idonaldson's chip-seq [25 articles] Export

Recent papers added to idonaldson's library classified by the tag chip-seq. You can also see everyone's chip-seq.

	Human-specific transcriptional regulation of CNS development genes by FOXP2. [My Copy] Nature, Vol. 462, No. 7270. (12 November 2009), pp. 213-217. by Genevieve Konopka, Jamee M. Bomar, Kellen Winden, et al.Giovanni Coppola, Zophonias O. Jonsson, Fuying Gao, Sophia Peng, Todd M. Preuss, James A. Wohlschlegel, Daniel H. Geschwind posted to forkhead chip-seq by idonaldson on 2009-11-23 13:50:46 as along with 6 people and 1 group provero jeremymiller Geknitics qayub yyfwuhan djkt Journal picks
	Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data. [My Copy] Nucleic acids research (11 November 2009), gkp1012. by Kimberly R. Blahnik, Lei Dou, Henriette O'Geen, et al.Timothy McPhillips, Xiaoqin Xu, Alina R. Cao, Sushma Iyengar, Charles M. Nicolet, Bertram Ludäscher, Ian Korf, Peggy J. Farnham posted to visualisation peak_detection chip-seq by idonaldson on 2009-11-16 09:43:43 as along with 1 person fenghezi
	Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression [My Copy] Genome Research, Vol. 19, No. 12. (3 December 2009), pp. 2172-2184. by Yong Cheng, Weisheng Wu, Swathi Ashok Kumar, et al.Duonan Yu, Wulan Deng, Tamara Tripic, David C. King, Kuan-Bei Chen, Ying Zhang, Daniela Drautz, Belinda Giardine, Stephan C. Schuster, Webb Miller, Francesca Chiaromonte, Yu Zhang, Gerd A. Blobel, Mitchell J. Weiss, Ross C. Hardison posted to chip-seq by idonaldson on 2009-11-05 11:01:42 as along with 2 people polivares djkt
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to tool ngs chip-seq by idonaldson on 2009-09-28 10:30:42 as along with 11 people and 4 groups Vincent_Rouilly tonamswish dswan fenghezi inesdesantiago polivares mkiyer druvus stajich humburg rschulz Bioinformatics JLab BergmanLab Mycology
	The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development. [My Copy] Blood, Vol. 113, No. 22. (28 May 2009), pp. 5456-5465. by Nicola K. Wilson, Diego Miranda-Saavedra, Sarah Kinston, et al.Nicolas Bonadies, Samuel D. Foster, Fernando Calero-Nieto, Mark A. Dawson, Ian J. Donaldson, Stephanie Dumon, Jonathan Frampton, Rekin's Janky, Xiao-Hong H. Sun, Sarah A. Teichmann, Andrew J. Bannister, Berthold Göttgens posted to ngs me gottgens chip-seq by idonaldson on 2009-09-10 14:43:46 as
	ID1 promotes expansion and survival of primary erythroid cells and is a target of JAK2V617F-STAT5 signaling. [My Copy] Blood, Vol. 114, No. 9. (27 August 2009), pp. 1820-1830. by Andrew D. Wood, Edwin Chen, Ian J. Donaldson, et al.Shilpa Hattangadi, Karly A. Burke, Mark A. Dawson, Diego Miranda-Saavedra, Harvey F. Lodish, Anthony R. Green, Berthold Göttgens posted to ngs me gottgens chip-seq by idonaldson on 2009-09-10 14:42:52 as
	ChIP-seq: advantages and challenges of a maturing technology. [My Copy] Nature reviews. Genetics, Vol. 10, No. 10. (08 October 2009), pp. 669-680. by Peter J. Park posted to review ngs chip-seq by idonaldson on 2009-09-10 11:45:38 as along with 24 people and 6 groups akakak hzoltan dchughes RyuOgawa heliopais giovenko inesdesantiago pradiptaray dakelley clearbluespring akundaje rdiaz kimorley leliavski humburg reyez qayub fenghezi tonamswish robertrentzsch polivares rschulz cvaldes danmaclean Journal picks Orengo Group Journal Picks JLab BergmanLab CTCF Chromatin
	CEAS: cis-regulatory element annotation system [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2605-2606. by Hyunjin Shin, Tao Liu, Arjun K. Manrai, X. Shirley Liu posted to tool chip-seq chip-chip by idonaldson on 2009-08-24 10:26:34 as along with 6 people bsamal maximilianh druvus ewilban1 guhjy nuin
	Insights from genomic profiling of transcription factors. [My Copy] Nature reviews. Genetics, Vol. 10, No. 9. (11 September 2009), pp. 605-616. by Peggy J. Farnham posted to review chip-seq by idonaldson on 2009-08-17 09:41:09 as along with 19 people and 2 groups provero bsamal heliopais inesdesantiago fenghezi nklee samanthacooper fpattyn druvus frohike stubrown qayub megraw TRHvidsten mkiyer ericrpaquet ilyashl jbhiatt danmaclean Journal picks Chinnaiyan Lab
	Extracting transcription factor targets from ChIP-Seq data [My Copy] Nucl. Acids Res., Vol. 37, No. 17. (1 September 2009), e113. by Geetu Tuteja, Peter White, Jonathan Schug, Klaus H. Kaestner posted to tool tfbs chip-seq by idonaldson on 2009-08-11 13:47:54 as along with 14 people and 4 groups hzoltan Vincent_Rouilly mfgreen ewilban1 guhjy mkiyer rschulz fenghezi clearbluespring thegoose robeirne inesdesantiago malcook polivares Chinnaiyan Lab SIMR bioinformatics BergmanLab Journal picks
	Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing [My Copy] Nucl. Acids Res., Vol. 36, No. 14. (1 August 2008), pp. 4549-4564. by Elizabeth D. Wederell, Mikhail Bilenky, Rebecca Cullum, et al.Nina Thiessen, Melis Dagpinar, Allen Delaney, Richard Varhol, Yongjun Zhao, Thomas Zeng, Bridget Bernier, Matthew Ingham, Martin Hirst, Gordon Robertson, Marco A. Marra, Steven Jones, Pamela A. Hoodless posted to chip-seq forkhead by idonaldson on 2009-08-10 10:58:33 as
	Chromatin immunoprecipitation sequencing (ChIP-Seq) on the SOLiD[trade] system [My Copy] Nat Meth, Vol. 6, No. 4. (April 2009) by Anjali Shah posted to chip-seq forkhead by idonaldson on 2009-07-31 15:37:59 as
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted to chip-seq tool by idonaldson on 2009-07-23 12:00:53 as along with 18 people and 2 groups hzoltan n00c darian michaelbarton inesdesantiago gdb ewilban1 tonamswish guhjy kmdaily cassj fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad JLab BergmanLab
	FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 15. (1 August 2008), pp. 1729-1730. by Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew Bainbridge, Steven J. M. Jones posted to chip-seq tool by idonaldson on 2009-06-03 15:07:07 as along with 20 people and 2 groups torfinnnome hzoltan darian n00c polivares tonamswish ewilban1 humburg Thaverkamp natstreet druvus stajich cassj WanderingAengus rschulz jfr sconlan reyez guhjy vega Bioinformatics Mycology
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted to chip-chip chip-seq hmm by idonaldson on 2009-05-26 10:32:31 as along with 13 people and 1 group bsamal jfr tonamswish rdiaz fpattyn jcbarret guhjy hendrik85 inesdesantiago nklee polivares ewilban1 humburg Journal picks
	Visualization of genomic data with the Hilbert curve [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1231-1235. by Simon Anders posted to chip-chip chip-seq genomic tool visualisation by idonaldson on 2009-03-23 17:05:05 as along with 15 people and 1 group Yanno jfr jandot ewilban1 polivares inesdesantiago djkt behindtherabbit guhjy humburg Thaverkamp svenrahmann jmeppley rdiaz paszkows BergmanLab
	Using ChIP-chip and ChIP-seq to study the regulation of gene expression: genome-wide localization studies reveal widespread regulation of transcription elongation. [My Copy] Methods (San Diego, Calif.), Vol. 48, No. 4. (9 August 2009), pp. 398-408. by Daniel A. Gilchrist, David C. Fargo, Karen Adelman posted to chip-chip chip-seq expression gene method by idonaldson on 2009-03-16 10:37:04 as along with 5 people fpattyn ewilban1 guhjy inesdesantiago sebastien_vigneau
	ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. [My Copy] Methods (San Diego, Calif.), Vol. 48, No. 3. (7 July 2009), pp. 240-248. by Dominic Schmidt, Michael D. Wilson, Christiana Spyrou, Gordon D. Brown, James Hadfield, Duncan T. Odom posted to chip-seq method by idonaldson on 2009-03-16 10:32:04 as along with 8 people samanthacooper fpattyn roys guhjy gdb ewilban1 rschulz clearbluespring
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted to chip-seq tissue-specific by idonaldson on 2009-02-12 09:32:17 as along with 23 people and 2 groups hzoltan tonamswish ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG bertelsen oelemento rpatward cajunsushi WanderingAengus absterga provero cassj anphony dpollard caseybrown biomcgary xingxu djkt RockmanLab cis-regulatory-evolution
	Design and analysis of ChIP-seq experiments for DNA-binding proteins. [My Copy] Nature biotechnology, Vol. 26, No. 12. (16 December 2008), pp. 1351-1359. by Peter V. Kharchenko, Michael Y. Tolstorukov, Peter J. Park posted to analysis chip-seq by idonaldson on 2009-02-05 11:48:49 as along with 19 people and 2 groups hzoltan stubrown guhjy gdb tonamswish ewilban1 coela ekotelnikova jfr floatingpoint inesdesantiago WanderingAengus vplagnol xwbcn fpattyn mutagenic kengg rschulz ghattem KCL & UCL Bioinformatics SIMR bioinformatics
	PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. [My Copy] Nature biotechnology, Vol. 27, No. 1. (04 January 2009), pp. 66-75. by Joel Rozowsky, Ghia Euskirchen, Raymond K. Auerbach, et al.Zhengdong D. Zhang, Theodore Gibson, Robert Bjornson, Nicholas Carriero, Michael Snyder, Mark B. Gerstein posted to chip-seq tool by idonaldson on 2009-01-13 13:17:06 as along with 19 people and 1 group bedo hzoltan fpattyn gdb huali ewilban1 fenghezi smiddha jfr bertelsen JeremyZucker cassj inesdesantiago dakelley ghattem abizar polivares WanderingAengus guhjy SIMR bioinformatics
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to chip-seq tool by idonaldson on 2008-09-22 11:37:23 as along with 24 people and 2 groups hzoltan Vincent_Rouilly darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz mcm polivares gdb ghattem yadadi djkt stajich mdperry fpattyn bcondon caseybrown kengg SIMR bioinformatics Mycology
	Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data [My Copy] Nature Methods, Vol. 5, No. 9. (17 August 2008), pp. 829-834. by Anton Valouev, David S. Johnson, Andreas Sundquist, et al.Catherine Medina, Elizabeth Anton, Serafim Batzoglou, Richard M. Myers, Arend Sidow posted to chip-seq tool by idonaldson on 2008-09-09 11:33:03 as along with 20 people and 1 group bsamal jwfoley ewilban1 nklee bertelsen stajich smiddha clearbluespring WanderingAengus polivares ptrobajo mdperry gdb megraw kengg alhufton guhjy kjglennie bryankr maximilianh Mycology
	Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. [My Copy] Nucleic acids research, Vol. 36, No. 16. (6 September 2008), pp. 5221-5231. by R. Jothi, S. Cuddapah, A. Barski, K. Cui, K. Zhao posted to chip-seq tool by idonaldson on 2008-09-09 11:23:42 as along with 10 people tonamswish talponer ewilban1 polivares guhjy mcm Eroslavochka inesdesantiago mdperry sebastien_vigneau
	Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies [My Copy] Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 898-909. by Ghia M. Euskirchen, Joel S. Rozowsky, Chia-Lin Wei, et al.Wah H. Lee, Zhengdong D. Zhang, Stephen Hartman, Olof Emanuelsson, Viktor Stolc, Sherman Weissman, Mark B. Gerstein, Yijun Ruan, Michael Snyder posted to chip-chip chip-seq comparison by idonaldson on 2008-02-20 14:32:15 as along with 6 people and 4 groups kengg jtaylor ghattem epigenetics blobbybirdman isimpson Bioinformatics Plantandetc UH - Computational Biology BergmanLab

