ihpark's library 37 articles Export

	Learning kernels from biological networks by maximizing entropy. [My Copy] Bioinformatics, Vol. 20 Suppl 1 (4 August 2004) by K. Tsuda, W. S. Noble posted to kernel by ihpark on 2008-12-26 04:00:50 as along with 5 people and 4 groups ajbattle bioinfo jwdietrich carlk jccaicedo MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
	MMG: a probabilistic tool to identify submodules of metabolic pathways. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 8. (15 April 2008), pp. 1078-1084. by Guido Sanguinetti, Josselin Noirel, Phillip C. Wright posted to network by ihpark on 2008-10-27 08:01:13 as along with 7 people ptrobajo pauldobson roys bertelsen guhjy tmmurali mdstobbe
	Gene-set analysis and reduction [My Copy] Brief Bioinform, Vol. 10, No. 1. (1 January 2009), pp. 24-34. by Irina Dinu, John D. Potter, Thomas Mueller, et al.Qi Liu, Adeniyi J. Adewale, Gian S. Jhangri, Gunilla Einecke, Konrad S. Famulski, Philip Halloran, Yutaka Yasui posted to gene_set by ihpark on 2008-10-27 06:23:02 as along with 9 people zufar jfr ipark-kaist renatomilani shikin tmmurali guhjy nuin ptrobajo
	Gene-set approach for expression pattern analysis [My Copy] Brief Bioinform, Vol. 9, No. 3. (1 May 2008), pp. 189-197. by Dougu Nam, Seon-Young Kim posted to gene_set by ihpark on 2008-10-27 06:22:37 as along with 18 people bertelsen srp33 tonamswish kemalpak shikin ipark-kaist ptrobajo guhjy seemu thomaskelder lp2 giovenko AlexanderPico heliopais tmmurali yas beete klo
	How accurately can we control the FDR in analyzing microarray data? [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. 1730-1736. by S. H. Jung, W. Jang posted to deg by ihpark on 2008-10-26 08:46:59 as along with 2 people jfr justescaped
	Linear models and empirical bayes methods for assessing differential expression in microarray experiments. [My Copy] Statistical applications in genetics and molecular biology, Vol. 3, No. 1. (2004) by Gordon K. Smyth posted to deg by ihpark on 2008-10-26 08:23:12 as along with 19 people and 1 group schwalb shikin bertelsen jperkins zoex_99 ipark-kaist lwaldron paszkows isimpson Stew giovenko RMGraze maryee mayercd justescaped ugengma heliopais guhjy talponer Bioinformatics - CRUK
	Significance analysis of microarrays applied to the ionizing radiation response [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 9. (24 April 2001), pp. 5116-5121. by Virginia G. Tusher, Robert Tibshirani, Gilbert Chu posted to deg by ihpark on 2008-10-26 08:20:45 as along with 19 people jperkins ipark-kaist bertelsen daforerog marboe roys bassene frohike paszkows miguel jen_drake gpalidwor olympos ccr incovoma ugengma shikin askrajiv renatomilani
	Extensions to gene set enrichment. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 3. (1 February 2007), pp. 306-313. by Zhen Jiang, Robert Gentleman posted to statistics by ihpark on 2008-10-22 08:44:41 as along with 12 people and 1 group ptrobajo guhjy tonamswish ipark-kaist jfr aviad_work ealloza djkt waghsk heliopais giovenko magusina BioinfoCIPF
	Biclustering Algorithms: A Survey [My Copy] Handbook of Computational Molecular Biology In Handbook of Computational Molecular Biology (2004) by A. Tanay, R. Sharan, R. Shamir edited by Srinivas posted to biclustering by ihpark on 2008-10-22 06:54:38 as
	Discovering local structure in gene expression data: the order-preserving submatrix problem. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 10, No. 3-4. (2003), pp. 373-384. by Amir Ben-Dor, Benny Chor, Richard Karp, Zohar Yakhini posted to biclustering by ihpark on 2008-10-22 03:01:51 as along with 3 people ilyashl tvdbulck umit
	Biclustering algorithms for biological data analysis: a survey. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM In IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 1, No. 1. (r 2004), pp. 24-45. by Sara C. Madeira, Arlindo L. Oliveira posted to biclustering by ihpark on 2008-10-22 03:00:04 as along with 15 people meanerelk marti socwangnan jurgenjanes zufar ilyashl saman_vp tvdbulck librain dps bozdagd ealloza carlk chrisamiller tmmurali
	An efficient semi-unsupervised gene selection method via spectral biclustering [My Copy] NanoBioscience, IEEE Transactions on In NanoBioscience, IEEE Transactions on, Vol. 5, No. 2. (2006), pp. 110-114. by Bing Liu, C. Wan, Lipo Wang posted to biclustering by ihpark on 2008-10-22 02:54:15 as
