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	Doing sequence analysis with your printer [My Copy] Comput. Appl. Biosci., Vol. 9, No. 4. (1 August 1993), pp. 421-426. by D. B. Searls posted to software curiosity bioinformatics 1993 by hpaces on 2009-11-12 06:44:35 as
	Managing and Analyzing Next-Generation Sequence Data [My Copy] PLoS computational biology In PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000369. posted to ht_sequencing bioinformatics 2009 by hpaces on 2009-11-08 09:38:24 as along with 47 people and 4 groups kevinemamy heliopais jforment jfr burak idoerg Geknitics cthachuk hzoltan chvlyl sameersoi gdv GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz michaelbarton dswan reyez kshameer TRHvidsten djkt ppgardne Bioinformatics Core Service BergmanLab Bioinformatics Journal picks
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by M. Pop, S. Salzberg posted to review ht_sequencing bioinformatics 2008 by hpaces on 2009-11-08 09:37:37 as along with 36 people Jporci cthachuk hzoltan heliopais imaginatio operon daforerog n00c ptrobajo orzenil APRegier katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	EagleView: A genome assembly viewer for next-generation sequencing technologies [My Copy] Genome Research, Vol. 18, No. 9. (11 September 2008), pp. 1538-1543. by Weichun Huang, Gabor Marth posted to visualisation software bioinformatics assembly 454 2008 by hpaces on 2009-09-18 12:56:47 as along with 15 people Thaverkamp imaginatio darian n00c xingxu natstreet abizar druvus balicea bcondon fpattyn APRegier Neeperando GustavoLacerda guhjy
	SOAP: short oligonucleotide alignment program [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 713-714. by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang posted to 2008 alignment assembly bioinformatics ht_sequencing software solexa by hpaces on 2009-04-17 11:08:03 as along with 27 people humburg cthachuk hzoltan antonkratz adijr jmanning2k pachorip jmcq jsatkosk jasontsai n00c skembel maren natstreet druvus orzenil pengchy umit guhjy ghattem GustavoLacerda niallhaslam mdimon caseybrown urgi bozdagd waszak
	Identifying protein-coding genes in genomic sequences [My Copy] Genome Biology, Vol. 10, No. 1. (30 January 2009), 201. by Jennifer, Roderic Guigó posted to 2009 bioinformatics gene_organisation prediction by hpaces on 2009-04-16 15:13:32 as along with 14 people and 2 groups jfr antonkratz robfsouza nlapalu renatomilani ArtemPankin guhjy michaelbarton idoerg jm12 pawelszczesny natstreet barriot druvus Bioinformatics Khavkin's lab
	RAMI, a tool for identification and characterization of phylogenetic clusters in microbial communities [My Copy] Bioinformatics (17 February 2009), btp051. by Thomas Pommier, Bjorn Canback, Per Lundberg, Ake Hagstrom, Anders Tunlid posted to 2009 bioinformatics metagenomics phylogeny software by hpaces on 2009-04-16 11:07:17 as along with 4 people and 2 groups elbrodie skembel sriesenfeld djkt phylocom iSEEM
	Methods for comparative metagenomics. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1, No. Suppl 1. (2009) by Daniel Huson, Daniel Richter, Suparna Mitra, Alexander Auch, Stephan Schuster posted to 2009 bioinformatics metagenomics method software by hpaces on 2009-04-16 11:01:54 as along with 6 people and 1 group taylor73 idoerg Thaverkamp druvus jmeppley jonathaneisen iSEEM
	Gene cluster statistics with gene families [My Copy] Mol Biol Evol (15 January 2009), msp002. by Narayanan Raghupathy, Dannie Durand posted to 2009 bioinformatics comparative_genomics evolution genome_organisation by hpaces on 2009-04-16 11:00:29 as along with 3 people djkt bpcusack druvus
