Rong Liu, Wenchao Jiang, Yanhong Zhou posted to 2009 bfactor interface pocket ppi by higueruelo on 2009-02-17 13:43:10 as along with 1 person dfdong
	Improving the Accuracy of an Affinity Prediction Method by Using Statistics on Shape Complementarity between Proteins [My Copy] Journal of Chemical Information and Modeling, Vol. 0, No. 0. (0000) by Tatsuya Yoshikawa, Koki Tsukamoto, Yuichiro Hourai, Kazuhiko Fukui posted to 2009 interface ppdocking shape by higueruelo on 2009-02-12 17:06:10 as along with 1 person timg
	Principal determinants leading to transition state formation of a protein-protein complex, orientation trumps side-chain interactions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (5 February 2009) by James R R. Horn, Tobin R R. Sosnick, Anthony A A. Kossiakoff posted to 2009 hotspots interface ppi thermo ts by higueruelo on 2009-02-10 09:40:36 as along with 2 people and 2 groups amishp barry structural_bioinformatics McCammon
	Prediction of protein-protein interaction types using association rule based classification [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009) by Sung H. Park, Jose Reyes, David Gilbert, Ji W. Kim, Sangsoo Kim posted to 2009 complex interface ppi software by higueruelo on 2009-02-02 12:22:56 as along with 4 people anf renatomilani grahamc neils
	Prediction of Protein–Protein Interaction Sites in Sequences and 3D Structures by Random Forests [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (30 January 2009), e1000278. by Mile Šikić, Sanja Tomić, Kristian Vlahoviček posted to 2009 interface pocket ppi by higueruelo on 2009-02-02 12:19:21 as along with 7 people and 2 groups roys svozil marti barry grahamc kshameer neils structural_bioinformatics McCammon
	VASCo: computation and visualization of annotated protein surface contacts [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 32. by Georg Steinkellner, Robert Rader, Gerhard Thallinger, Christoph Kratky, Karl Gruber posted to 2009 interface ppi software by higueruelo on 2009-01-29 15:03:46 as along with 5 people richardbickerton superpyrin kshameer neils svozil
	ElliPro: a new structure-based tool for the prediction of antibody epitopes. [My Copy] BMC bioinformatics, Vol. 9 (02 December 2008), 514. by Julia Ponomarenko, Huynh-Hoa H. Bui, Wei Li, et al.Nicholas Fusseder, Philip E. Bourne, Alessandro Sette, Bjoern Peters posted to 2008 ab ellipro interface software by higueruelo on 2008-12-10 17:39:26 as along with 3 people niallhaslam zwang phoenixzxl
	Inhibition of HIV Budding by a Genetically Selected Cyclic Peptide Targeting the Gag-TSG101 Interaction. [My Copy] ACS chemical biology (24 November 2008) by Ali Tavassoli, Quan Lu, Jongsik Gam, Hui Pan, Stephen J J. Benkovic, Stanley N N. Cohen posted to xf ppi peptides interface hiv1 2008 by higueruelo on 2008-12-10 17:28:57 as
	Development and validation of an empirical free energy function for calculating protein–protein binding free energy surfaces [My Copy] Biophysical Chemistry (08 November 2008) by J. Audie posted to 2008 interface ppi thermo by higueruelo on 2008-12-02 13:06:21 as
	Crystallography and protein-protein interactions: biological interfaces and crystal contacts. [My Copy] Biochemical Society transactions, Vol. 36, No. Pt 6. (December 2008), pp. 1438-1441. by B. Kobe, G. Guncar, R. Buchholz, et al.T. Huber, B. Maco, N. Cowieson, J. L. Martin, M. Marfori, J. K. Forwood posted to 2008 4ari interface ppi by higueruelo on 2008-11-26 09:57:19 as
	Computational Design of Calmodulin Mutants with up to 900-Fold Increase in Binding Specificity. [My Copy] Journal of molecular biology (27 September 2008) by Eliyahu Yosef, Regina Politi, Mee H H. Choi, Julia M M. Shifman posted to 2008 interface mutant-design ppi by higueruelo on 2008-10-14 12:50:58 as along with 2 people and 1 group msuarezdiez barry McCammon
	Short Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regions. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by S. Ren, V. N. Uversky, Z. Chen, A. K. Dunker, Z. Obradovic posted to 2008 disorder interface morfs by higueruelo on 2008-10-14 12:41:12 as along with 2 people hryk carlosjavierna
	Computational redesign of the SHV-1 beta-lactamase/beta-lactamase inhibitor protein interface. [My Copy] Journal of molecular biology, Vol. 382, No. 5. (24 October 2008), pp. 1265-1275. by K. A. Reynolds, M. S. Hanes, J. M. Thomson, et al.A. J. Antczak, J. M. Berger, R. A. Bonomo, J. F. Kirsch, T. M. Handel posted to 2008 interface ppi by higueruelo on 2008-10-05 12:18:29 as along with 1 person jwm