	Group-Biomarkers Identification in Ovarian Carcinoma [My Copy] Acoustics, Speech and Signal Processing, 2007. ICASSP 2007. IEEE International Conference on In Acoustics, Speech and Signal Processing, 2007. ICASSP 2007. IEEE International Conference on, Vol. 1 (2007), pp. I-341-I-344. by A. B. Tchagang, A. H. Tewfik, A. P. N. Skubitz, K. Skubitz posted to biclustering by ihpark on 2008-10-22 02:53:00 as
	Coupled two-way clustering analysis of gene microarray data. [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 22. (24 October 2000), pp. 12079-12084. by G. Getz, E. Levine, E. Domany posted to biclustering by ihpark on 2008-10-21 06:36:52 as along with 5 people and 1 group zufar wnpx caporaso shikin tvdbulck biomedical-nlp
	Coupled two-way clustering analysis of breast cancer and colon cancer gene expression data [My Copy] Bioinformatics, Vol. 19, No. 9. (12 June 2003), pp. 1079-1089. by Gad Getz, Hilah Gal, Itai Kela, Daniel A. Notterman, Eytan Domany posted to biclustering by ihpark on 2008-10-21 06:36:31 as along with 1 person vphan
	A systematic comparison and evaluation of biclustering methods for gene expression data [My Copy] Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1122-1129. by Amela Prelic, Stefan Bleuler, Philip Zimmermann, et al.Anja Wille, Peter Buhlmann, Wilhelm Gruissem, Lars Hennig, Lothar Thiele, Eckart Zitzler posted to biclustering by ihpark on 2008-10-21 04:57:45 as along with 6 people barriot meanerelk jperkins ocs cassj bozdagd
	Computing the maximum similarity bi-clusters of gene expression data [My Copy] Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 50-56. by Liu, Xiaowen, Wang, Lusheng posted to biclustering by ihpark on 2008-10-21 04:52:42 as
	Robust and efficient identification of biomarkers by classifying features on graphs [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 2023-2029. by Taehyun Hwang, Hugues Sicotte, Ze Tian, et al.Baolin Wu, Jean-Pierre Kocher, Dennis A. Wigle, Vipin Kumar, Rui Kuang posted to biclustering by ihpark on 2008-10-20 11:56:38 as along with 10 people mdharsee frohike VGreiff guhjy jfr nuin GeeSharpMinor mitko AbnerCYH sg45653
	Shifting and scaling patterns from gene expression data [My Copy] Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3840-3845. by Jesus S. Aguilar-Ruiz posted to biclustering by ihpark on 2008-10-20 11:50:59 as along with 2 people meanerelk irinamohorianu
	Discovering statistically significant biclusters in gene expression data. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1 (2002) by Amos Tanay, Roded Sharan, Ron Shamir posted to biclustering by ihpark on 2008-10-20 07:21:11 as along with 12 people and 2 groups meanerelk marti tonamswish ggrot okarsligil lfriedl incovoma dps dragonrez tvdbulck carlk librain kdl Bioinformatics
	Human protein reference database--2006 update. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by G. R. Mishra, M. Suresh, K. Kumaran, et al.N. Kannabiran, S. Suresh, P. Bala, K. Shivakumar, N. Anuradha, R. Reddy, T. M. Raghavan, S. Menon, G. Hanumanthu, M. Gupta, S. Upendran, S. Gupta, M. Mahesh, B. Jacob, P. Mathew, P. Chatterjee, K. S. Arun, S. Sharma, K. N. Chandrika, N. Deshpande, K. Palvankar, R. Raghavnath, R. Krishnakanth, H. Karathia, B. Rekha, R. Nayak, G. Vishnupriya, H. G. Kumar, M. Nagini, G. S. Kumar, R. Jose, P. Deepthi, S. S. Mohan, T. K. Gandhi, H. C. Harsha, K. S. Deshpande, M. Sarker, T. S. Prasad, A. Pandey posted to database by ihpark on 2008-10-16 12:13:38 as along with 1 person TheresaNiederberger
	Biclustering of expression data. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 8 (2000), pp. 93-103. by Y. Cheng, G. M. Church posted to biclustering by ihpark on 2008-10-16 08:28:24 as along with 6 people meanerelk marti parnell wnpx tvdbulck dragonrez
	A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas [My Copy] Mol Syst Biol, Vol. 4 (12 February 2008) by Kartik M. Mani, Celine Lefebvre, Kai Wang, et al.Wei K. Lim, Katia Basso, Riccardo Dalla-Favera, Andrea Califano posted to method by ihpark on 2008-10-16 05:08:50 as along with 8 people ipark-kaist frohike jfr tmmurali ealloza shikin dap5087 dragonrez
