incovoma's library 92 articles Export

	Transcript Assignment for NetAffx Annotations [My Copy] (2006) posted to affymetrix annotation consensus netaffx probe set target transcript by incovoma on 2008-02-01 13:22:53 as
	AILUN: reannotating gene expression data automatically. [My Copy] Nature methods, Vol. 4, No. 11. (November 2007), pp. 879-879. by Rong Chen, Li Li, Atul J. Butte posted to affymetrix annotation geo large microarray scale by incovoma on 2008-02-01 13:06:56 as along with 4 people frohike tmmurali jfr guhjy
	DAVID: Database for Annotation, Visualization, and Integrated Discovery [My Copy] Genome Biology, Vol. 4, No. 5. (2003), P3. by Glynn Dennis, Brad Sherman, Douglas Hosack, et al.Jun Yang, Wei Gao, H. Clifford Lane, Richard Lempicki posted to annotation database functional microarray visualization by incovoma on 2008-02-01 13:04:59 as along with 6 people ipark-kaist VGreiff bertelsen capitall beete guhjy
	RESOURCERER: a database for annotating and linking microarray resources within and across species. [My Copy] Genome Biol, Vol. 2, No. 11. (2001) by J. Tsai, R. Sultana, Y. Lee, et al.G. Pertea, S. Karamycheva, V. Antonescu, J. Cho, B. Parvizi, F. Cheung, J. Quackenbush posted to affymetrix annotation gene genechip index microarray tigr by incovoma on 2008-02-01 13:00:27 as along with 2 people mlangill aalibes
	Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data [My Copy] Nucl. Acids Res., Vol. 33, No. 20. (10 November 2005), pp. e175-e175. by Manhong Dai, Pinglang Wang, Andrew D. Boyd, et al.Georgi Kostov, Brian Athey, Edward G. Jones, William E. Bunney, Richard M. Myers, Terry P. Speed, Huda Akil, Stanley J. Watson, Fan Meng posted to affymetrix annotation definition genechip by incovoma on 2008-02-01 12:58:05 as along with 11 people and 2 groups rmk lwaldron giovenko pcahan1 frohike nicholso heliopais Montrachet shikin bertelsen waszak Bioinformatics GeneGo
	A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array [My Copy] Nucleic Acids Research, Vol. 33, No. 3. (2005), pp. e31-e31. by Jeremy Harbig, Robert Sprinkle, Steven A. Enkemann posted to affymetrix annotation consensus genechip sequences target by incovoma on 2008-02-01 12:54:00 as along with 3 people jfr heliopais bertelsen
	NCBI GEO: mining tens of millions of expression profiles--database and tools update. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by T. Barrett, D. B. Troup, S. E. Wilhite, et al.P. Ledoux, D. Rudnev, C. Evangelista, I. F. Kim, A. Soboleva, M. Tomashevsky, R. Edgar posted to affymetrix annotation geo microarray ncbi by incovoma on 2008-02-01 12:52:18 as along with 8 people allenyu shikin guhjy jfr balajis hpiwowar pziarsolo tvdbulck
	Inconsistencies over time in 5% of NetAffx probe-to-gene annotations. [My Copy] BMC Bioinformatics, Vol. 6 (20 July 2005) by C. Perez-Iratxeta, M. A. Andrade posted to affymetrix annotation genechip netaffx by incovoma on 2008-02-01 12:50:48 as along with 1 person miguel
	NetAffx: Affymetrix probesets and annotations. [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 82-86. by G. Liu, A. E. Loraine, R. Shigeta, et al.M. Cline, J. Cheng, V. Valmeekam, S. Sun, D. Kulp, M. A. Siani-Rose posted to affymetrix annotation consensus genechip sequences target by incovoma on 2008-02-01 12:45:52 as along with 2 people miguel gpalidwor
	The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes. [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005) by Y. Lee, J. Tsai, S. Sunkara, et al.S. Karamycheva, G. Pertea, R. Sultana, V. Antonescu, A. Chan, F. Cheung, J. Quackenbush posted to affymetrix annotation est genechip porcine sequence target tigr by incovoma on 2008-02-01 12:44:02 as along with 2 people miguel Schmidtc
	The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species [My Copy] Nucl. Acids Res., Vol. 29, No. 1. (1 January 2001), pp. 159-164. by John Quackenbush, Jennifer Cho, Daniel Lee, et al.Feng Liang, Ingeborg Holt, Svetlana Karamycheva, Babak Parvizi, Geo Pertea, Razvan Sultana, Joseph White posted to annotation gene genechip index microarray porcine sequence target tigr by incovoma on 2008-02-01 12:40:53 as along with 1 person nwpuzebra
