iaolier's library 46 articles Export

	Predicting functionally important residues from sequence conservation [My Copy] Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1875-1882. by John A. Capra, Mona Singh posted to functional_sites by iaolier on 2009-07-03 09:55:00 as along with 10 people and 1 group jinghu_fandm sivaramanb grahamc azazello zwang cabbagezs Jporci niallhaslam santiago dgront MBLAB
	Anticipation of pain enhances the nociceptive transmission and functional connectivity within pain network in rats [My Copy] Molecular Pain, Vol. 4, No. 1. (26 August 2008), 34. by Jin Y. Wang, Han T. Zhang, Jing Y. Chang, Donald Woodward, Luiz Baccala, Fei Luo posted to no-tag by iaolier on 2009-07-02 16:36:29 as
	Protein-ligand interaction prediction: an improved chemogenomics approach [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2149-2156. by Laurent Jacob, Jean-Philippe Vert posted to binding_sites_prediction machine_learning by iaolier on 2009-07-01 10:35:34 as along with 7 people jbesnard richardbickerton nilanjanroy ucbcjbm reyez GeeSharpMinor jxl
	Mining event-related brain dynamics [My Copy] Trends in Cognitive Sciences, Vol. 8, No. 5. (May 2004), pp. 204-210. by S. Makeig posted to mc by iaolier on 2009-06-04 15:46:57 as along with 5 people and 1 group reyntjesr garyfeng sbarthelme dimatura Ralf_Schmaelzle ReadingLab
	PyMVPA: A Unifying Approach to the Analysis of Neuroscientific Data. [My Copy] Frontiers in neuroinformatics, Vol. 3 (2009) by M. Hanke, Y. O. Halchenko, P. B. Sederberg, et al.E. Olivetti, I. Fründ, J. W. Rieger, C. S. Herrmann, J. V. Haxby, S. J. Hanson, S. Pollmann posted to mc by iaolier on 2009-06-04 15:46:35 as
	In silico identification of functional regions in proteins. [My Copy] Bioinformatics, Vol. 21 Suppl 1 (1 June 2005) by G. Nimrod, F. Glaser, D. Steinberg, N. Ben-Tal, T. Pupko posted to conservation_score functional_sites protein_structure by iaolier on 2009-06-03 15:38:14 as along with 2 people bicko sriram_s
	Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design [My Copy] Nucleic Acids Research, Vol. 33, No. 18. (2005), pp. 5861-5867. by Gong Cheng, Bin Qian, Ram Samudrala, David Baker posted to evolution functional_sites protein_structure by iaolier on 2009-06-03 15:28:15 as along with 1 person blackbart
	Estimation of Amino Acid Residue Substitution Rates at Local Spatial Regions and Application in Protein Function Inference: A Bayesian Monte Carlo Approach [My Copy] Molecular Biology and Evolution, Vol. 23, No. 2. (20 February 2006), pp. 421-436. by Yan Y. Tseng, Jie Liang posted to function_prediction markov_chain_monte_carlo sequence_alignment by iaolier on 2009-06-03 15:22:18 as along with 1 person drastic
	Prediction of functional specificity determinants from protein sequences using log-likelihood ratios [My Copy] Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 164-171. by Jimin Pei, Wei Cai, Lisa N. Kinch, Nick V. Grishin posted to function_prediction primary_sequence protein_classification by iaolier on 2009-06-03 15:06:24 as
	A structure and evolution-guided Monte Carlo sequence selection strategy for multiple alignment-based analysis of proteins [My Copy] Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 149-156. by I. Mihalek, I. Res, O. Lichtarge posted to monte_carlo_selection protein_structure sequence_alignment by iaolier on 2009-06-03 14:57:20 as
	SitesBase: a database for structure-based protein-ligand binding site comparisons [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_1. (1 January 2006), pp. D231-234. by Nicola D. Gold, Richard M. Jackson posted to binding_sites_prediction protein_structure web-based_tool by iaolier on 2009-06-03 14:52:23 as along with 2 people reyez mijam
	On the nature of cavities on protein surfaces: Application to the identification of drug-binding sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (13 February 2006), pp. 892-906. by Murad Nayal, Barry Honig posted to binding_sites_prediction machine_learning by iaolier on 2009-06-03 14:48:09 as along with 6 people and 1 group ubcg08l BragilMassoud pansapiens tjimenez Einat nickolay structural_bioinformatics