	A Bioinformatician's Guide to Metagenomics [My Copy] Microbiol. Mol. Biol. Rev., Vol. 72, No. 4. (1 December 2008), pp. 557-578. by Victor Kunin, Alex Copeland, Alla Lapidus, Konstantinos Mavromatis, Philip Hugenholtz posted to 2008 bioinformatics metagenomics review by hpaces on 2009-04-16 10:57:53 as along with 40 people and 8 groups ajsferreira CorinYeats sconlan jasontsai halinat hwright michaelbarton taylor73 esyoun bluto idoerg skembel inquil EKotlarska anphony stajich sharpton vrich vaulot adgrativol jakechen balicea dbk GustavoLacerda guhjy hessec fhalbrit Zephyrus anazhu dswan sjcockell Borelli druvus azazello kinestetika jmeppley neils Katje allysonlister skato_toyaku Orengo Group Journal Picks Shared Literature Resource of the Microbial Fitness Group - MPI Bremen iSEEM Papers recommended by the Roscoff Plankton Group Microbial-Ecology Translational Bioinformatics Roswell Cancer Crosstalk microbiology_nijmegen
	Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (10 April 2009), e1000352. by James R. White, Niranjan Nagarajan, Mihai Pop posted to 2009 algorithm bioinformatics computational metagenomics by hpaces on 2009-04-16 10:51:41 as along with 12 people and 2 groups jfr CorinYeats dayjm taylor73 Thaverkamp sriesenfeld APRegier dswan druvus djkt skembel idoerg Orengo Group Journal Picks iSEEM
	An introduction to hidden Markov models. [My Copy] Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Appendix 3 (June 2007) by Schuster B. Böckler, A. Bateman posted to 2007 algorithm bioinformatics hmm lectures by hpaces on 2009-04-05 16:21:17 as along with 2 people flips svozil
	Hidden Markov Models, grammars, and biology: a tutorial. [My Copy] J Bioinform Comput Biol, Vol. 3, No. 2. (April 2005), pp. 491-526. by S. Mukherjee, S. Mitra posted to 2007 bioinformatics hmm lectures review by hpaces on 2009-04-05 15:32:57 as along with 4 people flips svozil Ayest berthoums
	What is a hidden Markov model? [My Copy] Nature Biotechnology, Vol. 22, No. 10. (01 October 2004), pp. 1315-1316. by S. R. Eddy posted to 2004 bioinformatics hmm lectures review by hpaces on 2009-04-05 15:14:42 as along with 17 people and 1 group n00c darian dfdong orzenil Yanno flips mjoach svozil skumagai gulkur brian aprasad indigoviolet timflutre berthoums mailund dullhunk EisenLab
	Viral population estimation using pyrosequencing. [My Copy] PLoS computational biology, Vol. 4, No. 4. (9 April 2008), e1000074. by N. Eriksson, L. Pachter, Y. Mitsuya, et al.S. Y. Rhee, C. Wang, B. Gharizadeh, M. Ronaghi, R. W. Shafer, N. Beerenwinkel posted to 2008 454 bioinformatics ht_sequencing metagenomics virus by hpaces on 2009-04-05 10:29:25 as along with 6 people and 2 groups nfparrish ghattem jonilaserson jmeppley bmaust djkt SIMR bioinformatics iSEEM
	Hawkeye: an interactive visual analytics tool for genome assemblies [My Copy] Genome Biology, Vol. 8, No. 3. (09 March 2007), R34. by Michael C. Schatz, Adam M. Phillippy, Ben Shneiderman, Steven L. Salzberg posted to 2007 annotation assembly bioinformatics comparative_genomics genome_organisation visualisation by hpaces on 2009-04-05 10:23:48 as along with 11 people and 2 groups darian n00c joule Thaverkamp orzenil GustavoLacerda natstreet druvus stajich azazello Neeperando Mycology gatech-compgenomics
	Pyrobayes: an improved base caller for SNP discovery in pyrosequences [My Copy] Nat Meth, Vol. 5, No. 2. (13 January 2008), pp. 179-181. by Aaron R. Quinlan, Donald A. Stewart, Michael P. Strömberg, Gábor T. Marth posted to 2008 454 algorithm bayesian bioinformatics software by hpaces on 2009-04-05 10:21:42 as along with 9 people and 1 group n00c jonilaserson natstreet druvus orzenil jmeppley azazello guhjy mariakmejia gatech-compgenomics
	Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements [My Copy] Genome Research, Vol. 14, No. 7. (July 2004), pp. 1394-1403. by A. C. Darling, B. Mau, F. R. Blattner, N. T. Perna posted to 2004 alignment bioinformatics comparative_genomics multiple_alignment software by hpaces on 2009-04-05 10:14:40 as along with 13 people and 2 groups rneches foxpowa APRegier ArtemPankin Neeperando bcondon semrich operon catmat AaronDarling azazello mariakmejia druvus Khavkin's lab gatech-compgenomics
