hryk's protein-structure [35 articles] Export

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	Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 5, No. 12. (4 December 2009), e1000585. by John A. Capra, Roman A. Laskowski, Janet M. Thornton, Mona Singh, Thomas A. Funkhouser posted to structure software protein-structure binding_site by hryk on 2009-12-07 19:29:24 as along with 3 people and 1 group sobolevnrm apaydin kshameer structural_bioinformatics
	Emerging structural insights into bacterial tyrosine kinases [My Copy] Trends in Biochemical Sciences, Vol. 34, No. 7. (12 July 2009), pp. 351-357. by Daniel C. Lee, Zongchao Jia posted to structure protein-structure phosphorylation by hryk on 2009-11-27 11:56:49 as along with 4 people carlosjavierna reyez kshameer neils
	An aPKC-Exocyst Complex Controls Paxillin Phosphorylation and Migration through Localised JNK1 Activation [My Copy] PLoS Biol, Vol. 7, No. 11. (3 November 2009), e1000235. by Carine Rosse, Etienne Formstecher, Katrina Boeckeler, et al.Yingming Zhao, Joachim Kremerskothen, Michael D. White, Jacques H. Camonis, Peter J. Parker posted to protein-structure programming molecular_dynamics maximum-likelifood by hryk on 2009-11-06 09:15:04 as along with 1 person renatomilani
	Dynamic interactions of proteins in complex networks: a more structured view [My Copy] FEBS Journal, Vol. 276, No. 19. (2009), pp. 5390-5405. by Amelie Stein, Roland A. Pache, Pau Bernadó, Miquel Pons, Patrick Aloy posted to protein-structure by hryk on 2009-10-21 12:11:38 as
	A simple method for displaying the hydropathic character of a protein. [My Copy] Journal of molecular biology, Vol. 157, No. 1. (5 May 1982), pp. 105-132. by J. Kyte, R. F. Doolittle posted to hydrophobicity protein-structure by hryk on 2009-07-10 15:57:42 as along with 9 people krapnik barmak7282 thaliana chad_davis dgront medic0747 ashaytan Ema bicko
	Prediction of protein antigenic determinants from amino acid sequences [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 78, No. 6. (June 1981), pp. 3824-3828. by T. P. Hopp, K. R. Woods posted to hydrophobicity protein-structure by hryk on 2009-07-10 15:49:45 as along with 1 person ashaytan
	DisProt: the Database of Disordered Proteins. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007), pp. D786-D793. by Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, et al.Vladimir Vacic, Marc S. Cortese, Agnes Tantos, Beata Szabo, Peter Tompa, Jake Chen, Vladimir N. Uversky, Zoran Obradovic, A. Keith Dunker posted to disorder protein-structure by hryk on 2009-06-26 12:56:38 as along with 2 people pablocarb robfsouza
	Prediction of disordered regions in proteins from position specific score matrices. [My Copy] Proteins, Vol. 53 Suppl 6 (2003), pp. 573-578. by D. T. Jones, J. J. Ward posted to disorder protein-structure by hryk on 2009-06-26 12:55:13 as along with 2 people pablocarb chad_davis
	Combining docking and molecular dynamic simulations in drug design. [My Copy] Med Res Rev (6 June 2006) by Hernán Alonso, Andrey A A. Bliznyuk, Jill E E. Gready posted to molecular_dynamics protein-structure structure by hryk on 2009-05-06 20:29:01 as along with 8 people and 2 groups karinaecomp flbarroso oteri A_Coletta_Thesis aqeel yongzhao kazemi LamBras Structural Biology Group TorVergata TSRI_MGL
	Environment and exposure to solvent of protein atoms. Lysozyme and insulin. [My Copy] Journal of molecular biology, Vol. 79, No. 2. (15 September 1973), pp. 351-371. by A. Shrake, J. A. Rupley posted to protein-structure by hryk on 2009-01-20 14:46:04 as along with 4 people and 4 groups Thermaneutist oceanwind Lombardo_7 HEIRS HEIRS MCS HEIRS Immunology and Autoimmune Diseases HEIRS - Environmental Illness Research HEIRS Diabetes, Insulin Resistance and Metabolic Syndrome Research
	Introduction of solvent-accessible surface area in the calculation of the hydrophobicity parameter log <I>P</I> from an atomistic approach [My Copy] Journal of Pharmaceutical Sciences, Vol. 86, No. 1. (1997), pp. 57-63. by Takashi Masuda, Takahiro Jikihara, Katsuhiko Nakamura, Atsuomi Kimura, Tatsuya Takagi, Hideaki Fujiwara posted to protein-structure by hryk on 2009-01-19 06:07:51 as
