iantunbridge's library 68 articles Export

	Global structural changes in hepatitis B virus capsids induced by the assembly effector HAP1. [My Copy] Journal of virology, Vol. 80, No. 22. (November 2006), pp. 11055-11061. by Christina R. Bourne, M. G. Finn, Adam Zlotnick posted to no-tag by iantunbridge on 2009-11-19 14:21:27 as
	Statistical Mechanics: A Concise Introduction for Chemists [My Copy] (03 May 2002) by B. Widom posted to no-tag by iantunbridge on 2009-10-30 10:15:43 as
	Equation of State Calculations by Fast Computing Machines [My Copy] The Journal of Chemical Physics, Vol. 21, No. 6. (1953), pp. 1087-1092. by Nicholas Metropolis, Arianna W. Rosenbluth, Marshall N. Rosenbluth, Augusta H. Teller, Edward Teller posted to no-tag by iantunbridge on 2009-10-29 09:43:22 as along with 26 people eyliu zhaidong philipppixel wei flbarroso LGNR mcbla mrkn Diego_Prada jjray muraken scalptob ppeeling gale82 Jarosik apostola chad_davis tobin mkurc rabio gcalda Akimasa Bc91 guxiyou petermilner naegele
	GPU accelerated Monte Carlo simulation of the 2D and 3D Ising model☆ [My Copy] Journal of Computational Physics, Vol. 228, No. 12. (01 July 2009), pp. 4468-4477. by Tobias Preis, Peter Virnau, Wolfgang Paul, Johannes J. Schneider posted to no-tag by iantunbridge on 2009-10-28 09:54:05 as
	High-performance direct gravitational N-body simulations on graphics processing units [My Copy] New Astronomy, Vol. 12, No. 8. (23 November 2007), pp. 641-650. by Simon F. Portegies Zwart, Robert G. Belleman, Peter M. Geldof posted to no-tag by iantunbridge on 2009-10-11 21:35:54 as along with 1 person michaelbussmann
	Computer Graphics: Principles and Practice [My Copy] (15 June 1990) by James D. Foley, Andries Van Dam, Steven K. Feiner, John F. Hughes posted to quaternions matrix_multiplication by iantunbridge on 2009-10-08 14:43:32 as
	Derivation of the Euler-Rodrigues formula for three-dimensional rotations from the general formula for four-dimensional rotations [My Copy] (26 Jan 2007) by Johan E. Mebius posted to no-tag by iantunbridge on 2009-10-08 14:24:20 as
	A precision- and range-independent tool for testing floating-point arithmetic II: conversions [My Copy] ACM Trans. Math. Softw., Vol. 27, No. 1. (2001), pp. 119-140. by Brigitte Verdonk, Annie Cuyt, Dennis Verschaeren posted to no-tag by iantunbridge on 2009-10-06 12:47:06 as
	A precision- and range-independent tool for testing floating-point arithmetric I: basic operations, square root, and remainder [My Copy] ACM Trans. Math. Softw., Vol. 27, No. 1. (March 2001), pp. 92-118. by Bridgitte Verdonk, Annie Cuyt, Dennis Verschaeren posted to no-tag by iantunbridge on 2009-10-06 12:40:30 as along with 1 person mmuecke
	Evaluation of IEEE 754 floating-point arithmetic compliance across a wide range of heterogeneous computers [My Copy] In TAPIA '07: Proceedings of the 2007 conference on Diversity in computing (2007), pp. 1-4. by Guillermo A. Lopez, Michela Taufer, Patricia J. Teller posted to no-tag by iantunbridge on 2009-10-06 12:34:16 as
	High Performance Direct Gravitational N-body Simulations on Graphics Processing Units -- II: An implementation in CUDA [My Copy] New Astronomy, Vol. 13, No. 2. (16 Jul 2007), pp. 103-112. by Robert G. Belleman, Jeroen Bedorf, Simon P. Zwart posted to nbody cuda by iantunbridge on 2009-09-17 12:40:35 as along with 2 people dcastro michaelbussmann
	CUDA Programming Guide 2.3 [My Copy] (2009) posted to cuda by iantunbridge on 2009-09-08 11:13:16 as
	Fast Parallel Algorithms for Short-Range Molecular Dynamics [My Copy] Journal of Computational Physics, Vol. 117 (1995), pp. 1-19. by Steve Plimpton posted to no-tag by iantunbridge on 2009-07-24 11:39:47 as