	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research In Genome Research, Vol. 18, No. 5. (18 March 2008), pp. 821-829. by Daniel Zerbino, Ewan Birney posted to 2008 algorithm alignment assembly bioinformatics computational ht_sequencing by hpaces on 2009-03-24 15:55:33 as along with 43 people and 3 groups humburg ajsferreira vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn druvus natstreet nmohelli stajich farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	A universal operon predictor for prokaryotic genomes. [My Copy] Journal of bioinformatics and computational biology, Vol. 7, No. 1. (February 2009), pp. 19-38. by G. Li, D. Che, Y. Xu posted to 2009 algorithm bioinformatics prediction software by hpaces on 2009-03-02 19:36:16 as
	Phylogenetic and functional assessment of orthologs inference projects and methods. [My Copy] PLoS computational biology, Vol. 5, No. 1. (16 January 2009), e1000262. by Adrian M. Altenhoff, Christophe Dessimoz posted to 2009 bioinformatics comparative_genomics ortholog review by hpaces on 2009-02-18 15:09:37 as along with 10 people and 1 group avilella AaronDarling skembel isimpson natstreet alpae kshameer djkt bpcusack druvus Ensembl Compara citations
	Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000176. by Marcel E. Dinger, Ken C. Pang, Tim R. Mercer, John S. Mattick posted to 2008 bioinformatics function genome_organisation regulation review by hpaces on 2008-12-12 06:57:03 as along with 10 people and 1 group rschulz Zephyrus GustavoLacerda reyez dswan agustinarce gfliustu cmn eskay GeeSharpMinor Roswell Cancer Crosstalk
	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome research, Vol. 19, No. 2. (3 December 2009), pp. 336-346. by Mark, Dumitru Brinza, Pavel A. A. Pevzner posted to 2008 454 algorithm assembly bioinformatics software by hpaces on 2008-12-12 06:53:06 as along with 18 people and 1 group darian n00c carlk APRegier jandot jonilaserson natstreet dakelley jessopher orzenil AaronDarling sphsmith jasontsai nmohelli jbhiatt druvus GustavoLacerda stajich Mycology
	Structural Relationships between Highly Conserved Elements and Genes in Vertebrate Genomes [My Copy] PLoS ONE, Vol. 3, No. 11. (14 November 2008), e3727. by Hong Sun, Geir Skogerbo, Zhen Wang, Wei Liu, Yixue Li posted to 2008 bioinformatics comparative_genomics vertebrate by hpaces on 2008-11-21 10:15:05 as along with 4 people and 1 group sujaikumar bpcusack Ema sameetmehta Bioinformatics
	Phylogenetic classification of short environmental DNA fragments [My Copy] Nucl. Acids Res., Vol. 36, No. 7. (19 April 2008), pp. gkn038-2239. by Lutz Krause, Naryttza N. Diaz, Alexander Goesmann, et al.Scott Kelley, Tim W. Nattkemper, Forest Rohwer, Robert A. Edwards, Jens Stoye posted to 2008 454 bacteria bioinformatics metagenomics by hpaces on 2008-10-10 15:47:18 as along with 7 people esyoun ematsen dakelley idoerg sriesenfeld skembel vrich
	MEGAN analysis of metagenomic data [My Copy] Genome Research, Vol. 17, No. 3. (06 March 2007), pp. 377-386. by D. H. Huson, A. F. Auch, J. Qi, S. C. Schuster posted to 2007 bioinformatics ht_sequencing metagenomics phylogeny software by hpaces on 2008-07-29 16:07:03 as along with 15 people and 2 groups ajsferreira taylor73 esyoun dakelley Thaverkamp druvus idoerg guhjy treangen jmeppley azazello wenhan carpi alexl mjetten anammox microbiology_nijmegen
	Understanding the recent evolution of the human genome: insights from human-chimpanzee genome comparisons [My Copy] Human Mutation, Vol. 28, No. 2. (2007), pp. 99-130. by Hildegard K. Sawatzki, David N. Cooper posted to 2006 bioinformatics chimp comparative_genomics human review by hpaces on 2008-07-09 10:58:00 as along with 6 people and 2 groups bpb balicea dchughes sebastien_vigneau jpdemuth pradiptaray G4ID Genetics-of-Gambling
