hplatero's bzip [71 articles] Export

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	Classification of human B-ZIP proteins based on dimerization properties. [My Copy] Mol Cell Biol, Vol. 22, No. 18. (September 2002), pp. 6321-6335. by C. Vinson, M. Myakishev, A. Acharya, A. A. Mir, J. R. Moll, M. Bonovich posted to bzip human by hplatero on 2009-01-21 05:21:00 as along with 3 people kgutwin cjeans gwenknight
	Identification of eukaryotic promoter regulatory elements using nonhomologous random recombination. [My Copy] Nucleic Acids Res (24 August 2007) by Jeffrey B B. Doyon, David R R. Liu posted to bzip hac1 by hplatero on 2008-10-21 18:12:28 as along with 1 person sebastien_vigneau
	Inferring Condition-Specific Modulation of Transcription Factor Activity in Yeast through Regulon-Based Analysis of Genomewide Expression [My Copy] PLoS ONE, Vol. 3, No. 9. (2008), e3112. by André Boorsma, Xiang-Jun Lu, Anna Zakrzewska, Frans M. Klis, Harmen J. Bussemaker posted to bzip hac1 by hplatero on 2008-10-20 19:19:02 as along with 3 people hge lusk roys
	ATF/CREB sites present in sub-telomeric regions of Saccharomyces cerevisiae chromosomes are part of promoters and act as UAS/URS of highly conserved COS genes. [My Copy] Journal of molecular biology, Vol. 319, No. 2. (31 May 2002), pp. 407-420. by I. Spode, D. Maiwald, C. P. Hollenberg, M. Suckow posted to aca1 aca2 bzip cos8 sko1 by hplatero on 2008-10-16 00:01:00 as
	An evolutionary proteomics approach identifies substrates of the cAMP-dependent protein kinase. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39. (27 September 2005), pp. 13933-13938. by Y. V. Budovskaya, J. S. Stephan, S. J. Deminoff, P. K. Herman posted to aca1 bzip cin5 cst6 by hplatero on 2008-10-15 23:08:40 as
	The yeast stress response [My Copy] http://www3.interscience.wiley.com/journal/118546409/home, Vol. 272, No. 11. (6 May 2005), pp. 2639-2647. by Claudina posted to bzip cad1 by hplatero on 2008-10-13 20:53:21 as
	Interactome Analysis of Yeast Glutathione Peroxidase 3 [My Copy] Journal of Microbiology and Biotechnology, Vol. 18, No. 8. (28 August 2008), pp. 1364-1367. by Phil Y. Lee posted to bzip yap1 by hplatero on 2008-10-07 19:52:26 as
	Yeast activator proteins and stress response: an overview1 [My Copy] FEBS Letters*, Vol. 567, No. 1. (June 2004), pp. 80-85. by C. Rodriguespousada posted to bzip cad1 by hplatero on 2008-10-06 23:14:53 as
	Aft1p and Aft2p Mediate Iron-responsive Gene Expression in Yeast through Related Promoter Elements [My Copy] J. Biol. Chem., Vol. 278, No. 30. (18 July 2003), pp. 27636-27643. by Julian C. Rutherford, Shulamit Jaron, Dennis R. Winge posted to bzip cad1 by hplatero on 2008-10-06 23:12:55 as
	Regulation of fungal gene expression via short open reading frames in the mRNA 5'untranslated region [My Copy] Molecular Microbiology, Vol. 49, No. 4. (2003), pp. 859-867. by Cristina Vilela, John E. G. Mccarthy posted to bzip regulation yap1 by hplatero on 2008-10-06 22:58:30 as
	A systems approach to delineate functions of paralogous transcription factors: Role of the Yap family in the DNA damage response [My Copy] PNAS, Vol. 105, No. 8. (26 February 2008), pp. 2934-2939. by Kai posted to bzip yap6 by hplatero on 2008-10-02 22:43:54 as
	Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i165-171. by Lucas D. Ward, Harmen J. Bussemaker posted to bzip yap6 by hplatero on 2008-10-02 22:40:27 as along with 6 people mox druvus kittipat emptyhb xili03 maximilianh
	A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription [My Copy] Nature Genetics, Vol. 39, No. 3. (26 February 2007), pp. 303-309. by Israel Steinfeld, Ron Shamir, Martin Kupiec posted to bzip yap6 by hplatero on 2008-10-02 22:15:34 as along with 1 person zwang
	Genomic analysis of the hierarchical structure of regulatory networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 40. (3 October 2006), pp. 14724-14731. by Haiyuan Yu, Mark Gerstein posted to bzip yap6 by hplatero on 2008-10-02 21:20:16 as along with 6 people arjun_citeulike carlk jiny bootsy RobMills dquest
	Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae [My Copy] Nucleic Acids Research, Vol. 34, No. 3. (2006), pp. 917-927. by Xueping Yu, Jimmy Lin, Tomohiro Masuda, Noriko Esumi, Donald J. Zack, Jiang Qian posted to bzip yap6 by hplatero on 2008-10-02 20:39:09 as along with 2 people olympos snow_dragon
	A latent variable model for chemogenomic profiling [My Copy] Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3286-3293. by Patrick Flaherty, Guri Giaever, Jochen Kumm, Michael I. Jordan, Adam P. Arkin posted to bzip yap6 by hplatero on 2008-10-02 20:33:37 as
	Validation and refinement of gene-regulatory pathways on a network of physical interactions. [My Copy] Genome Biol, Vol. 6, No. 7. (2005) by C. H. Yeang, H. C. Mak, S. McCuine, C. Workman, T. Jaakkola, T. Ideker posted to bzip by hplatero on 2008-10-02 20:23:49 as along with 14 people and 1 group kaarsinogen isimpson snuppepuppan abhik tmmurali textoris wnpx noano koller ccr cdppublications AlexanderPico carlk jago CDP
	Close encounters of many kinds: Fos-Jun interactions that mediate transcription regulatory specificity [My Copy] Oncogene, Vol. 20, No. 19. (April 2001), pp. 2438-2452. by Yurii posted to bzip by hplatero on 2008-05-30 22:20:50 as
	Dimers, leucine zippers and DNA-binding domains. [My Copy] Trends in genetics : TIG, Vol. 6, No. 2. (February 1990), pp. 36-40. by S. J. Busch, P. Sassone-Corsi posted to bzip by hplatero on 2008-05-19 20:55:42 as
	The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. [My Copy] Science, Vol. 240 (1988), pp. 1759-1764. by Landschulz posted to bzip by hplatero on 2008-05-19 20:55:24 as
	Yeast putative transcription factors involved in salt tolerance [My Copy] FEBS Letters, Vol. 425, No. 2. (27 March 1998), pp. 323-328. by Iratxe Mendizabal, Gabino Rios, Jose M. Mulet, Ramón Serrano, Iñigo F. de Larrinoa posted to bzip cin5 yap6 by hplatero on 2008-05-16 22:19:38 as
	Effects of side-chain characteristics on stability and oligomerization state of a de Novo-designed model coiled-coil: 20 amino acid substitutions in position “d”1 [My Copy] Journal of Molecular Biology, Vol. 300, No. 2. (07 July 2000), pp. 377-402. by Brian Tripet, Kurt Wagschal, Pierre Lavigne, Colin T. Mant, Robert S. Hodges posted to bzip by hplatero on 2008-05-16 00:09:27 as along with 3 people dr_proton cjeans ca3295
	Leucine Is the Most Stabilizing Aliphatic Amino Acid in the d Position of a Dimeric Leucine Zipper Coiled Coil [My Copy] Biochemistry, Vol. 36 (1997), pp. 12567-12573. by Jaideep posted to bzip by hplatero on 2008-05-16 00:01:54 as