	Inherent limitations in protein--protein docking procedures [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 421-426. by Noga Kowalsman, Miriam Eisenstein posted to no-tag by iantunbridge on 2009-07-24 11:06:23 as along with 4 people flbarroso bicko chad_davis rabio
	SIMD-Oriented Fast Mersenne Twister: a 128-bit Pseudorandom Number Generator [My Copy] Monte Carlo and Quasi-Monte Carlo Methods 2006 (2008), pp. 607-622. by Mutsuo Saito, Makoto Matsumoto posted to no-tag by iantunbridge on 2009-07-15 22:37:36 as along with 1 person croys
	Mersenne twister: a 623-dimensionally equidistributed uniform pseudo-random number generator [My Copy] ACM Trans. Model. Comput. Simul., Vol. 8, No. 1. (January 1998), pp. 3-30. by Makoto Matsumoto, Takuji Nishimura posted to no-tag by iantunbridge on 2009-07-15 16:28:36 as along with 6 people kdesmond malibu danlea embersp chad_davis deactivated
	What every computer scientist should know about floating-point arithmetic [My Copy] ACM Comput. Surv., Vol. 23, No. 1. (March 1991), pp. 5-48. by David Goldberg posted to no-tag by iantunbridge on 2009-05-05 14:07:20 as along with 13 people jmmcg gvdh ashwinn mmuecke alucke thang_spsc michaelbanks ansobol mapio bfraser eyliu rabio rstata
	The pitfalls of verifying floating-point computations [My Copy] (22 May 2008) by David Monniaux posted to floats by iantunbridge on 2009-05-05 14:06:10 as
	A decentralized parallel implementation for parallel tempering algorithm [My Copy] Parallel Computing (31 December 2008) by Y. Li, M. Mascagni, A. Gorin posted to no-tag by iantunbridge on 2009-05-04 10:51:41 as
	General purpose molecular dynamics simulations fully implemented on graphics processing units [My Copy] Journal of Computational Physics, Vol. 227, No. 10. (01 May 2008), pp. 5342-5359. by J. Anderson, C. Lorenz, A. Travesset posted to no-tag by iantunbridge on 2009-04-15 13:24:22 as along with 5 people melo_mcr georgwachter RamuAnandakrishnan timg michaelbussmann
	Porting a high-order finite-element earthquake modeling application to NVIDIA graphics cards using CUDA [My Copy] Journal of Parallel and Distributed Computing, Vol. 69, No. 5. (May 2009), pp. 451-460. by Dimitri Komatitsch, David Michéa, Gordon Erlebacher posted to no-tag by iantunbridge on 2009-04-15 11:09:38 as
	Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L [My Copy] Parallel and Distributed Processing Symposium, 2006. IPDPS 2006. 20th International In Parallel and Distributed Processing Symposium, 2006. IPDPS 2006. 20th International (2006), 8 pp.. by M. Eleftheriou, A. Rayshubski, J. W. Pitera, B. G. Fitch, R. Zhou, R. S. Germain posted to no-tag by iantunbridge on 2009-04-14 15:53:48 as
	Accelerating molecular dynamic simulation on graphics processing units [My Copy] Journal of Computational Chemistry, Vol. 30, No. 6. (2009), pp. 864-872. by Mark S. Friedrichs, Peter Eastman, Vishal Vaidyanathan, et al.Mike Houston, Scott Legrand, Adam L. Beberg, Daniel L. Ensign, Christopher M. Bruns, Vijay S. Pande posted to no-tag by iantunbridge on 2009-04-09 11:57:12 as along with 11 people and 3 groups oteri anuragsethi kevinchannon flbarroso r2s2 ihaque sobolevnrm ruvido massivemayhem barry RamuAnandakrishnan baker-group structural_bioinformatics McCammon
	Theory and simulation of macromolecular crowding effects on protein folding stability and kinetics [My Copy] (26 Feb 2009) by Jeetain Mittal, Robert B. Best posted to macromolecular_crowding by iantunbridge on 2009-03-04 12:21:40 as along with 2 people saunders EricaJSaltzman