	Joint neighbors approximation of macromolecular solvent accessible surface area. [My Copy] J Comput Chem (3 April 2007) by Georgy Rychkov, Michael Petukhov posted to protein-structure by hryk on 2009-01-18 12:38:42 as along with 3 people dgront mijam BragilMassoud
	On the precision of calculated solvent-accessible surface areas [My Copy] Acta Crystallographica Section D Biological Crystallography, Vol. 63, No. 2. (16 January 2007), pp. 270-274. by Marian Novotny, Marvin Seibert, Gerard J. Kleywegt posted to protein-structure by hryk on 2009-01-18 12:35:56 as along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
	The burial of solvent-accessible surface area is a predictor of polypeptide folding and misfolding as a function of chain elongation. [My Copy] J Am Chem Soc, Vol. 127, No. 45. (16 November 2005), pp. 15690-15691. by N. Kurt, S. Cavagnero posted to protein-structure by hryk on 2009-01-18 12:28:25 as along with 1 person bilab
	A protein domain interaction interface database: InterPare. [My Copy] BMC Bioinformatics, Vol. 6 (25 August 2005) by S. Gong, C. Park, H. Choi, et al.J. Ko, I. Jang, J. Lee, D. M. Bolser, D. Oh, D. S. Kim, J. Bhak posted to domain interaction protein-structure by hryk on 2009-01-18 12:26:02 as along with 1 person bicko
	A novel method reveals that solvent water favors polyproline II over beta-strand conformation in peptides and unfolded proteins: conditional hydrophobic accessible surface area (CHASA). [My Copy] Protein science : a publication of the Protein Society, Vol. 14, No. 1. (January 2005), pp. 111-118. by P. J. Fleming, N. C. Fitzkee, M. Mezei, R. Srinivasan, G. D. Rose posted to protein-structure by hryk on 2009-01-18 12:22:19 as
	Fast accurate evaluation of protein solvent exposure [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 57, No. 3. (2004), pp. 565-576. by Naigong Zhang, Chen Zeng, Ned S. Wingreen posted to protein-structure by hryk on 2009-01-18 12:18:04 as along with 1 person j3xucite
	Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins. [My Copy] J Comput Chem, Vol. 25, No. 5. (15 April 2004), pp. 712-724. by E. Eyal, R. Najmanovich, B. J. McConkey, M. Edelman, V. Sobolev posted to protein-structure by hryk on 2009-01-18 12:14:31 as along with 3 people j3xucite blackbart mirzazadeh
	Solvent accessible surface area (ASA) of simulated phospholipid membranes. [My Copy] Chemistry and physics of lipids, Vol. 123, No. 1. (March 2003), pp. 107-116. by E. Tüchsen, M. Ø. Jensen M, P. Westh posted to protein-structure by hryk on 2009-01-18 12:10:21 as
	Real value prediction of solvent accessibility from amino acid sequence. [My Copy] Proteins, Vol. 50, No. 4. (1 March 2003), pp. 629-635. by S. Ahmad, M. M. Gromiha, A. Sarai posted to protein-structure by hryk on 2009-01-18 12:07:16 as along with 1 person kaarsinogen
	Can we separate active from inactive conformations? [My Copy] Journal of computer-aided molecular design, Vol. 16, No. 2. (February 2002), pp. 105-112. by D. J. Diller, K. M. Merz posted to protein-structure by hryk on 2009-01-18 12:04:41 as along with 2 people JALumley massivemayhem
	Quantifying the accessible surface area of protein residues in their local environment [My Copy] Protein Eng., Vol. 15, No. 8. (1 August 2002), pp. 659-667. by Uttamkumar Samanta, Ranjit P. Bahadur, Pinak Chakrabarti posted to protein-structure by hryk on 2009-01-18 12:02:58 as along with 1 person ashaytan
	Atom depth in protein structure and function. [My Copy] Trends Biochem Sci, Vol. 28, No. 11. (November 2003), pp. 593-597. by A. Pintar, O. Carugo, S. Pongor posted to protein-structure by hryk on 2009-01-18 11:58:05 as along with 2 people and 2 groups barry lna structural_bioinformatics Bioinformatics
	A novel approach for identifying the surface atoms of macromolecules. [My Copy] Journal of molecular graphics & modelling, Vol. 20, No. 5. (March 2002), pp. 415-425. by F. Deanda, R. S. Pearlman posted to protein-structure by hryk on 2009-01-18 11:56:15 as
	Residue depth: a novel parameter for the analysis of protein structure and stability. [My Copy] Structure, Vol. 7, No. 7. (15 July 1999), pp. 723-732. by S. Chakravarty, R. Varadarajan posted to protein-structure by hryk on 2009-01-18 11:49:55 as along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