	Predicting protein interaction sites: binding hot-spots in protein-protein and protein-ligand interfaces [My Copy] Bioinformatics, Vol. 22, No. 11. (1 June 2006), pp. 1335-1342. by Nicholas J. Burgoyne, Richard M. Jackson posted to binding_sites_prediction protein-protein_interaction by iaolier on 2009-06-03 14:42:48 as along with 7 people jinghu_fandm timg bicko nickolay conkymacro marti ladab
	A two-stage approach for improved prediction of residue contact maps. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (30 March 2006) by Alessandro Vullo, Ian Walsh, Gianluca Pollastri posted to neural_networks primary_sequence protein_structure residue_contact by iaolier on 2009-06-03 14:38:53 as along with 1 person vavi
	Protein binding site prediction using an empirical scoring function [My Copy] Nucl. Acids Res., Vol. 34, No. 13. (7 August 2006), pp. 3698-3707. by Shide Liang, Chi Zhang, Song Liu, Yaoqi Zhou posted to binding_sites_prediction by iaolier on 2009-06-03 11:53:26 as along with 4 people dfdong bicko emidio_capriotti marti
	LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation [My Copy] BMC Structural Biology, Vol. 6, No. 1. (24 September 2006), 19. by Bingding Huang, Michael Schroeder posted to binding_sites_prediction protein_structure by iaolier on 2009-06-03 11:48:51 as along with 6 people superpyrin tomjad richardbickerton reyez tjimenez nickolay
	Modelling interaction sites in protein domains with interaction profile hidden Markov models [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2851-2857. by Torben Friedrich, Birgit Pils, Thomas Dandekar, Jorg Schultz, Tobias Muller posted to binding_sites_prediction hmm sequence_alignment by iaolier on 2009-06-03 11:46:32 as along with 1 person bicko
	Analysis and prediction of functionally important sites in proteins. [My Copy] Protein Sci, Vol. 16, No. 1. (January 2007), pp. 4-13. by S. Chakrabarti, C. J. Lanczycki posted to conservation_score functional_sites homology sequence_alignment by iaolier on 2009-06-03 11:43:03 as along with 6 people reyez tjimenez annotator_2006 MaggieYe zwang Jporci
	LigProf: A simple tool for in silico prediction of ligand-binding sites [My Copy] Journal of Molecular Modeling, Vol. 13, No. 3. (March 2007), pp. 445-455. by Grzegorz Koczyk, Lucjan Wyrwicz, Leszek Rychlewski posted to binding_sites_prediction by iaolier on 2009-06-03 11:37:20 as along with 1 person nickolay
	Use of Amino Acid Composition to Predict Ligand-Binding Sites [My Copy] Journal of Chemical Information and Modeling, Vol. 47, No. 2. (1 March 2007), pp. 400-406. by Shinji Soga, Hiroki Shirai, Masato Kobori, Noriaki Hirayama posted to binding_sites_prediction by iaolier on 2009-06-03 11:27:29 as along with 1 person nickolay
	ProMateus--an open research approach to protein-binding sites analysis. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by H. Neuvirth, U. Heinemann, D. Birnbaum, N. Tishby, G. Schreiber posted to binding_sites_prediction by iaolier on 2009-06-03 11:00:37 as along with 1 person marti
	Automated prediction of ligand-binding sites in proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Rodney Harris, Arthur J. Olson, David S. Goodsell posted to binding_sites_prediction protein_structure by iaolier on 2009-06-03 10:25:21 as along with 4 people oteri tjimenez carlescorbi RamuAnandakrishnan
	Composite Motifs Integrating Multiple Protein Structures Increase Sensitivity for Function Prediction [My Copy] In Computational Systems Bioinformatics Conference: CSB2007 (2007) by B. Y. Chen, D. H. Bryant, A. E. Cruess, et al.J. H. Bylund, V. Y. Fofanov, D. M. Kristensen, M. Kimmel, O. Lichtarge, L. E. Kavraki posted to functional_sites motifs protein_structure by iaolier on 2009-06-03 10:02:18 as
	A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation [My Copy] Proceedings of the National Academy of Sciences (28 December 2007), 0707684105. by Michal Brylinski, Jeffrey Skolnick posted to binding_sites_prediction functional_sites homology protein_structure by iaolier on 2009-06-03 09:46:59 as along with 2 people cjeans zwang