	A Survey of General-Purpose Computation on Graphics Hardware [My Copy] Computer Graphics Forum, Vol. 26, No. 1. (March 2007), pp. 80-113. by John D. Owens, David Luebke, Naga Govindaraju, et al.Mark Harris, Jens Krüger, Aaron E. Lefohn, Timothy J. Purcell posted to no-tag by iantunbridge on 2009-02-19 13:37:09 as along with 9 people damiansule mthomure mmeteo je55ek Jingbo jsenn kroatiker mjoach ronnix
	Mapping computational concepts to GPUs [My Copy] In SIGGRAPH '05: ACM SIGGRAPH 2005 Courses (2005), 50. by Mark Harris posted to no-tag by iantunbridge on 2009-02-19 13:33:31 as along with 1 person kroatiker
	Understanding the Metropolis-Hastings Algorithm [My Copy] The American Statistician, Vol. 49, No. 4. (November 1995), pp. 327-335. by Siddhartha Chib, Edward Greenberg posted to no-tag by iantunbridge on 2009-02-19 09:51:56 as
	Parallel tempering: Theory, applications, and new perspectives [My Copy] Phys. Chem. Chem. Phys., Vol. 7, No. 23. (2005), pp. 3910-3916. by David J. Earl, Michael W. Deem posted to mc by iantunbridge on 2009-02-19 09:48:20 as along with 1 person itmeson
	Program optimization carving for GPU computing☆ [My Copy] Journal of Parallel and Distributed Computing In General-Purpose Processing using Graphics Processing Units, Vol. 68, No. 10. (October 2008), pp. 1389-1401. by S. Ryoo, C. Rodrigues, S. Stone, et al.J. Stratton, S. Ueng, S. Baghsorkhi, W. Hwu posted to no-tag by iantunbridge on 2008-09-17 14:29:32 as
	Efficient computation of sum-products on GPUs through software-managed cache [My Copy] In ICS '08: Proceedings of the 22nd annual international conference on Supercomputing (2008), pp. 309-318. by Mark Silberstein, Assaf Schuster, Dan Geiger, Anjul Patney, John D. Owens posted to gpu sum-products by iantunbridge on 2008-09-09 13:25:25 as along with 1 person mrt2k9
	The Electrostatic Properties of Membranes [My Copy] Annual Review of Biophysics and Biophysical Chemistry, Vol. 18, No. 1. (1989), pp. 113-136. by S. Mclaughlin posted to membrane_potentials by iantunbridge on 2008-09-01 13:32:23 as
	Atomic Structures of all the Twenty Essential Amino Acids and a Tripeptide, with Bond Lengths as Sums of Atomic Covalent Radii [My Copy] (21 Jun 2008) by Raji Heyrovska posted to no-tag by iantunbridge on 2008-07-04 12:56:48 as
	Local repulsion in protein structures as revealed by a charge distribution analysis of all amino acid sequences from the Saccharomyces cerevisiae genome [My Copy] Journal of Physics: Condensed Matter, Vol. 17, No. 31. (2005), pp. S2825-S2831. by Runcong Ke, Shigeki Mitaku posted to elementary_charge by iantunbridge on 2008-06-12 10:23:20 as
	Pair potentials for protein folding: choice of reference states and sensitivity of predicted native states to variations in the interaction schemes [My Copy] Protein Sci, Vol. 8, No. 2. (1 February 1999), pp. 361-369. by M. R. Betancourt, D. Thirumalai posted to pair potentials by iantunbridge on 2008-06-12 09:20:58 as along with 1 person krapnik
	Self-consistent estimation of interresidue protein contact energies based on an equilibrium mixture approximation of residues [My Copy] (1998) by S. Miyazawa posted to no-tag by iantunbridge on 2008-06-12 09:16:56 as along with 1 person krapnik
	Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct? [My Copy] Protein science : a publication of the Protein Society, Vol. 6, No. 3. (1 March 1997), pp. 676-688. by J. Skolnick, L. Jaroszewski, A. Kolinski, A. Godzik posted to pair potentials by iantunbridge on 2008-06-12 09:10:01 as along with 2 people qluo krapnik
	Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term [My Copy] (1996) by S. Miyazawa, R. Jernigan posted to no-tag by iantunbridge on 2008-06-11 15:54:14 as along with 1 person krapnik