	Pairwise calculation of protein solvent-accessible surface areas. [My Copy] Folding & design, Vol. 3, No. 4. (1998), pp. 253-258. by A. G. Street, S. L. Mayo posted to protein-structure by hryk on 2009-01-18 11:41:33 as along with 1 person dfgreen
	Access to phosphorylation in isocitrate dehydrogenase may occur by domain shifting. [My Copy] Biochemistry, Vol. 36, No. 45. (11 November 1997), pp. 13890-13896. by J. Finer-Moore, S. E. Tsutakawa, D. R. Cherbavaz, D. C. LaPorte, D. E. Koshland, R. M. Stroud posted to protein-structure by hryk on 2009-01-18 11:38:31 as
	Atomic environment energies in proteins defined from statistics of accessible and contact surface areas. [My Copy] Journal of molecular biology, Vol. 249, No. 3. (9 June 1995), pp. 675-690. by M. Delarue, P. Koehl posted to protein-structure by hryk on 2009-01-18 11:28:58 as
	Surface area included in energy refinement of proteins. A comparative study on atomic solvation parameters. [My Copy] Journal of molecular biology, Vol. 233, No. 2. (20 September 1993), pp. 275-292. by B. von Freyberg, T. J. Richmond, W. Braun posted to protein-structure by hryk on 2009-01-18 11:25:10 as
	Experimental and theoretical studies of the three-dimensional structure of human interleukin-4. [My Copy] Proteins, Vol. 11, No. 2. (1991), pp. 111-119. by B. M. Curtis, S. R. Presnell, S. Srinivasan, et al.H. Sassenfeld, R. Klinke, E. Jeffery, D. Cosman, C. J. March, F. E. Cohen posted to protein-structure by hryk on 2009-01-18 11:17:53 as
	Accessible Surface Areas as a Measure of the Thermodynamic Parameters of Hydration of Peptides [My Copy] Proceedings of the National Academy of Sciences, Vol. 84, No. 10. (15 May 1987), pp. 3086-3090. by Tatsuo Ooi, Motohisa Oobatake, George Nemethy, Harold A. Scheraga posted to protein-structure by hryk on 2009-01-18 11:14:11 as along with 2 people j3xucite qwermish
	Distribution of accessible surfaces of amino acids in globular proteins. [My Copy] Proteins, Vol. 2, No. 2. (1987), pp. 153-161. by C. Lawrence, I. Auger, C. Mannella posted to protein-structure by hryk on 2009-01-18 11:11:17 as along with 1 person ashaytan
	Solvent accessibility, protein surfaces, and protein folding. [My Copy] Biophysical journal, Vol. 32, No. 1. (October 1980), pp. 35-47. by A. M. Lesk, C. Chothia posted to protein-structure by hryk on 2009-01-18 11:08:24 as
	Role of subunit interfaces in the allosteric mechanism of hemoglobin. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 73, No. 11. (November 1976), pp. 3793-3797. by C. Chothia, S. Wodak, J. Janin posted to protein-structure by hryk on 2009-01-18 10:59:51 as
	Impact of residue accessible surface area on the prediction of protein secondary structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (31 August 2008), 357. by Amir M. Roknabadi, Mehdi Sadeghi, Hamid Pezeshk, Sayed A. Marashi posted to protein-structure by hryk on 2008-11-27 17:39:32 as along with 3 people marashi trevinor neils

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phosphorylation	51
network	35
protein-structure	35
ebi	35
structure	14
protein_asa_set	13
metabolic	12
essential	11
bioinformatics	9
review	8
ppi	7
software	7
yeast	6
protein	6
pathway	6
prediction	5
tool	5
ecoli	5
evolution	4
cluster	4
visualize	4
alignment	3
algorithm	3
topology	3
database	3
gene	3
signaling	3
protein_structures	3
model	3
accessible_surface_area	2
maximum-likelifood	2
programming	2
phylogenetic	2
analysis	2
graph	2
interaction	2
disorder	2
bacillus	2
game	2
protein_structure	2
molecular_dynamics	2
hydrophobicity	2
protein_interaction	1
virus	1
casp	1
sector	1
atom_depth	1
informatics	1
language	1
betweeness	1
clustering	1
method	1
webservice	1
mashup	1
construction	1
3d	1
genetic_interaction	1
egfr	1
protein-	1
nmr	1
multiple-knockout	1
domain_fusion	1
mirna	1
domain	1
protein_surface	1
robustness	1
protein_synthesis	1
must	1
il-1	1
interactome	1
gnutella	1
proteins	1
ligand_binding	1
transcript	1
dpx	1
inheritance	1
binding_site	1
regulatory	1
synthetic	1
degradation	1
atoms	1
solvent_accessible_surface	1
cytokine	1
salmonella_typhi	1
hadoop	1
transposon_insertion	1
hiv	1
phylogenetic-tree	1
imaging	1
grid	1
saccharomyces	1

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