	Prediction of protein functional residues from sequence by probability density estimation [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 613-620. by J. D. Fischer, C. E. Mayer, J. Söding posted to functional_sites by iaolier on 2009-06-02 23:21:22 as along with 1 person GustavoLacerda
	Functional site prediction selects correct protein models [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 1. (2008), S13. by Vijayalakshmi Chelliah, William Taylor posted to functional_sites protein_structure by iaolier on 2009-06-02 23:10:24 as
	Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i105-111. by Rafael Najmanovich, Natalja Kurbatova, Janet Thornton posted to binding_sites_prediction protein_structure by iaolier on 2009-06-02 22:52:30 as along with 7 people krapnik ramensky apaydin tjimenez neils reyez nickolay
	Improving position-specific predictions of protein functional sites using phylogenetic motifs [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2308-2316. by Bahadur K. Dukka, Dennis R. Livesay posted to functional_sites phylogenetic_motifs by iaolier on 2009-06-02 22:47:56 as
	INTREPID--INformation-theoretic TREe traversal for Protein functional site IDentification [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2445-2452. by Sriram Sankararaman, Kimmen Sjolander posted to function_prediction functional_sites sequence_alignment by iaolier on 2009-06-02 22:44:23 as
	Protein Meta-Functional Signatures from Combining Sequence, Structure, Evolution, and Amino Acid Property Information [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000181. by Kai Wang, Jeremy A. Horst, Gong Cheng, David C. Nickle, Ram Samudrala posted to functional_sites machine_learning protein_structure web-based_tool by iaolier on 2009-06-02 22:41:30 as along with 2 people zwang aramesh2
	Structural descriptor database: a new tool for sequence based functional site prediction [My Copy] BMC Bioinformatics, Vol. 9 (25 November 2008), 492. by Juliana S. Bernardes, Jorge H. Fernandez, Ana T. Vasconcelos posted to function_prediction functional_sites web-based_tool by iaolier on 2009-06-02 22:35:53 as along with 2 people Publicase Md_2007
	Predicting RNA-binding sites of proteins using support vector machines and evolutionary information [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008), S6. by Cheng W. Cheng, Emily Su, Jenn K. Hwang, Ting Y. Sung, Wen L. Hsu posted to rna-binding_site svm by iaolier on 2009-06-02 22:32:22 as along with 3 people balewis zwang phoenixzxl
	Sequence-based Prediction of Protein Interaction Sites with an Integrative Method. [My Copy] Bioinformatics (Oxford, England) (19 January 2009) by Xue-Wen W. Chen, Jong Cheol C. Jeong posted to functional_sites protein-protein_interaction by iaolier on 2009-06-02 21:58:40 as along with 2 people carlosjavierna grahamc
	FINDSITE: a combined evolution/structure-based approach to protein function prediction [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 378-391. by Jeffrey Skolnick, Michal Brylinski posted to binding_sites_prediction functional_sites protein_structure web-based_tool by iaolier on 2009-06-02 21:51:31 as along with 8 people and 1 group davidmam jperkins reyez TRHvidsten dimka gwallau operon idoerg Orengo Group Journal Picks
	Improved residue contact prediction using support vector machines and a large feature set. [My Copy] BMC bioinformatics, Vol. 8 (02 April 2007), 113. by Jianlin Cheng, Pierre Baldi posted to residue_contact svm by iaolier on 2009-06-02 17:05:56 as along with 3 people dfdong pjcite ndiaz
	HotPatch: a statistical approach to finding biologically relevant features on protein surfaces. [My Copy] Journal of molecular biology, Vol. 369, No. 3. (8 June 2007), pp. 863-879. by Frank K. Pettit, Emiko Bare, Albert Tsai, James U. Bowie posted to functional_sites machine_learning by iaolier on 2009-06-02 16:59:52 as along with 3 people ubcg08l bicko cjeans
	Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins [My Copy] BMC Bioinformatics, Vol. 8 (05 May 2007), 147. by Qiwen Dong, Xiaolong Wang, Lei Lin, Yi Guan posted to binding_sites_prediction by iaolier on 2009-06-02 16:37:37 as along with 4 people nickolay bicko zwang marti
	Prediction of Functional Sites Based on the Fuzzy Oil Drop Model [My Copy] PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e94. by Michał Brylinski, Katarzyna Prymula, Wiktor Jurkowski, et al.Marek Kochanczyk, Ewa Stawowczyk, Leszek Konieczny, Irena Roterman posted to functional_sites protein_structure by iaolier on 2009-06-02 16:07:12 as along with 3 people and 1 group tomjad Einat zwang structural_bioinformatics
	siteFiNDER\|3D: a web-based tool for predicting the location of functional sites in proteins [My Copy] Nucl. Acids Res., Vol. 35, No. suppl_2. (13 July 2007), pp. W489-494. by Axel C. Innis posted to functional_sites protein_structure web-based_tool by iaolier on 2009-06-02 16:03:20 as
	Clustering protein environments for function prediction: finding PROSITE motifs in 3D [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 4. (2007), S10. by Sungroh Yoon, Jessica Ebert, Eui Y. Chung, Giovanni De Micheli, Russ Altman posted to function_prediction functional_sites machine_learning motifs protein_structure by iaolier on 2009-06-02 15:53:59 as along with 3 people and 1 group HawkinsJohnC shadowman Einat structural_bioinformatics
	Using structural motif descriptors for sequence-based binding site prediction. [My Copy] BMC bioinformatics, Vol. 8 Suppl 4 (2007) by Andreas Henschel, Christof Winter, Wan Kyu K. Kim, Michael Schroeder posted to binding_sites_prediction machine_learning motifs protein_structure by iaolier on 2009-06-02 15:41:08 as along with 3 people winterschlaefer tjimenez Evangelia
	A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites. [My Copy] BMC Bioinformatics, Vol. 8 Suppl 4 (2007) by L. Xie, P. E. Bourne posted to binding_sites_prediction protein_structure by iaolier on 2009-06-02 15:39:06 as along with 2 people tjimenez higueruelo
	Automatic generation of 3D motifs for classification of protein binding sites [My Copy] BMC Bioinformatics, Vol. 8 (30 August 2007), 321. by Jean-Christophe Nebel, Pawel Herzyk, David R. Gilbert posted to binding_sites_prediction motifs protein_classification by iaolier on 2009-06-02 15:25:31 as along with 4 people shadowman carlescorbi Evangelia Minty
	A computational strategy for the prediction of functional linear peptide motifs in proteins [My Copy] Bioinformatics (31 October 2007), btm524. by Holger Dinkel, Heinrich Sticht posted to motifs by iaolier on 2009-06-02 15:20:01 as along with 2 people cjeans Evangelia
	Accurate prediction of protein\|[ndash]\|protein interactions from sequence alignments using a Bayesian method [My Copy] Molecular Systems Biology, Vol. 4 (12 February 2008) by Lukas Burger, Erik van Nimwegen posted to binding_sites_prediction machine_learning protein protein-protein_interaction sequence_alignment by iaolier on 2009-06-02 15:14:16 as along with 14 people robfsouza raik sjcockell kengg grahamc laughcry zwang biomcgary cabbagezs roys cdeane gjuggler phoenixzxl pansapiens
	A machine learning approach for the identification of odorant binding proteins from sequence-derived properties [My Copy] BMC Bioinformatics, Vol. 8 (19 September 2007), 351. by Ganesan Pugalenthi, Ke Tang, P. N. Suganthan, G. Archunan, R. Sowdhamini posted to protein machine_learning binding_sites_prediction by iaolier on 2009-06-02 15:03:18 as along with 1 person maximilianh

Note: You may cite this page as: http://www.citeulike.org/user/iaolier

binding_sites_prediction	20
functional_sites	18
protein_structure	18
machine_learning	8
sequence_alignment	6
function_prediction	5
motifs	5
web-based_tool	5
protein-protein_interaction	3
conservation_score	2
homology	2
mc	2
primary_sequence	2
protein	2
protein_classification	2
residue_contact	2
svm	2
evolution	1
hmm	1
markov_chain_monte_carlo	1
monte_carlo_selection	1
neural_networks	1
phylogenetic_motifs	1
rna-binding_site	1

iaolier's library 46 articles Export

iaolier's tags