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	Analyzing miRNA co-expression networks to explore TF-miRNA regulation. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 163. by Sanghamitra Bandyopadhyay, Malay Bhattacharyya posted to expression transcription by imina on 2009-06-26 00:40:34 as along with 9 people and 1 group guhjy daforerog TRHvidsten SaraNasser natstreet lwaldron erel10 ealloza druvus Bioinformatics
	Simulation of large-scale rule-based models [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 910-917. by Joshua Colvin, Michael I. Monine, James R. Faeder, William S. Hlavacek, Daniel D. Von Hoff, Richard G. Posner posted to large-scale mode modeling simulation by imina on 2009-03-27 19:07:43 as along with 2 people guhjy pauldobson
	Multivariate analysis of variance test for gene set analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 897-903. by Chen-An A. Tsai, James J. Chen posted to no-tag by imina on 2009-03-27 19:06:59 as along with 7 people jfr guhjy tonamswish natstreet dswan rdiaz thomaskelder
	Identification of differential gene pathways with principal component analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 882-889. by Shuangge Ma, Michael R. Kosorok posted to differential gene pathway pca by imina on 2009-03-27 19:06:23 as along with 10 people jfr kemalpak padosori tonamswish heliopais dswan rdiaz VGreiff guhjy druvus
	Differential Dependency Network Analysis to Identify Condition-Specific Topological Changes in Biological Networks [My Copy] Bioinformatics (26 December 2008), btn660. by Bai Zhang, Huai Li, Rebecca B. Riggins, et al.Ming Zhan, Jianhua Xuan, Zhen Zhang, Eric P. Hoffman, Robert Clarke, Yue Wang posted to biological condition-specific network by imina on 2009-02-13 17:33:14 as along with 7 people southo bertelsen lptolik mstumpf dolchan grahamc roys
	Module networks revisited: computational assessment and prioritization of model predictions [My Copy] Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 490-496. by Anagha Joshi, Riet De Smet, Kathleen Marchal, Yves Van de Peer, Tom Michoel posted to module network by imina on 2009-02-13 17:32:16 as along with 12 people ptrobajo TRHvidsten jfr guhjy tvdbulck mhamada roys zufar rdiaz druvus verdicchio dolchan
	Genetic network inference as a series of discrimination tasks [My Copy] Bioinformatics (5 February 2009), btp072. by Shuhei Kimura, Satoshi Nakayama, Mariko Hatakeyama posted to gene inference network by imina on 2009-03-27 19:08:43 as along with 2 people baldazen rdiaz
	BISEN: Biochemical Simulation Environment. [My Copy] Bioinformatics (Oxford, England) (25 February 2009) by J Vanlier, F Wu, F Qi, et al.K C C. Vinnakota, Y Han, R K K. Dash, F Yang, D A A. Beard posted to no-tag by imina on 2009-03-19 02:41:59 as along with 1 person guhjy
	Systems Biology Metabolic Modeling Assistant (SBMM): An on-tology-based tool for the integration of metabolic data in kinetic modeling. [My Copy] Bioinformatics (Oxford, England) (2 February 2009) by Armando Reyes-Palomares, Raul Montañez, Alejando Del Real-Chicharro, et al.Othmane Chniber, Amine Kerzazi, Ismael Navas-Delgado, Miguel Ángel A. Medina, José Aldana A. Montes, Francisca Sánchez-Jiménez posted to no-tag by imina on 2009-03-19 02:41:41 as along with 6 people and 1 group sobolevnrm mdstobbe agomez dagmar allysonlister dullhunk baker-group
	CORNA: testing gene lists for regulation by microRNAs [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 832-833. by X. Wu, M. Watson posted to no-tag by imina on 2009-03-19 02:41:23 as along with 10 people and 2 groups VR lwaldron jfr guhjy Stew djkt nuin natstreet druvus mhamada microRNA Bioinformatics - CRUK
	The DICS repository: module-assisted analysis of disease-related gene lists. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 830-831. by Sabine Dietmann, Elisabeth Georgii, Alexey Antonov, Koji Tsuda, Hans-Werner W. Mewes posted to no-tag by imina on 2009-03-19 02:41:05 as along with 2 people jfr guhjy
	Exploring phenotype-associated modules in an oral cavity tumor using an integrated framework [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 795-800. by Zhirong Sun, Jie Luo, Yun Zhou, Junjie Luo, Ke Liu, Wenting Li posted to no-tag by imina on 2009-03-19 02:39:55 as along with 1 person rdiaz