	Reconstruction of ancestral protein interaction networks for the bZIP transcription factors. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 51. (18 December 2007), pp. 20449-20453. by John W. Pinney, Grigoris D. Amoutzias, Magnus Rattray, David L. Robertson posted to bzip by hplatero on 2008-05-14 07:20:37 as along with 7 people carlk biomcgary saket tmmurali grahamc cjeans Pao-Yang
	AP-1 subunits: quarrel and harmony among siblings. [My Copy] Journal of cell science, Vol. 117, No. Pt 25. (1 December 2004), pp. 5965-5973. by J. Hess, P. Angel, M. Schorpp-Kistner posted to bzip by hplatero on 2008-05-14 07:05:51 as along with 1 person shikin
	Identification and purification of a Saccharomyces cerevisiae protein with the DNA binding specificity of mammalian activating transcription factor. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 86, No. 1. (January 1989), pp. 109-113. by Y. S. Lin, M. R. Green posted to bzip by hplatero on 2008-05-14 04:57:12 as
	Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes [My Copy] Science, Vol. 290, No. 5499. (15 December 2000), pp. 2105-2110. by J. L. Riechmann, J. Heard, G. Martin, et al.L. Reuber, -Z, Jiang, J. Keddie, L. Adam, O. Pineda, O. J. Ratcliffe, R. R. Samaha, R. Creelman, M. Pilgrim, P. Broun, J. Z. Zhang, D. Ghandehari, B. K. Sherman, -L posted to bzip by hplatero on 2008-04-23 18:46:36 as along with 6 people and 2 groups mlog megraw tny nickluscombe kengg Hummel EBI-regulation Plantandetc
	Diverse functions of JNK signaling and c-Jun in stress response and apoptosis [My Copy] Oncogene, Vol. 18, No. 45. (November 1999), pp. 6158-6162. by Sirpa posted to bzip by hplatero on 2008-04-23 18:36:52 as
	Transcription Factor Families Have Much Higher Expansion Rates in Plants than in Animals [My Copy] Plant Physiol., Vol. 139, No. 1. (1 September 2005), pp. 18-26. by Shin-Han Shiu, Ming-Che Shih, Wen-Hsiung Li posted to bzip by hplatero on 2008-04-21 22:52:31 as
	AP-1 transcription factors in yeast [My Copy] Current Opinion in Genetics & Development, Vol. 9, No. 1. (February 1999), pp. 55-61. by Mark W. Toone, Nic Jones posted to bzip by hplatero on 2008-04-17 03:33:05 as
	Yeast bZip proteins mediate pleiotropic drug and metal resistance [My Copy] J. Biol. Chem., Vol. 268, No. 25. (5 September 1993), pp. 18850-18858. by A. Wu, J. A. Wemmie, N. P. Edgington, M. Goebl, J. L. Guevara, W. S. Moye-Rowley posted to bzip first_paper by hplatero on 2008-04-15 21:54:46 as
	Structure-based prediction of bZIP partnering specificity. [My Copy] J Mol Biol, Vol. 355, No. 5. (3 February 2006), pp. 1125-1142. by G. Grigoryan, A. E. Keating posted to bzip by hplatero on 2008-04-15 21:45:40 as along with 4 people cjeans gwenknight chgjb ca3295
	bZIPDB : A database of regulatory information for human bZIP transcription factors [My Copy] BMC Genomics, Vol. 8 (30 May 2007), 136. by Taewoo Ryu, Juhyun Jung, Sunjae Lee, et al.Ho J. Nam, Sun W. Hong, Jae W. Yoo, Dong-Ki Lee, Doheon Lee posted to bzip by hplatero on 2008-04-15 21:40:32 as along with 1 person cjeans
	Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network [My Copy] BMC Genomics, Vol. 7, No. 1. (2006) by Gregory Amoutzias, Erich B. Bauer, Stephen Oliver, David Robertson posted to bzip by hplatero on 2008-04-15 20:43:07 as
	ER stress signaling by regulated splicing: IRE1/HAC1/XBP1. [My Copy] Methods (San Diego, Calif.), Vol. 35, No. 4. (April 2005), pp. 395-416. by S. H. Back, M. Schröder, K. Lee, K. Zhang, R. J. Kaufman posted to bzip by hplatero on 2008-04-10 20:05:16 as
