higueruelo's ppi [at least 200 articles] Export

Recent papers added to higueruelo's library classified by the tag ppi. You can also see everyone's ppi.

	Direct inhibition of the NOTCH transcription factor complex [My Copy] Nature, Vol. 462, No. 7270. (12 November 2009), pp. 182-188. by Raymond E. Moellering, Melanie Cornejo, Tina N. Davis, et al.Cristina D. Bianco, Jon C. Aster, Stephen C. Blacklow, Andrew L. Kung, D. Gary Gilliland, Gregory L. Verdine, James E. Bradner posted to xf ppi peptidomimetics notch alphahelix by higueruelo on 2009-11-26 16:36:57 as along with 4 people renatomilani gbloeb qshao cchand
	A novel and efficient tool for locating and characterizing protein cavities and binding sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (11 September 2009), NA. by Ashutosh Tripathi, Glen E. Kellogg posted to shape ppi pocket interface 2009 by higueruelo on 2009-11-03 16:48:01 as along with 2 people nickolay ahmetbakan
	Identification of Lead Compounds As Antagonists of Protein Bcl-xL with a Diversity-Oriented Multidisciplinary Approach [My Copy] Journal of Medicinal Chemistry, Vol. 0, No. 0. (23 October 0000) by Simone Di Micco, Romina Vitale, Maurizio Pellecchia, et al.Michele F. Rega, Renata Riva, Andrea Basso, Giuseppe Bifulco posted to xf sm ppi dos bclxl 2009 by higueruelo on 2009-11-03 16:43:30 as along with 1 person jianfengcai
	Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (30 October 2009), 365. by Stefano Lise, Cedric Archambeau, Massimiliano Pontil, David Jones posted to ppi interface hotspots 2009 by higueruelo on 2009-11-03 16:40:16 as along with 6 people and 1 group sillitoe apaydin kshameer zwang phoenixzxl neils Orengo Group Journal Picks
	N-Acylpolyamine inhibitors of HDM2 and HDMX binding to p53. [My Copy] Bioorganic & medicinal chemistry (21 October 2009) by Ryo Hayashi, Deyun Wang, Toshiaki Hara, Jaclyn A. Iera, Stewart R. Durell, Daniel H. Appella posted to xf sm ppi p53 2009 by higueruelo on 2009-11-03 16:38:41 as
	Protein-protein interaction networks: how can a hub protein bind so many different partners? [My Copy] Trends in biochemical sciences (16 October 2009) by Chung-Jung J. Tsai, Buyong Ma, Ruth Nussinov posted to ppi hubs 2009 by higueruelo on 2009-11-03 16:29:59 as along with 1 person lymxz
	Atomic interactions and profile of small molecules disrupting protein-protein interfaces: the TIMBAL database. [My Copy] Chemical biology & drug design, Vol. 74, No. 5. (November 2009), pp. 457-467. by Alícia P. Higueruelo, Adrian Schreyer, G. Richard Bickerton, Will R. Pitt, Colin R. Groom, Tom L. Blundell posted to sm review ppi intimbal 2009 by higueruelo on 2009-10-14 14:35:53 as along with 1 person massivemayhem
	A dynamic target-based pharmacophoric model mapping the CD4 binding site on HIV-1 gp120 to identify new inhibitors of gp120-CD4 protein-protein interactions. [My Copy] Bioorganic & medicinal chemistry letters (13 September 2009) by Fabiana Caporuscio, Andrea Tafi, Emmanuel González, Fabrizio Manetti, José A. Esté, Maurizio Botta posted to xf sm ppi hiv1 cd4 2009 by higueruelo on 2009-10-02 12:38:08 as
	The interwinding nature of protein-protein interfaces and its implication for protein complex formation [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3108-3113. by Kei Yura, Steven Hayward posted to ppi interface disorder 2009 by higueruelo on 2009-10-02 12:33:32 as along with 4 people kshameer dfdong tprpip phoenixzxl