	KEGG for linking genomes to life and the environment [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_1. (11 December 2008), pp. D480-484. by Minoru Kanehisa, Michihiro Araki, Susumu Goto, et al.Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi posted to 2008 bioinformatics database by hpaces on 2008-05-19 10:00:42 as along with 32 people dadiamah ajsferreira Thaverkamp sjcockell JeremyZucker jperkins vkwn pablocarb VGreiff mqbphcw3 karinlag robert85 peterli jjray schwartzjmc ubcg08l allysonlister YukaH Cortel coela daforerog reyez namunet irenas guhjy raiyar barriot renatomilani shung massivemayhem natstreet TheresaNiederberger
	Vir-Mir db: prediction of viral microRNA candidate hairpins. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (January 2008) by S. C. Li, C. K. Shiau, W. C. Lin posted to 2008 bioinformatics database mirna by hpaces on 2008-05-11 16:11:41 as
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N. Yamada, Peter Tsang, Tera L. Newman, Eray Tüzün, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. Mccarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted to 2008 bioinformatics horizontal_transfer human by hpaces on 2008-05-11 12:45:22 as along with 35 people and 2 groups hzoltan n00c daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr Ema bpb dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 GeneGo Koch_Lab
	Poor prognosis in carcinoma is associated with a gene expression signature of aberrant PTEN tumor suppressor pathway activity. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 18. (1 May 2007), pp. 7564-7569. by L. H. Saal, P. Johansson, K. Holm, et al.Gruvberger S. K. Saal, Q. B. She, M. Maurer, S. Koujak, A. A. Ferrando, P. Malmström, L. Memeo, J. Isola, P. O. Bendahl, N. Rosen, H. Hibshoosh, M. Ringnér, A. Borg, R. Parsons posted to 2007 array bioinformatics cancer gene_expression_array regulation by hpaces on 2008-05-02 09:59:31 as along with 2 people zufar jfr
	What is principal component analysis? [My Copy] Nature biotechnology, Vol. 26, No. 3. (01 March 2008), pp. 303-304. by Markus Ringnér posted to 2008 algorithm bioinformatics review statistics by hpaces on 2008-05-02 07:29:10 as along with 71 people and 3 groups frohike krapnik singhsh Jporci tnhh ruvido ucbcjbm daforerog Diego_Prada abellogin nguizard thegoose2 arsyed Zephyrus flips svozil VGreiff kaniko ssgong Yanno guhjy operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu rsantana sobolevnrm fryanpan kengg rvosa dekay23 adacier waghsk rchauhan pavanghatty kristgy jfr bibay2004 xingxu quianominorleo craigwilson06 ashko markusd dayjm dimka i-stevenson chrissp100 tharris ale mjoach HugoMarcelo jdiezperezj rrbarb Nici baker-group FAB-lab Bioinformatics
	Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts [My Copy] BMC Bioinformatics, Vol. 8 (26 June 2007), 221. by Joern Toedling, Oleg Sklyar, Wolfgang Huber posted to 2007 algorithm array bioinformatics software by hpaces on 2008-01-31 10:33:54 as along with 8 people TheresaNiederberger rschulz guhjy jfr ghattem caseybrown inesdesantiago bryankr
	Automated generation of heuristics for biological sequence comparison [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 31. by Guy Slater, Ewan Birney posted to 2005 algorithm alignment bioinformatics software by hpaces on 2008-01-29 10:43:34 as along with 12 people and 1 group n00c rshe darian mhamada orzenil jmcq druvus waszak indigoviolet massivemayhem wenhan marti EisenLab
	Chaos game representation for comparison of whole genomes [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006) by Jijoy Joseph, Roschen Sasikumar posted to 2006 bioinformatics evolution genomics by hpaces on 2008-01-22 08:25:32 as along with 2 people operon skhadar