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tool	112
tfbs	54
motif-discovery	31
chip-chip	26
chip-seq	25
cis-regulation	25
ngs	22
crm	22
motif	19
review	15
conserved	15
mapping	14
short-read	13
promoter	13
yeast	11
visualisation	10
networks	10
nucleosome	9
me	9
prediction	8
expression	8
comparison	7
matrix	7
human	7
method	7
te	7
regulation	7
tissue-specific	6
transcription-factor	6
gene	6
go	6
alignment	5
binding	5
forkhead	5
tss	5
position	5
genome	5
text-mining	4
chromatin	4
cancer	4
statistics	4
combinatorial	4
analysis	4
microarray	4
gene-set	4
sequence	4
gottgens	4
network	3
srf	3
primer	3
scanning	3
histone	3
rna-seq	3
database	3
modification	3
mouse	3
genome_browser	3
orthologues	3
comparative_genomics	3
bayesian	2
creb	2
cooperative	2
mirna	2
hmm	2
exon-array	2
structural	2
distribution	2
regulatory_elements	2
nfr	2
discovery	2
3c	2
multiple	2
re1	2
evolution	2
haematopoiesis	2
list	2
spacing	2
browser	2
cpg	1
roc	1
non-coding	1
rsat	1
bro	1
halo-chip-chip	1
5c	1
pbm	1
chromosome-territory	1
snp	1
smad	1
enrichment	1
protein-coding	1
mps	1
retrieve	1
neighbouring	1
protein-array	1
kinase	1
organisation	1
polymerase	1
methylation	1
ssr	1
ensembl	1
ccds	1
ncrna	1
nactem	1
periodicity	1
ebox	1
nimblegen	1
artefact	1
chimp	1
procedure	1
over-optimism	1
drosophila	1
dna-interactions	1
pathway	1
motifs	1
ctcf	1
error	1
phosphorylation	1
housekeeping	1
specificity	1
name	1
ribosome	1
yy1	1
functional	1
peak_detection	1
chromosome-kissing	1
journal	1
fdr	1
phylogenetic	1
plasmodium	1
carg	1
muscle	1
random	1
gastric	1
promoter-sharing	1
evolutionary_constraint	1
galaxy	1
indirect	1
transgenic	1
g4	1
sumoylation	1
transcription	1
p53	1
myod	1
deconvolution	1
apoptosis	1
topology	1
ucsc	1
5utr	1
enhancer	1
transposon-free-regions	1
annotation	1
compression	1
footprint	1
lyl	1
genomic	1
scoring	1
protein	1
stem-cells	1
interaction	1
chromosome	1
assembler	1
ecm	1
fungi	1
insulator	1

idonaldson's chip-seq [25 articles] Export

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