	Identification and Characterization of a Small Molecule Inhibitor of Fatty Acid Binding Proteins. [My Copy] Journal of medicinal chemistry (16 September 2009) by Ann V. Hertzel, Kristina Hellberg, Joseph M. Reynolds, et al.Andrew C. Kruse, Brittany E. Juhlmann, Anne J. Smith, Mark A. Sanders, Douglas H. Ohlendorf, Jill Suttles, David A. Bernlohr posted to xf sm ppi fattyacids 2009 by higueruelo on 2009-09-26 12:08:43 as
	Protein-Peptide Interactions Adopt the Same Structural Motifs as Monomeric Protein Folds [My Copy] Structure, Vol. 17, No. 8. (12 August 2009), pp. 1128-1136. by Peter Vanhee, Francois Stricher, Lies Baeten, et al.Erik Verschueren, Tom Lenaerts, Luis Serrano, Frederic Rousseau, Joost Schymkowitz posted to scissors ppi peptides folding 2009 by higueruelo on 2009-09-22 19:18:03 as
	Present and future challenges and limitations in protein-protein docking. [My Copy] Proteins (5 August 2009) by Carles Pons, Solène Grosdidier, Albert Solernou, Laura Pérez-Cano, Juan Fernández-Recio posted to ppi ppdocking 2009 by higueruelo on 2009-09-08 14:17:22 as
	Structural domain-domain interactions: Assessment and comparison with protein-protein interaction data to improve the interactome. [My Copy] Proteins, Vol. 9999, No. 9999. (5 August 2009), NA. by C. Prieto, J. De Las Rivas posted to ppi piccolo 2009 by higueruelo on 2009-09-08 14:16:32 as along with 2 people phoenixzxl zwang
	Knowledge-Based Virtual Screening: Application to the MDM4/p53 Protein-Protein Interaction. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 575 (2009), pp. 173-194. by Edgar Jacoby, Andreas Boettcher, Lorenz M. Mayr, et al.Nathan Brown, Jeremy L. Jenkins, Joerg Kallen, Caroline Engeloch, Ulrich Schopfer, Pascal Furet, Keiichi Masuya, Joanna Lisztwan posted to xf vs sm ppi p53 mdm4 2009 by higueruelo on 2009-09-08 14:07:53 as
	Inhibition of a viral enzyme by a small-molecule dimer disruptor [My Copy] Nat Chem Biol, Vol. 5, No. 9. (September 2009), pp. 640-646. by Tina Shahian, Gregory M. Lee, Ana Lazic, et al.Leggy A. Arnold, Priya Velusamy, Christina M. Roels, R. Kiplin Guy, Charles S. Craik posted to xf sm ppi 2009 by higueruelo on 2009-09-04 11:17:19 as
	Protease dimer formation disrupted [My Copy] Nat Chem Biol, Vol. 5, No. 9. (September 2009), pp. 607-608. by Jean Chmielewski posted to xf sm ppi comment 2009 by higueruelo on 2009-09-04 11:13:52 as
	Assessing the druggability of protein-protein interactions by a supervised machine-learning method [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (25 August 2009), 263. by Nobuyoshi Sugaya, Kazuyoshi Ikeda posted to xf sm ppi druggable 2009 by higueruelo on 2009-09-03 14:12:34 as along with 2 people iris_2001 phoenixzxl
	Computational design of affinity and specificity at protein–protein interfaces [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 4. (29 August 2009), pp. 458-463. by John Karanicolas, Brian Kuhlman posted to 2009 computational interface ppi scissors thermo by higueruelo on 2009-08-10 14:33:09 as along with 4 people bmduggan sobolevnrm VGreiff barry
	Interaction between Intrinsically Disordered Proteins Frequently Occurs in a Human Protein–Protein Interaction Network [My Copy] Journal of Molecular Biology, Vol. 392, No. 5. (09 October 2009), pp. 1253-1265. by Kana Shimizu, Hiroyuki Toh posted to 2009 disorder ppi by higueruelo on 2009-08-10 14:18:21 as along with 8 people and 1 group jjray bdessailly nzm ekotelnikova kiekyon tprpip cabbagesofdoom reyez Orengo Group Journal Picks
