hmk's graphical_models [17 articles] Export

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	Identification of direct residue contacts in protein–protein interaction by message passing [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 1. (6 January 2009), pp. 67-72. by Martin Weigt, Robert A. White, Hendrik Szurmant, James A. Hoch, Terence Hwa posted to graphical_models inference protein_protein_interactions protein_structure by hmk on 2009-01-07 06:08:31 as along with 6 people and 2 groups orr cactus haisent sobolevnrm sjcockell akraemer KeatingJClub baker-group
	Protein Side-Chain Placement Through MAP Estimation and Problem-Size Reduction, [My Copy] In 6th Workshop on Algorithms in Bioinformatics (WABI) 2006, pp. 219-230. posted to graphical_models inference protein_design protein_structure side_chain_prediction by hmk on 2008-07-20 15:54:09 as
	The atomic structure of protein-protein recognition sites [My Copy] Journal of Molecular Biology, Vol. 285, No. 5. (5 February 1999), pp. 2177-2198. by Loredana L. Conte, Cyrus Chothia, Joel Janin posted to data free_energy graphical_models protein_protein_interactions by hmk on 2008-03-15 22:31:01 as
	Coarse-Grained Biomolecular Simulation with REACH: Realistic Extension Algorithm via Covariance Hessian☆ [My Copy] Biophysical Journal, Vol. 93, No. 10. (15 November 2007), pp. 3460-3469. by K. Moritsugu, J. Smith posted to alternatives graphical_models molecular_dynamics protein_folding by hmk on 2007-12-09 03:09:17 as along with 5 people and 1 group edws Diego_Prada aqeel sobolevnrm choonpeng baker-group
	A consensus view of protein dynamics [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 3. (16 January 2007), pp. 796-801. by Manuel Rueda, Carles Ferrer-Costa, Tim Meyer, et al.Alberto Pérez, Jordi Camps, Adam Hospital, Josep L. Gelpí, Modesto Orozco posted to data dynamics graphical_models molecular_dynamics by hmk on 2007-12-09 02:49:20 as along with 14 people and 1 group Diego_Prada bmduggan lna dimka aqeel aswin rabio grahamc zwang biehl Ema phoenixzxl ras LamBras The BMM Dome
	Construction of effective free energy landscape from single-molecule time series [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19297-19302. by Akinori Baba, Tamiki Komatsuzaki posted to free_energy graphical_models protein_folding protein_structure by hmk on 2007-12-07 03:49:47 as along with 7 people and 1 group victorclaessen zwang cactus sobolevnrm Diego_Prada arnaudriegert hsekiguc baker-group
	Protein Free Energy Landscapes Remodeled by Ligand Binding [My Copy] Biophys. J., Vol. 93, No. 2. (15 July 2007), pp. 579-585. by Troy C. Messina, David S. Talaga posted to free_energy graphical_models protein_folding protein_structure by hmk on 2007-12-07 03:46:10 as
	Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction [My Copy] PNAS, Vol. 103, No. 26. (27 June 2006), pp. 9885-9890. by Payel Das, Mark Moll, Hernan Stamati, Lydia E. Kavraki, Cecilia Clementi posted to dynamics free_energy graphical_models protein_folding by hmk on 2007-12-06 00:10:32 as along with 2 people and 2 groups samjlord sobolevnrm moernerlab baker-group
	Sampling Realistic Protein Conformations Using Local Structural Bias. [My Copy] PLoS Comput Biol, Vol. 2, No. 9. (22 September 2006) by Thomas Hamelryck, John T T. Kent, Anders Krogh posted to free_energy graphical_models protein_fold protein_structure statistics by hmk on 2007-10-31 17:54:26 as along with 3 people xingwuliu wouterboomsma j3xucite