	IRE1- and HAC1-independent transcriptional regulation in the unfolded protein response of yeast. [My Copy] Molecular microbiology, Vol. 49, No. 3. (August 2003), pp. 591-606. by M. Schröder, R. Clark, R. J. Kaufman posted to bzip by hplatero on 2008-04-10 19:56:25 as
	Yap5 Is an Iron-Responsive Transcriptional Activator That Regulates Vacuolar Iron Storage in Yeast [My Copy] Mol. Cell. Biol., Vol. 28, No. 4. (15 February 2008), pp. 1326-1337. by Liangtao Li, Dustin Bagley, Diane M. Ward, Jerry Kaplan posted to bzip by hplatero on 2008-04-10 19:21:12 as
	One Billion Years of bZIP Transcription Factor Evolution: Conservation and Change in Dimerization and DNA-Binding Site Specificity [My Copy] Molecular Biology and Evolution, Vol. 24, No. 3. (March 2007), pp. 827-835. by Amoutzias, Gd, Veron, et al. As, Weiner, J, Robinson-Rechavi, M, Bornberg-Bauer, E, Oliver, Sg, Robertson, Dl posted to bzip by hplatero on 2008-04-08 20:30:04 as along with 1 person gwenknight
	Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice. [My Copy] Plant Physiol, Vol. 146, No. 2. (February 2008), pp. 333-350. by A. Nijhawan, M. Jain, A. K. Tyagi, J. P. Khurana posted to bzip by hplatero on 2008-04-08 19:48:24 as along with 2 people gwenknight icq242500260
	Electrostatic control of half-site spacing preferences by the cyclic AMP response element-binding protein CREB [My Copy] Nucl. Acids Res., Vol. 29, No. 16. (15 August 2001), pp. 3311-3319. by Jin K. Montclare, Leslie S. Sloan, Alanna Schepartz posted to binding_specificity bzip by hplatero on 2008-02-11 22:27:04 as
	Structural Basis for DNA Recognition by the Basic Region Leucine Zipper Transcription Factor CCAAT/Enhancer-binding Protein alpha [My Copy] J. Biol. Chem., Vol. 278, No. 17. (18 April 2003), pp. 15178-15184. by Maria Miller, Jon D. Shuman, Thomas Sebastian, Zbigniew Dauter, Peter F. Johnson posted to bzip transfac_consensus_sequences by hplatero on 2008-02-08 21:25:12 as
	A thermodynamic scale for leucine zipper stability and dimerization specificity: e and g interhelical interactions. [My Copy] EMBO J, Vol. 13, No. 12. (1994), pp. 2849-2861. by Krylov posted to bzip eg_interactions by hplatero on 2008-02-08 18:37:43 as
	A heterodimerizing leucine zipper coiled coil system for examining the specificity of a position interactions: amino acids I, V, L, N, A, and K. [My Copy] Biochemistry, Vol. 41, No. 48. (3 December 2002), pp. 14122-14131. by A. Acharya, S. B. Ruvinov, J. Gal, J. R. Moll, C. Vinson posted to bzip ge_interactions by hplatero on 2008-02-08 05:56:30 as along with 1 person kgutwin
	The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl [My Copy] Genes Dev., Vol. 11, No. 22. (15 November 1997), pp. 2983-2995. by Tokitaka Oyama, Yoshiro Shimura, Kiyotaka Okada posted to bzip by hplatero on 2008-01-31 01:38:05 as
	Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions [My Copy] Proceedings of the National Academy of Sciences, Vol. 97, No. 21. (10 October 2000), pp. 11632-11637. by Yuichi Uno, Takashi Furihata, Hiroshi Abe, Riichiro Yoshida, Kazuo Shinozaki, Kazuko Yamaguchi-Shinozaki posted to bzip by hplatero on 2008-01-31 01:30:21 as