	Quantitative analysis of caspase-3 activation by fitting fluorescence emission spectra in living cells. [My Copy] Micron (Oxford, England : 1993) (23 July 2009) by Longxiang Wang, Tongsheng Chen, Junle Qu, Xunbin Wei posted to 2009 assays ppi by higueruelo on 2009-08-10 14:15:28 as
	Studying the salt dependence of the binding of sigma70 and sigma32 to core RNA polymerase using luminescence resonance energy transfer. [My Copy] PloS one, Vol. 4, No. 8. (2009) by Bryan T. Glaser, Veit Bergendahl, Larry C. Anthony, Brian Olson, Richard R. Burgess posted to 2009 assays ppi by higueruelo on 2009-08-10 14:14:56 as
	Structural and Biophysical Characterization of XIAP BIR3 G306E Mutant: Insights in Protein Dynamics and Application for Fragment-Based Drug Design. [My Copy] Chemical biology & drug design (29 July 2009) by Cathy D. Moore, Haihong Wu, Ben Bolanños, et al.Simon Bergqvist, Alexei Brooun, Tom Pauly, Dawn Nowlin posted to 2009 flexibility fragments mutant-design ppi sm xf by higueruelo on 2009-08-10 14:12:39 as
	The isolation, total synthesis and structure elucidation of chlorofusin, a natural product inhibitor of the p53-mDM2 protein-protein interaction. [My Copy] Natural product reports, Vol. 26, No. 4. (April 2009), pp. 465-477. by Ryan C. Clark, Sang Yeul Y. Lee, Mark Searcey, Dale L. Boger posted to 2009 mdm2 np p53 ppi xf by higueruelo on 2009-08-03 15:57:31 as
	Novel In Vitro Protein Fragment Complementation Assay Applicable to High-Throughput Screening in a 1536-Well Format. [My Copy] Journal of biomolecular screening : the official journal of the Society for Biomolecular Screening (29 July 2009) by Junko Hashimoto, Taku Watanabe, Tatsuya Seki, et al.Satoshi Karasawa, Miho Izumikawa, Tomoe Seki, Shun-Ichiro I. Iemura, Tohru Natsume, Nobuo Nomura, Naoki Goshima, Atsushi Miyawaki, Motoki Takagi, Kazuo Shin-Ya posted to 2009 assays pac1 pac3 ppi sm xf by higueruelo on 2009-08-03 15:56:24 as
	In silico-in vitro screening of protein-protein interactions: towards the next generation of therapeutics. [My Copy] Current pharmaceutical biotechnology, Vol. 9, No. 2. (April 2008), pp. 103-122. by B. O. Villoutreix, K. Bastard, O. Sperandio, et al.R. Fahraeus, J. L. Poyet, F. Calvo, B. Déprez, M. A. Miteva posted to 2009 computational druggable interface ppi sm by higueruelo on 2009-07-29 14:54:32 as along with 1 person flbarroso
	Small Molecule Chloropyramine Hydrochloride (C4) Targets the Binding Site of Focal Adhesion Kinase and Vascular Endothelial Growth Factor Receptor 3 and Suppresses Breast Cancer Growth in Vivo [My Copy] Journal of Medicinal Chemistry, Vol. 0, No. 0. (0000) by Elena V. Kurenova, Darell L. Hunt, Dihua He, Andrew T. Magis, David A. Ostrov, William G. Cance posted to 2009 bromodomain fak ppi sm vegfr-3 xf by higueruelo on 2009-07-29 14:50:09 as
	Energy based approach for understanding the recognition mechanism in protein-protein complexes. [My Copy] Molecular bioSystems (7 July 2009) by Michael M. Gromiha, Kiyonobu Yokota, Kazuhiko Fukui posted to 2009 hotspots interface ppi by higueruelo on 2009-07-29 14:44:53 as
	Hierarchical plasticity from pair distance fluctuations [My Copy] Physical Biology, Vol. 6, No. 3. (September 2009), 036017. by S. A. Menor, Adam M. Graff, M. F. Thorpe posted to 2009 complex flexibility ppi by higueruelo on 2009-07-29 14:32:48 as along with 1 person sobolevnrm