	The ENCODE (ENCyclopedia Of DNA Elements) Project. [My Copy] Science (New York, N.Y.), Vol. 306, No. 5696. (22 October 2004), pp. 636-640. by E. Encode posted to 2007 bioinformatics genomics human by hpaces on 2007-12-20 13:23:33 as along with 13 people and 1 group timhubbard polivares ilyashl raistrick setar balajis skhadar qfwills djkt frohike JeffR100 olympos siebert Bioinformatics
	Identification of disulfide reductases in Campylobacterales: a bioinformatics investigation. [My Copy] Antonie Van Leeuwenhoek, Vol. 92, No. 4. (November 2007), pp. 429-441. by N. O. Kaakoush, T. Sterzenbach, W. G. Miller, S. Suerbaum, G. L. Mendz posted to 2007 bacteria bioinformatics comparative_genomics genome by hpaces on 2007-12-11 09:02:55 as
	Recent Evolutions of Multiple Sequence Alignment Algorithms [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123. by Cédric Notredame posted to 2007 algorithm bioinformatics multiple_alignment review by hpaces on 2007-12-10 20:03:19 as along with 9 people and 1 group BioNica treangen natstreet druvus giovenko agustinarce skhadar sobolevnrm mingzhi baker-group
	Using Likelihood-Free Inference to Compare Evolutionary Dynamics of the Protein Networks of H. pylori and P. falciparum [My Copy] PLoS Computational Biology In PLoS Comput Biol, Vol. 3, No. 11. (30 November 2007), e230. by Oliver Ratmann, Ole Jørgensen, Trevor Hinkley, Michael Stumpf, Sylvia Richardson, Carsten Wiuf posted to 2007 bacteria bioinformatics evolution networks protein by hpaces on 2007-12-10 19:41:09 as along with 6 people lawraga TheresaNiederberger zwang xingxu Ema tresch
	MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216. by Saurabh Sinha, Xin He posted to 2007 algorithm alignment bioinformatics hmm regulation software by hpaces on 2007-12-10 19:39:22 as along with 7 people and 2 groups ana dpollard cjeans zwang maximilianh Ema uwe EisenLab cis-regulatory-evolution
	Detecting coevolution in and among protein domains. [My Copy] PLoS computational biology, Vol. 3, No. 11. (1 November 2007), e211. by Chen H. Yeang, David Haussler posted to 2007 algorithm bioinformatics coevolution evolution protein by hpaces on 2007-12-10 18:37:49 as along with 13 people and 1 group dfdong martainn balicea skhadar zwang sobolevnrm niallhaslam mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray baker-group
	A forest-based approach to identifying gene and gene gene interactions [My Copy] Proceedings of the National Academy of Sciences (28 November 2007), 0709868104. by Xiang Chen, Ching T. Liu, Meizhuo Zhang, Heping Zhang posted to 2007 bioinformatics gene_regulation by hpaces on 2007-12-09 09:08:20 as along with 5 people guhjy balicea cjeans zwang xingxu
	Predicting protein function from sequence and structure [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 12. (01 December 2007), pp. 995-1005. by David Lee, Oliver Redfern, Christine Orengo posted to 2007 bioinformatics function prediction protein review structure by hpaces on 2007-12-09 09:05:31 as along with 13 people and 1 group operon michaelbarton smpraveena MarcoAlvarez skhadar neils cjeans zwang Evangelia Ema renatomilani kluck janasont MuraLab
	Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 1. (1 January 2007), pp. 127-128. by Letunic, Ivica, Bork, Peer posted to 2006 bacteria bioinformatics phylogeny software by hpaces on 2007-12-09 08:35:14 as along with 6 people and 2 groups pablocarb aramata guhjy marcius skhadar gjuggler BioinfoCIPF SGU-CIPF
	EVOLUTION: Passages Found Through Labyrinth of Bacterial Evolution [My Copy] Science, Vol. 301, No. 5634. (8 August 2003), pp. 745a-746. by Elizabeth Pennisi posted to 2003 bacteria bioinformatics evolution genome horizontal_transfer by hpaces on 2007-12-09 08:02:02 as