	Benchmarks for identification of ordinary differential equations from time series data [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 780-786. by Peter Gennemark, Dag Wedelin posted to no-tag by imina on 2009-03-19 02:39:34 as along with 3 people kentz aheilbut agomez
	Gene network reconstruction from transcriptional dynamics un-der kinetic model uncertainty: A case for the second derivative. [My Copy] Bioinformatics (Oxford, England) (13 February 2009) by David R R. Bickel, Zahra Montazeri, Pei-Chun C. Hsieh, Mary Beatty, Shai J J. Lawit, Nicholas J J. Bate posted to no-tag by imina on 2009-03-19 02:37:19 as along with 3 people agomez joseph_x_zhou guhjy
	Enumeration of condition-dependent dense modules in protein interaction networks [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 933-940. by Elisabeth Georgii, Sabine Dietmann, Takeaki Uno, Philipp Pagel, Koji Tsuda posted to condition-specific interactions module network protein by imina on 2009-03-27 19:09:42 as along with 5 people carlk hryk eesruiz grahamc mhamada
	Identifying gene regulatory modules of heat shock response in yeast [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Wei S. Wu, Wen H. Li posted to grmyeastheat shock by imina on 2008-09-26 15:23:13 as along with 1 person neils
	A Discussion of Statistical Methods for Design and Analysis of Microarray Experiments for Plant Scientists [My Copy] Plant Cell, Vol. 18, No. 9. (1 September 2006), pp. 2112-2121. by Dan Nettleton posted to analysis design expression microarray statistical by imina on 2009-06-30 20:44:32 as along with 1 person ptrobajo
	Computing paths and cycles in biological interaction graphs [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 181. by Steffen Klamt, Axel von Kamp posted to graphs by imina on 2009-06-26 00:43:11 as along with 4 people Scis0000002 rdiaz barriot shikin
	A web-based software system for dynamic gene cluster comparison across multiple genomes. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 956-957. by Kashi Vishwanath V. Revanna, Vivek Krishnakumar, Qunfeng Dong posted to application example note by imina on 2009-03-27 19:10:33 as along with 5 people guhjy VGreiff natstreet druvus sebastien_vigneau
	Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Andre Fujita, Luciana Gomes, Joao Sato, et al.Rui Yamaguchi, Carlos Thomaz, Mari Sogayar, Satoru Miyano posted to cancer expression functional gene multivariate by imina on 2009-03-27 19:02:39 as along with 3 people and 1 group xingxu diging_data renatomilani BTS-PT-AS-CS
	Benchmarking regulatory network reconstruction with GRENDEL [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 801-807. by Brian C. Haynes, Michael R. Brent posted to no-tag by imina on 2009-02-06 22:39:42 as along with 7 people dolchan tmarscha tonamswish TRHvidsten APRegier roys rdiaz
	Sparse combinatorial inference with an application in cancer biology [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 265-271. by Sach Mukherjee, Steven Pelech, Richard M. Neve, et al.Wen-Lin Kuo, Safiyyah Ziyad, Paul T. Spellman, Joe W. Gray, Terence P. Speed posted to cancer combinatorial inference by imina on 2009-01-30 16:34:45 as along with 3 people ipark-kaist jfr mstumpf
	Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 243-250. by Kevin Y. Yip, Mark Gerstein posted to biological interactions network by imina on 2009-01-30 16:33:36 as along with 6 people ptrobajo anf guhjy mstumpf grahamc kgutwin
	Prioritizing risk pathways: a novel association approach to searching for disease pathways fusing SNPs and pathways. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 237-242. by Lina Chen, Liangcai Zhang, Yan Zhao, et al.Liangde Xu, Yukui Shang, Qian Wang, Wan Li, Hong Wang, Xia Li posted to disease pathway snp by imina on 2009-01-30 16:30:01 as along with 8 people dolchan kimorley jfr zufar guhjy shikin tg150 pkonings
	Gene-Disease Relationship Discovery based on Model-driven Data Integration and Database View Definition [My Copy] Bioinformatics (27 November 2008), btn612. by S. Yilmaz, P. Jonveaux, C. Bicep, L. Pierron, M. Smail-Tabbone, M. D. Devignes posted to data disease gene integration by imina on 2009-01-30 16:28:21 as along with 5 people rdiaz jfr mitko guhjy pkonings
	Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Raffaele Giancarlo, Davide Scaturro, Filippo Utro posted to cluster microarray validation by imina on 2008-11-24 19:32:23 as along with 6 people jfr kittipat lptolik nuin druvus isimpson
	Improved identification of conserved cassette exons using Bayesian networks [My Copy] BMC Bioinformatics, Vol. 9 (12 November 2008), 477. by Rileen Sinha, Michael Hiller, Rainer Pudimat, Ulrike Gausmann, Matthias Platzer, Rolf Backofen posted to alternative exon splicing by imina on 2008-11-24 19:31:22 as
	Gene set enrichment analysis for non-monotone association and multiple experimental categories [My Copy] BMC Bioinformatics, Vol. 9 (14 November 2008), 481. by Rongheng, Leping Li posted to no-tag by imina on 2008-11-24 19:30:30 as along with 7 people jfr paszkows heliopais tg150 guhjy lptolik barriot
	Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation [My Copy] BMC Bioinformatics, Vol. 9 (17 November 2008), 484. by Jakub, Jan Komorowski posted to regulation tfbinding transcription by imina on 2008-11-24 19:29:57 as along with 1 person lptolik
	Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork [My Copy] BMC Genetics, Vol. 9 (18 November 2008), 73. by Arnis, Robbie Waugh posted to data expression integration by imina on 2008-11-24 19:29:15 as along with 2 people orzenil druvus
	A comprehensive functional analysis of tissue specificity of human gene expression. [My Copy] BMC biology, Vol. 6, No. 1. (2008) by Z. Dezso, Y. Nikolsky, E. Sviridov, et al.W. Shi, T. Serebriyskaya, D. Dosymbekov, A. Bugrim, E. Rakhmatulin, R. J. Brennan, A. Guryanov, K. Li, J. Blake, R. R. Samaha, T. Nikolskaya posted to expression gene human tissue by imina on 2008-11-20 23:18:02 as along with 8 people and 1 group dolchan grahamc shikin jfr guhjy acanario inesdesantiago GeeSharpMinor GeneGo
	Identifying differential correlation in gene/pathway combinations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (18 November 2008), 488. by Rosemary Braun, Leslie Cope, Giovanni Parmigiani posted to correlation expression gene pathway by imina on 2008-11-20 23:14:51 as along with 11 people dolchan dipenps zufar jfr shikin mdstobbe rdiaz renatomilani lptolik barriot ptrobajo
	Assessment of protein set coherence using functional annotations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Monica Chagoyen, Jose Carazo, Alberto P. Montano posted to annotation functional protein validation by imina on 2008-11-20 23:12:29 as along with 8 people sgoetz taguchi Keywan druvus grahamc lptolik barriot GeeSharpMinor
	Expression-based Pathway Signature Analysis (EPSA): Mining publicly available microarray data for insight into human disease. [My Copy] BMC medical genomics, Vol. 1, No. 1. (20 October 2008) by Jessica D. Tenenbaum, Michael G. Walker, Paul J. Utz, Atul J. Butte posted to disease microarray pathway signature by imina on 2008-11-20 23:11:11 as along with 9 people dolchan ipark-kaist jfr zufar daforerog guhjy huiminC ptrobajo oelemento
	Feature selection environment for genomic applications [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 October 2008), 451. by Fabricio Lopes, David Martins, Roberto Cesar posted to feature genomic selection by imina on 2008-11-20 23:05:00 as along with 6 people rdiaz jfr TRHvidsten GustavoG lptolik operon
	Boolean implication networks derived from large scale, whole genome microarray datasets [My Copy] Genome Biology, Vol. 9 (30 October 2008), R157. by Debashis Sahoo, David L. Dill, Andrew J. Gentles, Robert Tibshirani, Sylvia K. Plevritis posted to boolean microarray network by imina on 2008-11-20 23:02:48 as along with 8 people dolchan zufar jfr rdiaz pengchy guhjy mdperry bcondon
	An in silico method for detecting overlapping functional modules from composite biological networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Ioannis Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted to biological functional module network by imina on 2008-11-20 23:00:52 as along with 7 people dolchan jfr diamantis saket renatomilani lptolik jonesn