	Targeting rho GTPases by peptidic structures. [My Copy] Current pharmaceutical design, Vol. 15, No. 21. (2009), pp. 2481-2487. by F. Marchioni, Y. Zheng posted to 2009 gtpases peptidomimetics ppi rho by higueruelo on 2009-07-29 14:29:07 as
	Organic dyes as small molecule protein-protein interaction inhibitors for the CD40-CD154 costimulatory interaction. [My Copy] Journal of molecular recognition : JMR (20 July 2009) by Peter Buchwald, Emilio Margolles-Clark, Norma S. Kenyon, Camillo Ricordi posted to 2009 cd154 cd40 ppi xf xm by higueruelo on 2009-07-29 14:24:26 as
	Probing hot spots on protein-protein interfaces with all-atom free-energy simulation. [My Copy] The Journal of chemical physics, Vol. 131, No. 3. (21 July 2009) by I. Meliciani, K. Klenin, T. Strunk, K. Schmitz, W. Wenzel posted to 2009 alascanning computational hotspots ppi by higueruelo on 2009-07-29 14:02:51 as
	Physicochemical principles that regulate the competition between functional and dysfunctional association of proteins. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 25. (23 June 2009), pp. 10159-10164. by S. Pechmann, E. D. Levy, G. G. Tartaglia, M. Vendruscolo posted to 2009 buried-surface interface ppi by higueruelo on 2009-07-06 18:00:08 as
	Sequence patches on MAPK surfaces define protein-protein interactions. [My Copy] Genome biology, Vol. 10, No. 6. (5 June 2009) by Gary L. Johnson, Shawn M. Gomez posted to 2009 interface ppi by higueruelo on 2009-07-06 17:58:26 as along with 1 person carlk
	Apogossypol derivatives as pan-active inhibitors of antiapoptotic B-cell lymphoma/leukemia-2 (Bcl-2) family proteins. [My Copy] Journal of medicinal chemistry, Vol. 52, No. 14. (23 July 2009), pp. 4511-4523. by Jun Wei, Shinichi Kitada, Michele F. Rega, et al.John L. Stebbins, Dayong Zhai, Jason Cellitti, Hongbin Yuan, Aras Emdadi, Russell Dahl, Ziming Zhang, Li Yang, John C. Reed, Maurizio Pellecchia posted to 2009 bcl-2 ppi sm xf by higueruelo on 2009-07-03 11:56:47 as along with 1 person emiko
	Pharmacophore-Based Discovery of Small-Molecule Inhibitors of Protein-Protein Interactions between HIV-1 Integrase and Cellular Cofactor LEDGF/p75. [My Copy] ChemMedChem (29 June 2009) by Laura De Luca, Maria Letizia L. Barreca, Stefania Ferro, et al.Frauke Christ, Nunzio Iraci, Rosaria Gitto, Anna Maria M. Monforte, Zeger Debyser, Alba Chimirri posted to xf sm ppi p75 ledgf hiv1 docking 2009 by higueruelo on 2009-07-03 11:50:54 as
	The analysis of the drug-targets based on the topological properties in the human protein-protein interaction network. [My Copy] Journal of drug targeting (16 June 2009) by Mingzhu Zhu, Lei Gao, Xia Li, et al.Zhicheng Liu, Chun Xu, Yuqing Yan, Erin Walker, Wei Jiang, Bin Su, Xiujie Chen, Hui Lin posted to 2009 druggable interface ppi by higueruelo on 2009-06-29 14:14:11 as
	Polyplexed Flow Cytometry Protein Interaction Assay: A Novel High-Throughput Screening Paradigm for RGS Protein Inhibitors. [My Copy] Journal of biomolecular screening : the official journal of the Society for Biomolecular Screening (16 June 2009) by David L. Roman, Shodai Ota, Richard R. Neubig posted to 2009 ppi rgs sm xf by higueruelo on 2009-06-29 14:13:05 as
	Rapid and Efficient Hydrophilicity Tuning of p53/mdm2 Antagonists. [My Copy] Journal of combinatorial chemistry (23 June 2009) by Stuti Srivastava, Barbara Beck, Wei Wang, Anna Czarna, Tad A. Holak, Alexander Dömling posted to 2009 mdm2 ppi sm xf by higueruelo on 2009-06-29 14:11:50 as