	Ybp1 is required for the hydrogen peroxide-induced oxidation of the Yap1 transcription factor. [My Copy] J Biol Chem, Vol. 278, No. 33. (15 August 2003), pp. 30896-30904. by E. A. Veal, S. J. Ross, P. Malakasi, E. Peacock, B. A. Morgan posted to bzip regulation_of_tfs yap1 yml007w by hplatero on 2008-01-18 22:39:19 as
	The Aspergillus niger GCN4 homologue, cpcA, is transcriptionally regulated and encodes an unusual leucine zipper. [My Copy] Mol Microbiol, Vol. 23, No. 1. (January 1997), pp. 23-33. by C. Wanke, S. Eckert, G. Albrecht, et al.W. van Hartingsveldt, P. J. Punt, C. A. van den Hondel, G. H. Braus posted to bzip unusual_lz by hplatero on 2008-01-16 19:43:47 as
	Yap, a novel family of eight bZIP proteins in Saccharomyces cerevisiae with distinct biological functions [My Copy] Mol. Cell. Biol., Vol. 17, No. 12. (1 December 1997), pp. 6982-6993. by L. Fernandes, C. Rodrigues-Pousada, K. Struhl posted to basic_leucine_zipper bzip yap by hplatero on 2008-01-15 18:57:13 as
	Yeast putative transcription factors involved in salt tolerance. [My Copy] FEBS Lett, Vol. 425, No. 2. (27 March 1998), pp. 323-328. by I. Mendizabal, G. Rios, J. M. Mulet, R. Serrano, I. F. de Larrinoa posted to bzip transcription_factor yap by hplatero on 2008-01-15 18:44:21 as
	Regulation of the arsenic-responsive transcription factor Yap8p involves the ubiquitin-proteasome pathway. [My Copy] J Cell Sci, Vol. 120, No. Pt 2. (15 January 2007), pp. 256-264. by Y. Di, M. J. Tamás posted to bzip by hplatero on 2008-01-07 18:32:01 as

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quiescence	121
bzip	71
apoptosis	18
mediator	13
transcription	13
bzip_coactivator	10
ge_interactions	9
histone	9
yap6	8
saga	7
yap1	7
bzip_signal_transduction	6
cit1	6
cin5	5
first_paper	5
gcn5	5
ada	4
cad1	4
dna_binding	4
knr4	4
sko1	4
smi1	4
transcription_factor	4
ybzip_ortholog	4
gcn4	3
glucose	3
stress	3
yap4	3
aca1	2
acs1	2
arabidopsis	2
arr1	2
atf	2
bzip_ortholog	2
creb	2
elc1	2
g0	2
gfp	2
hac1	2
hog	2
hog1	2
hom3	2
lsb3	2
met28	2
osmotic_stress	2
oxidative	2
rap1	2
regulation	2
rgt1	2
sequence_logos	2
smt3	2
sumo	2
swc3	2
tfiid	2
tos1	2
yap	2
yap2	2
ybr162c	2
ygr229c	2
aca2	1
acr1	1
ada2	1
aft1	1
alg10	1
a_register	1
atypical_lz	1
basic_leucine_zipper	1
binding_specificity	1
brr2	1
bzip_ncrassa	1
bzip_orthologs	1
bzip_stability	1
bzip_subfamilies	1
bzip_virus	1
ccrnot	1
cit1_apoptosis	1
cit1_arabidopsis_ortholog	1
cit1_expression_induced	1
cit1_tca	1
clc1	1
clustering	1
cod1	1
coiled_coil	1
cos8	1
cst6	1
cyc8	1
cysteine	1
damage	1
die2	1
dimerization	1
dna-binding_domain	1
dna_damage	1
drosophila	1
eg_interactions	1
endocytic	1
er	1
exchange	1
factor	1
gcn4_ad	1
gcn4_degradation_domain	1
gcn4_nls	1
gcn4_ortholog	1
go_terms	1
hat	1
human	1
hydrophobic_core	1
iks1	1
iron	1
leucine	1
lys5	1
lz	1
machinery	1
maf	1
marcoil	1
mememotif1440	1
met4	1
mig1	1
mrna	1
nls	1
orthologs	1
osmotic	1
oxidative_stress	1
pac10	1
pathway	1
pgs1	1
ppi	1
rap	1
rapamycin	1
regula	1
regulation_of_tfs	1
repression	1
repressor	1
response	1
ribosome	1
rnapolii	1
sgd	1
skn-1	1
slt2	1
smk1	1
specificity	1
spf1	1
spt3	1
stability	1
stress_response	1
swc1	1
swisnf	1
taf17	1
taf25	1
taf9	1
telomere	1
tf_database	1
tma22	1
tor	1
tor_signaling	1
transfac_consensus_sequences	1
tup1	1
two-hybrid	1
unusual_lz	1
utr	1
yap3	1
yca1	1
yeast	1
yjr014w	1
ylr437c	1
yml007w	1
ypr054w	1
ypr199c	1
zipper	1
zpr1	1

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