	Protein-protein interaction and quaternary structure. [My Copy] Quarterly reviews of biophysics, Vol. 41, No. 2. (May 2008), pp. 133-180. by J. Janin, R. P. Bahadur, P. Chakrabarti posted to 2008 4ari interface ppi review by higueruelo on 2008-09-26 15:01:56 as along with 2 people flbarroso carlk
	Shape complementarity at protein/protein interfaces. [My Copy] Journal of molecular biology, Vol. 234, No. 4. (20 December 1993), pp. 946-950. by M. C. Lawrence, P. M. Colman posted to 1993 interface ppi sc shape by higueruelo on 2008-09-24 12:28:37 as along with 3 people and 2 groups qluo jwm kintoki Radiation_Damage Stressosome
	Comprehensive statistical analysis of residues interaction specificity at protein-protein interfaces. [My Copy] Proteins, Vol. 67, No. 4. (1 June 2007), pp. 1060-1077. by A. Anashkina, E. Kuznetsov, N. Esipova, V. Tumanyan posted to 2007 interface ppi by higueruelo on 2008-09-10 16:51:44 as along with 2 people bicko choonpeng
	Molecular characterization of the NCoA-1-STAT 6 interaction. [My Copy] Chembiochem : a European journal of chemical biology, Vol. 9, No. 8. (23 May 2008), pp. 1318-1322. by M. Seitz, L. T. Maillard, D. Obrecht, J. A. Robinson posted to 2008 complex interface peptides ppi xf by higueruelo on 2008-06-16 15:45:03 as
	Protein Surface Conservation in Binding Sites [My Copy] J. Chem. Inf. Model. (14 May 2008) by Nejc Carl, Janez Konc, Dušanka Janežič posted to 2008 interface pocket ppi by higueruelo on 2008-05-20 08:33:33 as
	Locating interaction sites on proteins: the crystal structure of thermolysin soaked in 2% to 100% isopropanol. [My Copy] Proteins, Vol. 37, No. 4. (1 December 1999), pp. 628-640. by A. C. English, S. H. Done, L. S. Caves, C. R. Groom, R. E. Hubbard posted to 1999 interface by higueruelo on 2008-04-28 14:26:36 as along with 1 person ubcg08l
	Experimental and computational mapping of the binding surface of a crystalline protein. [My Copy] Protein engineering, Vol. 14, No. 1. (January 2001), pp. 47-59. by A. C. English, C. R. Groom, R. E. Hubbard posted to 2001 interface by higueruelo on 2008-04-28 14:25:23 as along with 1 person ubcg08l
	Spatial chemical conservation of hot spot interactions in protein-protein complexes [My Copy] BMC Biology, Vol. 5 (09 October 2007), 43. by Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson posted to 2007 hotspots interface ppi xf by higueruelo on 2008-03-26 10:36:04 as along with 3 people bicko IrinaMoreira marti
	Principles of Protein-Protein Interactions: What are the Preferred Ways For Proteins To Interact? [My Copy] Chem. Rev. (21 March 2008) by O. Keskin, A. Gursoy, B. Ma, R. Nussinov posted to 2008 interface ppi review xf by higueruelo on 2008-03-26 10:24:25 as along with 5 people and 1 group jmrivort allmensch GermanErlenkamp winterschlaefer kintoki Supramolecular
	On the Role of Electrostatic Interactions in the Design of Protein–Protein Interfaces [My Copy] Journal of Molecular Biology, Vol. 318, No. 1. (19 April 2002), pp. 161-177. by F. Sheinerman posted to 2002 electrostatic interface ppi by higueruelo on 2008-02-28 10:32:23 as along with 3 people flbarroso boris_aguilar carlescorbi
	Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces [My Copy] Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2850-2855. by A. Selim Aytuna, Attila Gursoy, Ozlem Keskin posted to 2005 interface ppi xf by higueruelo on 2008-02-25 13:03:43 as along with 4 people cjeans selrac bicko kgutwin
	A quantitative analysis of interfacial amino acid conservation in protein-protein hetero complexes. [My Copy] J Bioinform Comput Biol, Vol. 3, No. 5. (October 2005), pp. 1137-1150. by B. V. Reddy, Y. N. Kaznessis posted to 2005 ab antigen interface ppi xf by higueruelo on 2008-02-25 13:01:30 as
	Similar binding sites and different partners: implications to shared proteins in cellular pathways. [My Copy] Structure, Vol. 15, No. 3. (March 2007), pp. 341-354. by O. Keskin, R. Nussinov posted to 2007 interface ppi xf by higueruelo on 2008-02-25 12:59:14 as along with 3 people bicko choonpeng marti
	Favorable scaffolds: proteins with different sequence, structure and function may associate in similar ways [My Copy] Protein Engineering, Design and Selection, Vol. 18, No. 1. (January 2005), pp. 11-24. by Ozlem Keskin, Ruth Nussinov posted to 2005 interface ppi xf by higueruelo on 2008-02-25 12:57:45 as along with 1 person conkymacro