	Recent Advances in Validating MDM2 as a Cancer Target. [My Copy] Anti-cancer agents in medicinal chemistry (1 September 2009) by Elizabeth R. Rayburn, Scharri J. Ezell, Ruiwen Zhang posted to 2009 mdm2 ppi review by higueruelo on 2009-06-29 14:05:20 as
	The road less traveled: modulating signal transduction enzymes by inhibiting their protein–protein interactions [My Copy] Current Opinion in Chemical Biology, Vol. 13, No. 3. (22 June 2009), pp. 284-290. by Michelle R. Arkin, Adrian Whitty posted to 2009 ppi review sm by higueruelo on 2009-06-29 14:02:59 as along with 1 person richardbickerton
	Protein-protein interactions in receptor activation and intracellular signalling. [My Copy] Biological chemistry, Vol. 381, No. 9-10. (t 2000), pp. 955-959. by T. L. Blundell, D. F. Burke, D. Chirgadze, et al.V. Dhanaraj, M. Hyvönen, C. A. Innis, E. Parisini, L. Pellegrini, M. Sayed, B. L. Sibanda posted to 2000 buried-surface ppi by higueruelo on 2009-06-08 16:51:38 as
	Empirical estimation of the energetic contribution of individual interface residues in structures of protein–protein complexes [My Copy] Journal of Computer-Aided Molecular Design by Mainak Guharoy, Pinak Chakrabarti posted to 2009 hotspots ppi by higueruelo on 2009-06-08 16:48:19 as
	Small Molecules Bound to Unique Sites in the Target Protein Binding Cleft of Calcium-Bound S100B As Characterized by Nuclear Magnetic Resonance and X-ray Crystallography [My Copy] Biochemistry, Vol. 48, No. 26. (7 July 2009), pp. 6202-6212. by Thomas H. Charpentier, Paul T. Wilder, Melissa A. Liriano, et al.Kristen M. Varney, Shijun Zhong, Andrew Coop, Edwin Pozharski, Alexander D. Mackerell, Eric A. Toth, David J. Weber posted to 2009 flexibility p53 ppi s100b sm xf by higueruelo on 2009-06-03 10:12:35 as along with 1 person carlosjavierna
	Robust NMR Screening for Lead Compounds Using Tryptophan-Containing Proteins [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Michal Bista, Kaja Kowalska, Weronika Janczyk, Alexander Dömling, Tad A. Holak posted to 2009 assays nmr ppi by higueruelo on 2009-05-15 14:55:38 as along with 1 person ubcg08l
	Natural product inhibitors of protein–protein interactions mediated by Src-family SH2 domains [My Copy] Bioorganic & Medicinal Chemistry Letters (23 April 2009) by Bianca Sperl, Markus H. Seifert, Thorsten Berg posted to 2009 np ppi sm xf by higueruelo on 2009-05-15 14:53:43 as
	Multiple Independent Binding Sites for Small-Molecule Inhibitors on the Oncoprotein c-Myc. [My Copy] Journal of the American Chemical Society (11 May 2009) by Dalia I I. Hammoudeh, Ariele Viacava V. Follis, Edward V V. Prochownik, Steven J J. Metallo posted to 2009 disorder max myc ppi sm xf by higueruelo on 2009-05-15 14:50:38 as
	Protein-protein interaction databases: keeping up with growing interactomes. [My Copy] Human genomics, Vol. 3, No. 3. (April 2009), pp. 291-297. by Benjamin Lehne, Thomas Schlitt posted to 2009 db ppi by higueruelo on 2009-05-04 12:57:43 as along with 1 person daforerog
	Fast predictions of thermodynamics and kinetics of protein-protein recognition from structures: from molecular design to systems biology [My Copy] Mol. BioSyst., Vol. 5, No. 4. (2009), pp. 323-334. by Daniele Dell'orco posted to 2009 ppi systemsbio thermo by higueruelo on 2009-04-30 14:41:40 as along with 2 people ssgong flbarroso
