idonaldson's Farnham:PJ [7 articles] Export

Recent papers posted to idonaldson's library by the author Farnham:PJ. You can also see everyone's Farnham:PJ.

	W-ChIPMotifs: a web application tool for de novo motif discovery from ChIP-based high-throughput data [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3191-3193. by Victor X. Jin, Jeff Apostolos, Naga S. Nagisetty, Peggy J. Farnham posted to tool ngs motif-discovery by idonaldson on 2009-11-18 09:50:10 as along with 4 people bsamal farhat nklee maximilianh
	Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data. [My Copy] Nucleic acids research (11 November 2009), gkp1012. by Kimberly R. Blahnik, Lei Dou, Henriette O'Geen, et al.Timothy McPhillips, Xiaoqin Xu, Alina R. Cao, Sushma Iyengar, Charles M. Nicolet, Bertram Ludäscher, Ian Korf, Peggy J. Farnham posted to visualisation peak_detection chip-seq by idonaldson on 2009-11-16 09:43:43 as along with 1 person fenghezi
	Insights from genomic profiling of transcription factors. [My Copy] Nature reviews. Genetics, Vol. 10, No. 9. (11 September 2009), pp. 605-616. by Peggy J. Farnham posted to review chip-seq by idonaldson on 2009-08-17 09:41:09 as along with 19 people and 2 groups provero bsamal heliopais inesdesantiago fenghezi nklee samanthacooper fpattyn druvus frohike stubrown qayub megraw TRHvidsten mkiyer ericrpaquet ilyashl jbhiatt danmaclean Journal picks Chinnaiyan Lab
	E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites [My Copy] Genome Research, Vol. 18, No. 11. (3 November 2008), pp. 1763-1777. by Alina Rabinovich, Victor X. Jin, Roman Rabinovich, Xiaoqin Xu, Peggy J. Farnham posted to binding chip-chip specificity tfbs by idonaldson on 2008-10-13 09:21:25 as along with 1 person fenghezi
	Genome-scale ChIP-chip analysis using 10,000 human cells. [My Copy] Biotechniques, Vol. 43, No. 6. (December 2007), pp. 791-797. by L. G. Acevedo, A. L. Iniguez, H. L. Holster, X. Zhang, R. Green, P. J. Farnham posted to chip-chip method by idonaldson on 2008-02-12 17:08:47 as along with 2 people Petersarkies guhjy
	Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets [My Copy] Genome Research, Vol. 18, No. 3. (7 March 2008), pp. 393-403. by David S. Johnson, Wei Li, D. Benjamin Gordon, et al.Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S. Carroll, Myles Brown, Paul Flicek, Christoph M. Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J. Farnham, Philipp Kapranov, David A. Nix, Thomas R. Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland D. Green, Jun S. Song, Scott A. Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D. Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C. Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P. Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M. Myers, Jason D. Lieb, X. Shirley Liu posted to chip-chip comparison by idonaldson on 2008-02-12 17:07:30 as along with 12 people and 2 groups fenghezi jfr kengg djkt xiaobeizhao cabbagezs caseybrown magusina lp2 stajich gracio gdb BergmanLab Mycology
	A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray dataâA case study using E2F1 [My Copy] Genome Res In Genome Research, Vol. 16, No. 12. (19 December 2006), pp. 1585-1595. by Victor X. Jin, Alina Rabinovich, Sharon L. Squazzo, Roland Green, Peggy J. Farnham posted to chip-chip crm tfbs tool by idonaldson on 2007-11-08 08:50:56 as along with 3 people bsamal aprasad jfr

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tool	114
tfbs	54
motif-discovery	31
chip-chip	26
chip-seq	26
cis-regulation	25
ngs	24
crm	22
motif	19
conserved	15
review	15
mapping	15
short-read	14
promoter	13
yeast	11
networks	10
visualisation	10
me	9
nucleosome	9
prediction	8
expression	8
human	7
te	7
matrix	7
regulation	7
comparison	7
method	7
tissue-specific	6
transcription-factor	6
gene	6
go	6
alignment	5
genome	5
forkhead	5
position	5
binding	5
tss	5
gottgens	4
analysis	4
gene-set	4
cancer	4
text-mining	4
combinatorial	4
microarray	4
primer	4
sequence	4
chromatin	4
statistics	4
mouse	3
comparative_genomics	3
scanning	3
modification	3
rna-seq	3
histone	3
network	3
database	3
orthologues	3
genome_browser	3
srf	3
nfr	2
distribution	2
exon-array	2
structural	2
cooperative	2
bayesian	2
3c	2
regulatory_elements	2
discovery	2
creb	2
hmm	2
list	2
mirna	2
haematopoiesis	2
evolution	2
re1	2
multiple	2
browser	2
spacing	2
annotation	1
footprint	1
protein	1
ecm	1
halo-chip-chip	1
methylation	1
ccds	1
ebox	1
drosophila	1
error	1
plasmodium	1
motifs	1
fdr	1
topology	1
p53	1
protein-coding	1
compression	1
enhancer	1
apoptosis	1
deconvolution	1
myod	1
transgenic	1
muscle	1
journal	1
functional	1
name	1
dna-interactions	1
over-optimism	1
chimp	1
ncrna	1
ensembl	1
polymerase	1
organisation	1
kinase	1
r	1
retrieve	1
snp	1
pbm	1
rsat	1
fungi	1
assembler	1
stem-cells	1
lyl	1
genomic	1
scoring	1
interaction	1
chromosome	1
insulator	1
cpg	1
roc	1
non-coding	1
bro	1
5c	1
chromosome-territory	1
priner	1
smad	1
enrichment	1
mps	1
neighbouring	1
protein-array	1
ssr	1
nactem	1
periodicity	1
nimblegen	1
artefact	1
procedure	1
pathway	1
ctcf	1
phosphorylation	1
housekeeping	1
specificity	1
ribosome	1
yy1	1
peak_detection	1
chromosome-kissing	1
multiple-testing	1
phylogenetic	1
carg	1
random	1
gastric	1
promoter-sharing	1
evolutionary_constraint	1
galaxy	1
indirect	1
g4	1
sumoylation	1
transcription	1
ucsc	1
5utr	1
transposon-free-regions	1

idonaldson's Farnham:PJ [7 articles] Export

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