	Slow protein conformational dynamics from multiple experimental structures: the helix/sheet transition of arc repressor. [My Copy] Structure, Vol. 13, No. 12. (December 2005), pp. 1755-1763. by R. B. Best, Y. G. Chen, G. Hummer posted to no-tag by iantunbridge on 2008-06-11 14:00:35 as along with 3 people aqeel choonpeng jlh64
	$My PDF fraczkiewicz_98_exact.pdf$ Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules [My Copy] Journal of Computational Chemistry, Vol. 19 (1998), pp. 319-333. by Robert Fraczkiewicz, Werner Braun posted to no-tag by iantunbridge on 2008-06-10 15:28:55 as
	Replica Monte Carlo Simulation of Spin-Glasses [My Copy] Physical Review Letters, Vol. 57, No. 21. (24 November 1986), 2607. by Robert H. Swendsen, Jian-Sheng Wang posted to remc by iantunbridge on 2008-06-10 12:10:20 as along with 6 people mijam Sylvain_Prigent dgront sikorski rabio qwermish
	Monte Carlo simulation of bifurcation in the intracellular viral kinetics [My Copy] Physical Biology, Vol. 2, No. 1. (March 2005), 46. by Vladimir P. Zhdanov posted to no-tag by iantunbridge on 2008-06-02 13:52:37 as
	VIPERdb: a relational database for structural virology. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by C. M. Shepherd, I. A. Borelli, G. Lander, et al.P. Natarajan, V. Siddavanahalli, C. Bajaj, J. E. Johnson, C. L. Brooks, V. S. Reddy posted to no-tag by iantunbridge on 2008-06-02 13:30:50 as
	A replica exchange Monte Carlo algorithm for protein folding in the HP model [My Copy] BMC Bioinformatics, Vol. 8 (17 September 2007), 342. by Chris Thachuk, Alena Shmygelska, Holger H. Hoos posted to no-tag by iantunbridge on 2008-05-09 16:25:00 as along with 3 people j3xucite insectopalo saunders
	Folding Behavior of Polypeptides. A Monte Carlo Study of Simplified Models [My Copy] Monatshefte für Chemie / Chemical Monthly, Vol. 137, No. 7. (13 July 2006), pp. 977-985. by Andrzej Sikorski, Piotr Romiszowski posted to no-tag by iantunbridge on 2008-05-09 16:15:47 as
	Deterministic Monte Carlo Methods and Parallelism [My Copy] In Sourcebook of Parallel Computing (2003), pp. 249-258. by Michael Mascagni edited by Denise Pentrose posted to no-tag by iantunbridge on 2008-05-08 11:53:51 as
	GPU accelerated molecular dynamics simulation of thermal conductivities [My Copy] Journal of Computational Physics, Vol. 221, No. 2. (10 February 2007), pp. 799-804. by Juekuan Yang, Yujuan Wang, Yunfei Chen posted to gpu monte-carlo by iantunbridge on 2008-04-09 14:57:35 as
	Don't trust parallel Monte Carlo! [My Copy] SIGSIM Simul. Dig., Vol. 28, No. 1. (July 1998), pp. 82-89. by P. Hellekalek posted to no-tag by iantunbridge on 2008-03-12 12:54:16 as
	Protein Design is NP-hard [My Copy] Protein Eng., Vol. 15, No. 10. (1 October 2002), pp. 779-782. by Niles A. Pierce, Erik Winfree posted to no-tag by iantunbridge on 2008-03-07 13:31:43 as along with 6 people ansobol ima gane5h bluvsh1 kray mijam
	The origins of asymmetry in the folding transition states of protein L and protein G. [My Copy] Protein Sci, Vol. 11, No. 10. (October 2002), pp. 2351-2361. by J. Karanicolas, C. L. Brooks posted to no-tag by iantunbridge on 2008-03-07 13:07:20 as along with 2 people choonpeng yalexeev
	Coarse-grained Models for Simulations of Multiprotein Complexes: Application to Ubiquitin Binding [My Copy] Journal of Molecular Biology, Vol. 375, No. 5. (01 February 2008), pp. 1416-1433. by Young C. Kim, Gerhard Hummer posted to no-tag by iantunbridge on 2008-03-07 12:52:19 as along with 4 people and 3 groups okapi barry sobolevnrm mikaellund structural_bioinformatics Bioinformatics baker-group

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