	Databases of protein-protein interactions and their use in drug discovery. [My Copy] Current opinion in drug discovery & development, Vol. 12, No. 3. (May 2009), pp. 358-366. by G. Fuentes, J. Oyarzabal, A. M. Rojas posted to 2009 db ppi review sm xf by higueruelo on 2009-04-30 14:29:44 as along with 1 person liblab
	Accurate Prediction of Peptide Binding Sites on Protein Surfaces [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (27 March 2009), e1000335. by Evangelia Petsalaki, Alexander Stark, Eduardo García-Urdiales, Robert B. Russell posted to 2009 peptides pocket ppi by higueruelo on 2009-04-17 15:17:50 as along with 8 people and 1 group dfdong pablocarb nickolay phoenixzxl neils idoerg sobolevnrm paulschlesinger baker-group

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ppi	438
xf	262
sm	241
review	165
2008	164
2007	144
2009	142
flexibility	84
interface	78
2005	58
2006	57
peptidomimetics	51
disorder	41
intimbal	41
2004	35
druggable	34
thermo	33
allosteric	32
db	27
sm-prot	27
p53	26
hotspots	25
dynamics	24
peptides	24
pocket	24
mdm2	22
bcl2	21
fragments	21
struct-determination	21
2002	20
complex	20
hiv1	19
2003	17
method	17
ctmc7	16
nmr	16
ab	14
ppdocking	13
smac	13
2001	12
kinases	12
xiap	12
graph	11
shape	11
tpo	11
bclxl	10
nma	10
assays	8
docking	8
max	8
myc	8
sunesis	8
2000	7
abbott	7
alascanning	7
alphahelix	7
amyloid	7
buried-surface	7
folding	7
integrins	7
scissors	7
software	7
systemsbio	7
1998	6
props	6
1997	5
betaturn	5
e2	5
epo	5
hinge	5
hubs	5
np	5
roche	5
vs	5
wyeth	5
1999	4
cancer	4
e1	4
exp	4
ftsz	4
inos	4
le	4
morfs	4
pdb	4
phage	4
zipa	4
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asa	3
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gpcr	3
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il6	3
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mcl1	3
mutant-design	3
pdz	3
saxs	3
1992	2
1996	2
4ari	2
astrazeneca	2
bak	2
betacatenin	2
bipa	2
boehringer	2
bromodomain	2
cbf	2
cd4	2
chemicalspace	2
credo	2
cyclina	2
dimer	2
electrostatic	2
ercc1	2
fak	2
froda	2
gcsfr	2
hb	2
igg-fc	2
il2	2
il5	2
inteface	2
ledgf	2
moad	2
motion	2
networks	2
nnos	2
ph	2
pkc	2
prot-struct	2
raf1	2
rgs4	2
s100b	2
tcf	2
tethering	2
tnf	2
toxt	2
xpa	2
1976	1
1984	1
1988	1
1990	1
1993	1
2d	1
3did	1
aa-conserv	1
abe	1
abl	1
affinity	1
antibiotic	1
apl	1
apoptosis	1
atf	1
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bcl6	1
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biotin	1
bookreview	1
brct	1
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cc	1
cd154	1
cd40	1
chemicallinkers	1
clinical	1
cns	1
comment	1
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covalent	1
crm1	1
degradation	1
dehydrons	1
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dos	1
drugs	1
dyndom	1
ellipro	1
esx	1
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fields	1
fp	1
frag2lead	1
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hgh	1
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peptites	1
piccolo	1
probes	1
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sc	1
sh2	1
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sss	1
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syk	1
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tf	1
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vegfr-3	1
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water	1
x-hb	1
xm	1
xpf	1
yeast2hybrid	1

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