idonaldson's yeast [11 articles] Export

Recent papers added to idonaldson's library classified by the tag yeast. You can also see everyone's yeast.

	A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome [My Copy] Genome Biology, Vol. 10, No. 10. (2009), R109. by Cizhong Jiang, B. Franklin Pugh posted to yeast position nucleosome by idonaldson on 2009-11-03 10:10:18 as along with 3 people venancio aalibes lp2
	High-resolution nucleosome mapping reveals transcription-dependent promoter packaging [My Copy] Genome Research (21 October 2009) by Assaf Weiner, Amanda Hughes, Moran Yassour, Oliver J. Rando, Nir Friedman posted to yeast nucleosome mapping by idonaldson on 2009-10-22 09:23:52 as along with 3 people and 1 group venancio natstreet sebastien_vigneau Epigenetics
	A high-resolution atlas of nucleosome occupancy in yeast. [My Copy] Nature genetics, Vol. 39, No. 10. (16 October 2007), pp. 1235-1244. by William Lee, Desiree Tillo, Nicolas Bray, et al.Randall H. Morse, Ronald W. Davis, Timothy R. Hughes, Corey Nislow posted to yeast nfr by idonaldson on 2009-09-10 09:15:32 as along with 6 people emptyhb hagechouchin443 waszak aalibes epigenetics siebert
	Dissecting Nucleosome Free Regions by a Segmental Semi-Markov Model [My Copy] PLoS ONE, Vol. 4, No. 3. (6 March 2009), e4721. by Wei Sun, Wei Xie, Feng Xu, Michael Grunstein, Ker-Chau Li posted to yeast nfr by idonaldson on 2009-09-01 15:53:13 as along with 1 person and 1 group cisevol BergmanLab
	Explicit equilibrium modeling of transcription-factor binding and gene regulation. [My Copy] Genome biology, Vol. 6, No. 10. (2005) by J. A. Granek, N. D. Clarke posted to motif-discovery tool yeast by idonaldson on 2009-06-09 14:52:13 as along with 2 people provero emptyhb
	A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. [My Copy] Molecular cell, Vol. 32, No. 6. (26 December 2008), pp. 878-887. by G. Badis, E. T. Chan, H. van Bakel, et al.L. Pena-Castillo, D. Tillo, K. Tsui, C. D. Carlson, A. J. Gossett, M. J. Hasinoff, C. L. Warren, M. Gebbia, S. Talukder, A. Yang, S. Mnaimneh, D. Terterov, D. Coburn, A. Li Yeo, Z. X. Yeo, N. D. Clarke, J. D. Lieb, A. Z. Ansari, C. Nislow, T. R. Hughes posted to motif nucleosome tfbs yeast by idonaldson on 2009-06-08 09:09:31 as along with 1 person aalibes
	Dynamic reprogramming of transcription factors to and from the subtelomere. [My Copy] Genome research, Vol. 19, No. 6. (16 June 2009), pp. 1014-1025. by H. C. Mak, L. Pillus, T. Ideker posted to transcription-factor yeast by idonaldson on 2009-06-03 15:10:45 as along with 5 people and 1 group megraw HawkinsJohnC epigenetics JustinCrocker maximilianh BenosLab
	An improved map of conserved regulatory sites for Saccharomyces cerevisiae [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (7 March 2006), 113. by Kenzie Macisaac, Ting Wang, D. Benjamin Gordon, David Gifford, Gary Stormo, Ernest Fraenkel posted to conserved motif tfbs yeast by idonaldson on 2009-04-30 14:43:51 as along with 9 people roys tuck eckart_bindewald cconboy raiyar lusk nklee barwil kristallreiner
	Using Network Component Analysis to Dissect Regulatory Networks Mediated by Transcription Factors in Yeast [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (20 March 2009), e1000311. by Chun Ye, Simon J. Galbraith, James C. Liao, Eleazar Eskin posted to network tool yeast by idonaldson on 2009-03-23 17:03:09 as along with 5 people TRHvidsten svenrahmann dolchan rdiaz roys
	A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome [My Copy] Genome Research, Vol. 19, No. 3. (4 March 2009), pp. 360-371. by Bryan J. Venters, B. Franklin Pugh posted to organisation promoter yeast by idonaldson on 2009-03-04 09:43:14 as along with 6 people and 1 group venancio TheresaNiederberger cisevol inesdesantiago rdowell JustinCrocker BergmanLab
	Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes [My Copy] Genome Research, Vol. 19, No. 6. (1 June 2009), pp. 967-977. by Michael Y. Tolstorukov, Peter V. Kharchenko, Joseph A. Goldman, Robert E. Kingston, Peter J. Park posted to human nucleosome position yeast by idonaldson on 2009-02-27 14:46:16 as along with 3 people ashkelon13 hagechouchin443 humburg

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tool	115
tfbs	54
motif-discovery	31
chip-seq	29
chip-chip	28
ngs	26
cis-regulation	25
crm	22
motif	19
mapping	15
review	15
conserved	15
short-read	14
promoter	13
yeast	11
networks	10
visualisation	10
me	9
nucleosome	9
prediction	8
expression	8
comparison	8
regulation	7
human	7
method	7
matrix	7
te	7
tissue-specific	6
transcription-factor	6
gene	6
go	6
position	5
tss	5
genome	5
alignment	5
binding	5
forkhead	5
microarray	4
text-mining	4
sequence	4
gene-set	4
analysis	4
cancer	4
primer	4
gottgens	4
statistics	4
combinatorial	4
chromatin	4
mouse	3
histone	3
rna-seq	3
genome_browser	3
srf	3
scanning	3
modification	3
orthologues	3
comparative_genomics	3
database	3
network	3
nfr	2
cooperative	2
re1	2
exon-array	2
structural	2
multiple	2
bayesian	2
creb	2
evolution	2
regulatory_elements	2
3c	2
discovery	2
distribution	2
epitope-tagging	2
peak_detection	2
hmm	2
mirna	2
spacing	2
list	2
flag	2
haematopoiesis	2
browser	2
methylation	1
ccds	1
ebox	1
drosophila	1
error	1
plasmodium	1
fdr	1
motifs	1
functional	1
topology	1
p53	1
protein-coding	1
compression	1
enhancer	1
apoptosis	1
deconvolution	1
myod	1
transgenic	1
muscle	1
journal	1
name	1
dna-interactions	1
over-optimism	1
chimp	1
ncrna	1
ensembl	1
polymerase	1
organisation	1
kinase	1
r	1
retrieve	1
snp	1
pbm	1
rsat	1
fungi	1
assembler	1
stem-cells	1
lyl	1
genomic	1
scoring	1
interaction	1
chromosome	1
insulator	1
cpg	1
roc	1
non-coding	1
bro	1
5c	1
chromosome-territory	1
priner	1
smad	1
enrichment	1
mps	1
neighbouring	1
protein-array	1
ssr	1
nactem	1
periodicity	1
nimblegen	1
artefact	1
procedure	1
pathway	1
ctcf	1
phosphorylation	1
housekeeping	1
specificity	1
ribosome	1
yy1	1
chromosome-kissing	1
multiple-testing	1
phylogenetic	1
carg	1
random	1
gastric	1
promoter-sharing	1
evolutionary_constraint	1
galaxy	1
indirect	1
g4	1
sumoylation	1
transcription	1
ucsc	1
5utr	1
transposon-free-regions	1
annotation	1
footprint	1
protein	1
ecm	1
halo-chip-chip	1

idonaldson's yeast [11 articles] Export

idonaldson's tags