	Integrating chromosomal aberrations and gene expression profiles to dissect rectal tumorigenesis [My Copy] BMC Cancer, Vol. 8, No. 1. (2008), 314. by Esther Lips, Ronald van Eijk, Eelco de Graaf, et al.Jan Oosting, Noel de Miranda, Tom Karsten, Cornelis van de Velde, Paul Eilers, Rob Tollenaar, Tom van Wezel, Hans Morreau posted to aberration cancer chromosomal data genomic microarray rectal by imina on 2008-11-20 23:00:00 as along with 7 people dolchan zufar rdiaz tvanwezel jfr ealloza frohike
	INTEGRATION OF MICROARRAY AND TEXTUAL DATA IMPROVES THE PROGNOSIS PREDICTION OF BREAST, LUNG AND OVARIAN CANCER PATIENTS [My Copy] PSB 2008 (2008) by O. Gevaert, Van S. Vooren, Moor posted to no-tag by imina on 2008-09-26 15:42:32 as
	CONSISTENT ALIGNMENT OF METABOLIC PATHWAYS WITHOUT ABSTRACTION [My Copy] PSB 2008 proceedings by Ferhat Ay, Tamer Kahveci, Valerie Cr´ecy-Lagard posted to alignment pathway by imina on 2008-09-26 15:39:01 as
	Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions. [My Copy] Genome biology, Vol. 9, No. 9. (22 September 2008), R140. by Evan S. Snitkin, Aimée M. Dudley, Daniel M. Janse, Kaisheen Wong, George M. Church, Daniel Segrè posted to no-tag by imina on 2008-09-26 15:33:59 as along with 2 people JeremyZucker michaelbarton
	The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets - improving meta-analysis and prediction of prognosis [My Copy] BMC Medical Genomics, Vol. 1, No. 1. (2008) by Andrew Sims, Graeme Smethurst, Yvonne Hey, et al.Michal Okoniewski, Stuart Pepper, Anthony Howell, Crispin Miller, Robert Clarke posted to rawdataprocessing by imina on 2008-09-26 15:32:07 as along with 2 people rdiaz frohike
	Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues. [My Copy] Genome biology, Vol. 9, No. 9. (2008) by Sami Kilpinen, Reija Autio, Kalle Ojala, et al.Kristiina Iljin, Elmar Bucher, Henri Sara, Tommi Pisto, Matti Saarela, Rolf I. Skotheim, Mari Björkman, John-Patrick P. Mpindi, Saija Haapa-Paananen, Paula Vainio, Henrik Edgren, Maija Wolf, Jaakko Astola, Matthias Nees, Sampsa Hautaniemi, Olli Kallioniemi posted to dataset human by imina on 2008-09-26 15:30:49 as along with 10 people and 1 group zufar daforerog jfr shikin grahamc pengchy guhjy klo fpattyn dolchan GeneGo
	Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes [My Copy] BioData Mining, Vol. 1, No. 8. (19 September 2008) by Reverter, Aaron Ingham, Dalrymple posted to no-tag by imina on 2008-09-26 15:29:57 as
	Comparative genomics of small RNA regulatory pathway components in vector mosquitoes. [My Copy] BMC genomics, Vol. 9, No. 1. (18 September 2008) by Corey L. Campbell, William C. Black, Ann M. Hess, Brian D. Foy posted to drosophila by imina on 2008-09-26 15:24:44 as along with 1 person pengchy
	A Bayesian framework for data and hypotheses driven fusion of high throughput data: application to mouse organogenesis. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 178-189. by M. Bhattacharjee, C. Pritchard, P. Nelson posted to no-tag by imina on 2008-09-06 01:24:43 as along with 1 person guhjy
	SGDI: system for genomic data integration. [My Copy] Pac Symp Biocomput (2008), pp. 141-152. by V. J. Carey, J. Gentry, R. Sarkar, D. Gentleman, S. Ramaswamy posted to no-tag by imina on 2008-09-06 01:17:51 as along with 2 people guhjy jfr
	A comparative study of different machine learning methods on microarray gene expression data [My Copy] BMC Genomics, Vol. 9, No. Suppl 1. (2008) by Mehdi Pirooznia, Jack Yang, Mary Q. Yang, Youping Deng posted to no-tag by imina on 2008-09-06 01:10:37 as along with 7 people dolchan guhjy jfr klo aviad_work renatomilani frohike
	Transcription network construction for large-scale microarray datasets using a high-performance computing approach. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by M. M. Zhu, Q. Wu posted to no-tag by imina on 2008-09-06 01:10:05 as along with 2 people guhjy jfr
	Bayesian biclustering of gene expression data. [My Copy] BMC genomics, Vol. 9 Suppl 1, No. Suppl 1. (2008), S4. by Jiajun Gu, Jun S. Liu posted to no-tag by imina on 2008-09-06 01:09:11 as along with 9 people meanerelk dolchan marti tonamswish bertelsen tvdbulck jfr yangc dragonrez

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