	Interaction geometry involving planar groups in protein-protein interfaces [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 1. (2007), pp. 84-97. by Rudra P. Saha, Rajasri Bhattacharyya, Pinak Chakrabarti posted to 2007 interface ppi by higueruelo on 2008-02-11 13:35:24 as along with 2 people bicko choonpeng
	Similar chemistry, but different bond preferences in inter versus intra-protein interactions. [My Copy] Proteins (7 February 2008) by Mati Cohen, Dana Reichmann, Hani Neuvirth, Gideon Schreiber posted to 2008 interface ppi xf by higueruelo on 2008-02-11 12:57:48 as along with 5 people kgutwin RebeccaHamer viktor21614 bicko Lombardo_7
	An algorithm for predicting protein-protein interaction sites: Abnormally exposed amino acid residues and secondary structure elements. [My Copy] Protein Sci, Vol. 15, No. 5. (May 2006), pp. 1017-1029. by J. Hoskins, S. Lovell, T. L. Blundell posted to 2006 interface ppi by higueruelo on 2008-02-06 20:08:38 as along with 4 people mkotlyar kshameer bicko drastic
	Interaction-site prediction for protein complexes: a critical assessment [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2203-2209. by Huan-Xiang Zhou, Sanbo Qin posted to 2007 interface ppdocking ppi review xf by higueruelo on 2008-02-06 20:06:55 as along with 14 people dfdong jinghu_fandm flbarroso timg phoenixzxl tjimenez bicko malcook zwang cabbagezs niallhaslam carlescorbi marti kintoki
	Structure, function, and evolution of transient and obligate proteinâprotein interactions [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 31. (2 August 2005), pp. 10930-10935. by Julian Mintseris, Zhiping Weng posted to 2005 interface ppi by higueruelo on 2008-02-03 11:46:45 as along with 12 people and 3 groups dfdong timg mgomes barry bjorns wiehe julianm bicko chad_davis cjeans Evangelia marti structural_bioinformatics ZLAB Bioinformatics
	Are protein-protein interfaces more conserved in sequence than the rest of the protein surface? [My Copy] Protein science : a publication of the Protein Society, Vol. 13, No. 1. (January 2004), pp. 190-202. by D. R. Caffrey, S. Somaroo, J. D. Hughes, J. Mintseris, E. S. Huang posted to 2004 interface ppi by higueruelo on 2008-02-03 11:45:44 as along with 4 people chica bicko cjeans Evangelia
	Computational analyses of the surface properties of protein--protein interfaces [My Copy] Acta Crystallographica Section D, Vol. 63, No. 1. (Jan 2007), pp. 50-57. by Jan Gruber, Alexander Zawaira, Rhodri Saunders, C. Paul Barrett, Martin E. M. Noble posted to 2007 interface ppi by higueruelo on 2008-02-03 11:43:13 as along with 3 people jinghu_fandm flbarroso bicko
	Revisiting the Voronoi description of protein-protein interfaces. [My Copy] Protein Sci, Vol. 15, No. 9. (September 2006), pp. 2082-2092. by F. Cazals, F. Proust, R. P. Bahadur, J. Janin posted to 2006 interface ppi by higueruelo on 2008-02-03 11:33:35 as along with 3 people dgruiz bicko kdesmond
	Ten thousand interactions for the molecular biologist [My Copy] Nature Biotechnology, Vol. 22, No. 10. (06 October 2004), pp. 1317-1321. by Patrick Aloy, Robert B. Russell posted to 2004 interface ppi review by higueruelo on 2008-02-03 11:10:49 as along with 14 people and 2 groups krapnik ucbcjbm flbarroso mikaellund baaden jwm bicko chad_davis dullhunk dgront drastic ruvido Evangelia timg Radiation_Damage Stressosome
	Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach. [My Copy] Physical biology, Vol. 2, No. 2. (June 2005) by Ozlem Keskin, Buyong Ma, Kristina Rogale, K. Gunasekaran, Ruth Nussinov posted to 2005 hotspots interface review systemsbio by higueruelo on 2008-02-03 11:07:23 as along with 3 people marti bicko choonpeng
	RESTRICTED MOBILITY OF CONSERVED RESIDUES IN PROTEIN-PROTEIN INTERFACES IN MOLECULAR SIMULATIONS. [My Copy] Biophys J (28 January 2008) by S Bora B. Erdemli, O Nuri N. Yogurtcu, Metin Turkay, Ruth Nussinov, Ozlem Keskin posted to 2008 flexibility hotspots interface ppi xf by higueruelo on 2008-02-03 11:05:05 as along with 3 people bicko jlh64 marti

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ppi	438
xf	262
sm	241
review	165
2008	164
2007	144
2009	142
flexibility	84
interface	78
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2006	57
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higueruelo's interface [78 articles] Export

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