	An efficient algorithm for large-scale detection of protein families [My Copy] Nucl. Acids Res., Vol. 30, No. 7. (1 April 2002), pp. 1575-1584. by A. J. Enright, S. Van Dongen, C. A. Ouzounis posted to 2002 algorithm array bioinformatics clustering computational software by hpaces on 2007-11-28 07:13:01 as along with 22 people and 2 groups jperkins calderonv nedwards dakelley druvus treangen carlk cgaugain johanviklund chad_davis camster operon knaseanka indigoviolet skhadar nirfriedman dgront entropy gcalda GustavoLacerda RebeccaHamer Borelli dbk-lab EisenLab
	Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 219-232. by Alexander Stark, Michael F. Lin, Pouya Kheradpour, et al.Jakob S. Pedersen, Leopold Parts, Joseph W. Carlson, Madeline A. Crosby, Matthew D. Rasmussen, Sushmita Roy, Ameya N. Deoras, Graham J. Ruby, Julius Brennecke, Harvard F. Curators, Berkeley, Emily Hodges, Angie S. Hinrichs, Anat Caspi, Benedict Paten, Seung W. Park, Mira V. Han, Morgan L. Maeder, Benjamin J. Polansky, Bryanne E. Robson, Stein Aerts, Jacques van Helden, Bassem Hassan, Donald G. Gilbert, Deborah A. Eastman, Michael Rice, Michael Weir, Matthew W. Hahn, Yongkyu Park, Colin N. Dewey, Lior Pachter, James W. Kent, David Haussler, Eric C. Lai, David P. Bartel, Gregory J. Hannon, Thomas C. Kaufman, Michael B. Eisen, Andrew G. Clark, Douglas Smith, Susan E. Celniker, William M. Gelbart, Manolis Kellis posted to 2007 bioinformatics comparative_genomics drosophila by hpaces on 2007-11-20 18:02:35 as along with 21 people and 3 groups heliopais anphony kieran101 Neeperando pradiptaray rouault druvus operon tmmurali djkt timflutre stajich lp2 cabbagezs nklee roys caseybrown gjuggler shuzhens PetrovLab cisevol microRNA Mycology Drosophila-Genetics-Genomics-2008
	Quantification of ortholog losses in insects and vertebrates. [My Copy] Genome Biology, Vol. 8 (16 November 2007), R242. by Stefan Wyder, Evgenia V. Kriventseva, Reinhard Schroder, Tatsuhiko Kadowaki, Evgeny M. Zdobnov posted to 2007 bioinformatics comparative_genomics evolution insect ortholog vertebrate by hpaces on 2007-11-20 08:02:22 as along with 4 people and 1 group grahamc cjeans hlapp svdate Bioinformatics
	WAViS server for handling, visualization and presentation of multiple alignments of nucleotide or amino acids sequences. [My Copy] Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004) by R. Zika, J. Paces, A. Pavlícek, V. Paces posted to 2004 algorithm alignment bioinformatics my phylogeny software by hpaces on 2007-11-13 16:09:23 as
	Representing GC variation along eukaryotic chromosomes [My Copy] Gene, Vol. 333 (26 May 2004), pp. 135-141. by Jan Paces, Radek Zika, Vaclav Paces, Adam Pavlicek, Oliver Clay, Giorgio Bernardi posted to 2004 algorithm bioinformatics eukaryotic genomics my software by hpaces on 2007-11-13 16:07:02 as

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2007	72
bioinformatics	68
algorithm	35
2008	35
software	29
comparative_genomics	28
human	28
genome	27
review	25
evolution	22
ht_sequencing	21
bacteria	20
454	17
phylogeny	16
2006	16
genomics	16
metagenomics	16
2009	15
chimp	12
alignment	10
retroelement	10
assembly	9
annotation	8
2004	7
my	7
genome_organisation	7
computational	7
database	7
array	7
mirna	6
sequencing	6
networks	5
eukaryotic	5
clustering	5
multiple_alignment	5
hmm	5
solexa	5
gene_organisation	4
horizontal_transfer	4
protein	4
2002	4
prediction	4
endogenous_retrovirus	4
regulation	4
lectures	3
function	3
herv	3
method	2
virus	2
ortholog	2
structure	2
vertebrate	2
gene_expression_array	2
bayesian	2
ancient_dna	2
mammal	2
yeast	2
drosophila	2
curiosity	2
2005	2
primate	2
gene_regulation	2
visualisation	2
comment	2
synsytin	2
1997	2
cancer	1
gene_prediction	1
similarity	1
disease	1
line	1
chromatin	1
literature	1
insect	1
mouse	1
coevolution	1
2001	1
16s_rrna	1
statistics	1
protein_protein_interaction	1
nomenclature	1
nash	1
blast	1
2003	1
neandertal	1
plant	1
cat	1
ontology	1
marine	1
development	1
motif	1
genetic_algorithm	1
1996	1
1993	1

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