hmk's decoy_detection [13 articles] Export

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	On Design of Optimal Nonlinear Kernel Potential Function for Protein Folding and Protein Design [My Copy] by Changyu Hu, Xiang Li, Jie Liang posted to data decoy decoy_detection molecular_mechanics protein_design protein_structure by hmk on 2008-01-06 00:26:29 as
	Can a physics-based, all-atom potential find a protein's native structure among misfolded structures? I. Large scale AMBER benchmarking [My Copy] Journal of Computational Chemistry, Vol. 28, No. 12. (2007), pp. 2059-2066. by Liliana Wroblewska, Jeffrey Skolnick posted to alternatives data decoy decoy_detection free_energy molecular_dynamics by hmk on 2007-12-12 16:49:46 as along with 1 person pawelp
	Toward high-resolution prediction and design of transmembrane helical protein structures [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 40. (2 October 2007), pp. 15682-15687. by P. Barth, J. Schonbrun, D. Baker posted to data decoy_detection molecular_mechanics physics protein_structure by hmk on 2007-10-02 22:57:07 as along with 3 people zwang biehl Ema
	Recognition of errors in three-dimensional structures of proteins. [My Copy] Proteins, Vol. 17, No. 4. (December 1993), pp. 355-362. by M. J. Sippl posted to decoy_detection free_energy graphical_models by hmk on 2007-04-28 23:50:26 as along with 2 people medic0747 j3xucite
	Diverse, High-Quality Test Set for the Validation of Protein−Ligand Docking Performance [My Copy] Journal of Medicinal Chemistry, Vol. 50, No. 4. (1 February 2007), pp. 726-741. by Michael J. Hartshorn, Marcel L. Verdonk, Gianni Chessari, et al.Suzanne C. Brewerton, Wijnand T. M. Mooij, Paul N. Mortenson, Christopher W. Murray posted to data decoy_detection docking by hmk on 2007-03-30 17:55:36 as along with 9 people flbarroso GermanErlenkamp massivemayhem higueruelo BragilMassoud daevans ramensky superpyrin thanatos
	Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions [My Copy] Journal of Molecular Biology, Vol. 268, No. 1. (25 April 1997), pp. 209-225. by K. Simons posted to decoy_detection protein_structure by hmk on 2007-03-03 20:47:53 as along with 12 people and 2 groups chemrahul82 paddydu Diego_Prada reyez guxiyou ana jwm vavi wouterboomsma j3xucite mijam joule structural_bioinformatics Bioinformatics
	Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 34, No. 1. (1999), pp. 82-95. by Kim T. Simons, Ingo Ruczinski, Charles Kooperberg, Brian A. Fox, Chris Bystroff, David Baker posted to decoy_detection protein_structure by hmk on 2007-03-03 20:45:55 as along with 2 people paddydu bpb
	Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. [My Copy] J Mol Biol, Vol. 331, No. 1. (1 August 2003), pp. 281-299. by J. J. Gray, S. Moughon, C. Wang, et al.O. Schueler-Furman, B. Kuhlman, C. A. Rohl, D. Baker posted to data decoy_detection docking protein_structure by hmk on 2007-03-02 22:35:12 as along with 2 people oceanwind jwm
	Improved side-chain modeling for protein-protein docking. [My Copy] Protein Sci, Vol. 14, No. 5. (May 2005), pp. 1328-1339. by C. Wang, O. Schueler-Furman, D. Baker posted to decoy_detection docking protein_structure by hmk on 2007-03-02 22:33:34 as along with 11 people and 3 groups dgront csrocha barry aqeel jwm bicko yongzhao blackbart bluvsh1 selrac Evangelia structural_bioinformatics Bioinformatics TSRI_MGL
	Influence of protein structure databases on the predictive power of statistical pair potentials [My Copy] Proteins: Structure, Function, and Genetics, Vol. 31, No. 2. (1998), pp. 139-149. by Emiko Furuichi, Patrice Koehl posted to decoy_detection protein_structure by hmk on 2007-02-27 22:16:10 as
	Near-native structure refinement using in vacuo energy minimization [My Copy] PNAS, Vol. 104, No. 9. (27 February 2007), pp. 3177-3182. by Christopher M. Summa, Michael Levitt posted to decoy_detection protein_structure by hmk on 2007-02-27 18:54:39 as along with 2 people mijam thaliana
	Ab initio protein structure prediction of CASP III targets using ROSETTA [My Copy] Proteins: Structure, Function, and Genetics, Vol. 37, No. S3. (1999), pp. 171-176. by Kim T. Simons, Rich Bonneau, Ingo Ruczinski, David Baker posted to protein_structure decoy_detection by hmk on 2007-02-08 23:26:18 as
	A knowledge-based scoring function based on residue triplets for protein structure prediction [My Copy] Protein Engineering, Design and Selection, Vol. 19, No. 5. (May 2006), pp. 187-193. by Ngan, Shing-Chung, Inouye, T. Michael, Samudrala, Ram posted to protein_structure decoy_detection by hmk on 2007-01-22 23:43:06 as along with 1 person flbarroso

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protein_structure	58
free_energy	32
data	29
graphical_models	17
alternatives	16
decoy_detection	13
molecular_dynamics	12
protein_protein_interactions	11
molecular_mechanics	11
physics	10
inference	9
docking	8
side_chain_prediction	8
statistics	8
entropy	6
protein_design	6
protein_folding	6
decoy	4
protein_fold	4
dynamics	4
hivpr	3
hiv	3
binding	3
ensemble	3
drug_design	3
nmr	2
marginal_map	2
review	2
symbolic_encoding	2
conformational_entropy	2
industry	2
backbone	2
rotamer_library	2
systems_biology	2
analysis	2
continuous_model	1
crf	1
challenges	1
quantum_physics	1
library	1
protein_dna	1
math	1
probability	1
code	1
information_theory	1
hivprdata	1
advice	1
pharma	1
mcmc	1
drug_discovery	1
allostery	1
loops	1
ligand_binding	1
backrub	1
jaynes	1
genetics	1
sampling	1
camp	1

hmk's decoy_detection [13 articles] Export

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