	A role for cyclin A1 in mediating the autocrine expression of vascular endothelial growth factor in prostate cancer [My Copy] Oncogene, Vol. aop, No. current. by Barbara Wegiel, Anders Bjartell, Jenny Ekberg, et al.Virgil Gadaleanu, Cecilia Brunhoff, Jenny L. Persson, Jenny L. Persson posted to evidence by ihpark on 2008-10-14 14:09:24 as along with 1 person eisei
	Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2273-2280. by Andreas Buness, Ruprecht Kuner, Markus Ruschhaupt, Annemarie Poustka, Holger Sultmann, Achim Tresch posted to biclustering by ihpark on 2008-10-13 05:41:09 as along with 3 people and 1 group jfr rdiaz ealloza BioinfoCIPF
	Network-based classification of breast cancer metastasis. [My Copy] Molecular systems biology, Vol. 3 (16 October 2007) by Han-Yu Y. Chuang, Eunjung Lee, Yu-Tsueng T. Liu, Doheon Lee, Trey Ideker posted to copa by ihpark on 2008-10-06 06:32:13 as along with 29 people and 4 groups yaredo fesousa ipark-kaist aviad_work AbnerCYH zufar provero jmuhlich Zephyrus ggallone giovenko winterschlaefer isimpson bertelsen jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 saman_vp verdicchio Complex Networks Jarman Lab Bioinformatics GeneGo
	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted to copa by ihpark on 2008-10-06 06:11:24 as along with 45 people and 4 groups gbloeb miskar giovenko greg dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist bertelsen ajbattle jessopher askrajiv idonaldson chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
	Early detection of ovarian cancer using group biomarkers [My Copy] Mol Cancer Ther, Vol. 7, No. 1. (1 January 2008), pp. 27-37. by Alain B. Tchagang, Ahmed H. Tewfik, Melissa S. Derycke, Keith M. Skubitz, Amy P. Skubitz posted to copa by ihpark on 2008-10-06 05:09:34 as
	Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions [My Copy] Genome Research, Vol. 13, No. 4. (April 2003), pp. 703-716. by Yuval Kluger, Ronen Basri, Joseph T. Chang, Mark Gerstein posted to copa by ihpark on 2008-10-06 02:57:27 as
	MOST: detecting cancer differential gene expression [My Copy] Biostat (29 November 2007), kxm042. by Heng Lian posted to copa by ihpark on 2008-10-05 08:25:53 as along with 3 people ipark-kaist jfr aviad_work
	Cancer outlier differential gene expression detection. [My Copy] Biostatistics (4 October 2006) by Baolin Wu posted to copa by ihpark on 2008-10-05 08:25:07 as along with 3 people ipark-kaist jfr shigepong
	Outlier sums for differential gene expression analysis [My Copy] Biostatistics, Vol. 8, No. 1. (January 2007), pp. 2-8. by Tibshirani, Robert, Hastie, Trevor posted to copa by ihpark on 2008-10-05 08:24:26 as along with 1 person ipark-kaist
	Cancer outlier detection based on likelihood ratio test [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2193-2199. by Jianhua Hu posted to copa by ihpark on 2008-10-05 08:22:47 as along with 3 people guhjy jfr nuin
	Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer. [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 644-648. by S. A. Tomlins, D. R. Rhodes, S. Perner, et al.S. M. Dhanasekaran, R. Mehra, X. W. Sun, S. Varambally, X. Cao, J. Tchinda, R. Kuefer, C. Lee, J. E. Montie, R. B. Shah, K. J. Pienta, M. A. Rubin, A. M. Chinnaiyan posted to copa by ihpark on 2008-10-05 08:17:09 as along with 8 people ipark-kaist absterga kentsis jfr tuck emb51 oelemento winterschlaefer
	Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. [My Copy] Science (New York, N.Y.), Vol. 286, No. 5439. (15 October 1999), pp. 531-537. by T. R. Golub, D. K. Slonim, P. Tamayo, et al.C. Huard, M. Gaasenbeek, J. P. Mesirov, H. Coller, M. L. Loh, J. R. Downing, M. A. Caligiuri, C. D. Bloomfield, E. S. Lander posted to copa by ihpark on 2008-10-04 05:48:38 as along with 20 people and 2 groups isimpson srp33 ipark-kaist kentz esyoun stharward gstiglic ctaraujo winterschlaefer hhhhssss balajis sdvillal archroad giovanni santhosh ugengma jo_davies akastrin zchen raiyar Network Analysis of Genes Regulated in Renal Diseases GeschwindLab
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (September 2007), 1537. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted to copa by ihpark on 2008-10-03 10:26:30 as
	Genomic outlier profile analysis: mixture models, null hypotheses, and nonparametric estimation. [My Copy] Biostatistics (Oxford, England) (6 June 2008) by Debashis Ghosh, Arul M M. Chinnaiyan posted to copa by ihpark on 2008-10-03 06:37:56 as along with 2 people jfr guhjy