	Computational design of antibody-affinity improvement beyond in vivo maturation. [My Copy] Nat Biotechnol (23 September 2007) by Shaun M M. Lippow, K Dane D. Wittrup, Bruce Tidor posted to data free_energy graphical_models protein_design protein_fold protein_structure by hmk on 2007-10-31 14:06:33 as along with 4 people and 1 group Scis0000002 kirasato dfgreen zwang Chang group
	Clinical forecasting in drug development [My Copy] Nature Reviews Drug Discovery, Vol. 6, No. 2., pp. 107-108. by Asher D. Schachter, Marco F. Ramoni posted to graphical_models industry pharma by hmk on 2007-06-09 19:15:23 as
	Recognition of errors in three-dimensional structures of proteins. [My Copy] Proteins, Vol. 17, No. 4. (December 1993), pp. 355-362. by M. J. Sippl posted to decoy_detection free_energy graphical_models by hmk on 2007-04-28 23:50:26 as along with 2 people medic0747 j3xucite
	Design of a novel globular protein fold with atomic-level accuracy. [My Copy] Science (New York, N.Y.), Vol. 302, No. 5649. (21 November 2003), pp. 1364-1368. by Brian Kuhlman, Gautam Dantas, Gregory C. Ireton, Gabriele Varani, Barry L. Stoddard, David Baker posted to graphical_models molecular_mechanics physics protein_design protein_structure by hmk on 2007-03-14 01:23:38 as along with 10 people bmduggan kgutwin Diego_Prada onufriev apaydin dfgreen jwm heymiki kevinchannon ca3295
	Streptavidin Tetramerization and 2D Crystallization: A Mean-Field Approach [My Copy] Biophys. J., Vol. 80, No. 4. (1 April 2001), pp. 2004-2010. by T. Coussaert, A. R. Volkel, J. Noolandi, A. P. Gast posted to free_energy graphical_models inference protein_structure by hmk on 2007-03-09 00:01:52 as
	The Cluster Variation Method for Efficient Linkage Analysis on Extended Pedigrees [My Copy] BMC Bioinformatics, Vol. 7, No. Suppl 1. (2006) by Cornelis Albers, Martijn Leisink, Hilbert Kappen posted to free_energy graphical_models by hmk on 2007-03-07 02:40:46 as
	Meanfield approach to the thermodynamics of protein-solvent systems with application to p53. [My Copy] Biophysics, Vol. 80 (March 2001), pp. 1524-1537. by Volkel R. Armin, Noolandi Jaan posted to protein_structure graphical_models by hmk on 2007-01-29 19:24:03 as
	Graphical models of residue coupling in protein families [My Copy] In BIOKDD '05: Proceedings of the 5th international workshop on Bioinformatics (2005), pp. 12-20. by John Thomas, Naren Ramakrishnan, Chris Bailey-Kellogg posted to protein_structure graphical_models by hmk on 2007-01-26 16:03:43 as along with 1 group Dartmouth Computer Science

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protein_structure	58
free_energy	32
data	29
graphical_models	17
alternatives	16
decoy_detection	13
molecular_dynamics	12
protein_protein_interactions	11
molecular_mechanics	11
physics	10
inference	9
docking	8
side_chain_prediction	8
statistics	8
entropy	6
protein_design	6
protein_folding	6
decoy	4
protein_fold	4
dynamics	4
hivpr	3
hiv	3
binding	3
ensemble	3
drug_design	3
nmr	2
marginal_map	2
review	2
symbolic_encoding	2
conformational_entropy	2
industry	2
backbone	2
rotamer_library	2
systems_biology	2
analysis	2
continuous_model	1
crf	1
challenges	1
quantum_physics	1
library	1
protein_dna	1
math	1
probability	1
code	1
information_theory	1
hivprdata	1
advice	1
pharma	1
mcmc	1
drug_discovery	1
allostery	1
loops	1
ligand_binding	1
backrub	1
jaynes	1
genetics	1
sampling	1
camp	1

hmk's graphical_models [17 articles] Export

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