idonaldson's Brown:M [4 articles] Export

Recent papers posted to idonaldson's library by the author Brown:M. You can also see everyone's Brown:M.

	Model-based analysis of tiling-arrays for ChIP-chip [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 33. (15 August 2006), pp. 12457-12462. by W. Evan Johnson, Wei Li, Clifford A. Meyer, et al.Raphael Gottardo, Jason S. Carroll, Myles Brown, X. Shirley Liu posted to chip-chip tool by idonaldson on 2009-04-08 09:22:55 as along with 11 people and 1 group ashishanand siebert mcm rgottardo GeeSharpMinor kengg nicholso talponer caseybrown bertelsen bozdagd Plantandetc
	Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers. [My Copy] Genome research (7 January 2009) by Jerome Eeckhoute, Mathieu Lupien, Clifford Meyer, et al.Michael Verzi, Ramesh Shivdasani, X Shirley S. Liu, Myles Brown posted to chromatin enhancer forkhead by idonaldson on 2009-01-15 09:52:48 as along with 4 people absterga fenghezi djkt JustinCrocker
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to chip-seq tool by idonaldson on 2008-09-22 11:37:23 as along with 25 people and 2 groups torfinnnome hzoltan Vincent_Rouilly darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz mcm polivares gdb ghattem yadadi djkt stajich mdperry fpattyn bcondon caseybrown kengg SIMR bioinformatics Mycology
	Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets [My Copy] Genome Research, Vol. 18, No. 3. (7 March 2008), pp. 393-403. by David S. Johnson, Wei Li, D. Benjamin Gordon, et al.Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S. Carroll, Myles Brown, Paul Flicek, Christoph M. Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J. Farnham, Philipp Kapranov, David A. Nix, Thomas R. Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland D. Green, Jun S. Song, Scott A. Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D. Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C. Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P. Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M. Myers, Jason D. Lieb, X. Shirley Liu posted to chip-chip comparison by idonaldson on 2008-02-12 17:07:30 as along with 12 people and 2 groups fenghezi jfr kengg djkt xiaobeizhao cabbagezs caseybrown magusina lp2 stajich gracio gdb BergmanLab Mycology

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tool	115
tfbs	54
motif-discovery	31
chip-seq	29
chip-chip	28
ngs	26
cis-regulation	25
crm	22
motif	19
mapping	15
review	15
conserved	15
short-read	14
promoter	13
yeast	11
networks	10
visualisation	10
me	9
nucleosome	9
prediction	8
expression	8
comparison	8
regulation	7
human	7
method	7
matrix	7
te	7
tissue-specific	6
transcription-factor	6
gene	6
go	6
position	5
tss	5
genome	5
alignment	5
binding	5
forkhead	5
microarray	4
text-mining	4
sequence	4
gene-set	4
analysis	4
cancer	4
primer	4
gottgens	4
statistics	4
combinatorial	4
chromatin	4
mouse	3
histone	3
rna-seq	3
genome_browser	3
srf	3
scanning	3
modification	3
orthologues	3
comparative_genomics	3
database	3
network	3
nfr	2
cooperative	2
re1	2
exon-array	2
structural	2
multiple	2
bayesian	2
creb	2
evolution	2
regulatory_elements	2
3c	2
discovery	2
distribution	2
epitope-tagging	2
peak_detection	2
hmm	2
mirna	2
spacing	2
list	2
flag	2
haematopoiesis	2
browser	2
methylation	1
ccds	1
ebox	1
drosophila	1
error	1
plasmodium	1
fdr	1
motifs	1
functional	1
topology	1
p53	1
protein-coding	1
compression	1
enhancer	1
apoptosis	1
deconvolution	1
myod	1
transgenic	1
muscle	1
journal	1
name	1
dna-interactions	1
over-optimism	1
chimp	1
ncrna	1
ensembl	1
polymerase	1
organisation	1
kinase	1
r	1
retrieve	1
snp	1
pbm	1
rsat	1
fungi	1
assembler	1
stem-cells	1
lyl	1
genomic	1
scoring	1
interaction	1
chromosome	1
insulator	1
cpg	1
roc	1
non-coding	1
bro	1
5c	1
chromosome-territory	1
priner	1
smad	1
enrichment	1
mps	1
neighbouring	1
protein-array	1
ssr	1
nactem	1
periodicity	1
nimblegen	1
artefact	1
procedure	1
pathway	1
ctcf	1
phosphorylation	1
housekeeping	1
specificity	1
ribosome	1
yy1	1
chromosome-kissing	1
multiple-testing	1
phylogenetic	1
carg	1
random	1
gastric	1
promoter-sharing	1
evolutionary_constraint	1
galaxy	1
indirect	1
g4	1
sumoylation	1
transcription	1
ucsc	1
5utr	1
transposon-free-regions	1
annotation	1
footprint	1
protein	1
ecm	1
halo-chip-chip	1

idonaldson's Brown:M [4 articles] Export

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