	Annotation of the Affymetrix porcine genome microarray [My Copy] Animal Genetics, Vol. 37, No. 4. (August 2006), pp. 423-424. by S. Tsai, J. P. Cassady, B. A. Freking, D. J. Nonneman, G. A. Rohrer, J. A. Piedrahita posted to affymetrix annotation genechip microarray porcine by incovoma on 2008-02-01 12:36:28 as
	The Bioperl Toolkit: Perl Modules for the Life Sciences [My Copy] Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618. by J. E. Stajich, D. Block, K. Boulez, et al.S. E. Brenner, S. A. Chervitz, C. Dagdigian, G. Fuellen, J. G. R. Gilbert, Korf, H. Lapp, H. Lehvaslaiho, C. Matsalla, C. J. Mungall, B. Osborne, M. R. Pocock, P. Schattner, M. Senger, L. D. Stein, E. Stupka, M. D. Wilkinson, E. Birney posted to bioperl blast parser by incovoma on 2007-09-02 10:06:27 as along with 26 people and 2 groups ludaesch jsatkosk kiekyon Thaverkamp Cortel brdwilde daforerog GustavoLacerda krapnik jmeppley chad_davis rvosa indigoviolet skhadar dullhunk dgront stajich noby glycine tyrosine threonine valine nklee hpaces sekmi ninch EisenLab FAB-lab
	Mediation of c-Myc-induced apoptosis by p53. [My Copy] Science, Vol. 265, No. 5181. (30 September 1994), pp. 2091-2093. by H. Hermeking, D. Eick posted to c-myc eick gsf by incovoma on 2007-08-31 23:44:41 as
	From patterns to pathways: gene expression data analysis comes of age. [My Copy] Nat Genet, Vol. 32 Suppl (December 2002), pp. 502-508. by D. K. Slonim posted to analysis expression gene by incovoma on 2007-08-31 12:13:28 as along with 5 people and 1 group frohike textoris srp33 roys klo GEB
	Statistical Analysis of Gene Expression Microarray Data [My Copy] (2002) by Terry Speed posted to analysis microarray supervised unsupervised by incovoma on 2007-08-31 12:09:49 as
	Discovering statistically significant biclusters in gene expression data. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1 (2002) by Amos Tanay, Roded Sharan, Ron Shamir posted to biclustering expression gene by incovoma on 2007-08-31 12:04:15 as along with 12 people and 2 groups meanerelk marti tonamswish ihpark ggrot okarsligil lfriedl dps dragonrez tvdbulck carlk librain kdl Bioinformatics
	Guide to Probe Logarithmic Intensity Error (PLIER) Estimation [My Copy] posted to affymetrix plier plier16 by incovoma on 2007-08-31 11:37:22 as
	High density synthetic oligonucleotide arrays. [My Copy] Nat Genet, Vol. 21, No. 1 Suppl. (January 1999), pp. 20-24. by R. J. Lipshutz, S. P. Fodor, T. R. Gingeras, D. J. Lockhart posted to affymetrix chips gene oligonucleotide by incovoma on 2007-08-31 11:06:36 as along with 3 people and 1 group bertelsen jeremymiller shikin GeschwindLab
	The sequence of the human genome. [My Copy] Science (New York, N.Y.), Vol. 291, No. 5507. (16 February 2001), pp. 1304-1351. by J. C. Venter, M. D. Adams, E. W. Myers, et al.P. W. Li, R. J. Mural, G. G. Sutton, H. O. Smith, M. Yandell, C. A. Evans, R. A. Holt, J. D. Gocayne, P. Amanatides, R. M. Ballew, D. H. Huson, J. R. Wortman, Q. Zhang, C. D. Kodira, X. H. Zheng, L. Chen, M. Skupski, G. Subramanian, P. D. Thomas, J. Zhang, Gabor G. L. Miklos, C. Nelson, S. Broder, A. G. Clark, J. Nadeau, V. A. Mckusick, N. Zinder, A. J. Levine, R. J. Roberts, M. Simon, C. Slayman posted to celera genome human venter by incovoma on 2007-08-31 10:48:41 as along with 33 people and 3 groups rshe dspringett humburg vplagnol mqbphcw3 Scis0000002 fisherp sgoetz thegoose treangen frohike jo_davies reyez twenta aramata Cortel jwortman jnemecek bicko Dax42 yas balajis xdeupi arcticrasta dgront olympos naegele mimulus_99 brant granujilla CitoJam renatomilani Neeperando Proteinkinases T_lab LabCompMed
	Initial sequencing and analysis of the human genome [My Copy] Nature, Vol. 409, No. 6822. (15 February 2001), pp. 860-921. by E. S. Lander, L. M. Linton, B. Birren, et al.C. Nusbaum, M. C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, W. Fitzhugh, R. Funke, D. Gage, K. Harris, A. Heaford, J. Howland, L. Kann, J. Lehoczky, R. Levine, P. Mcewan, K. Mckernan, J. Meldrim, J. P. Mesirov, C. Miranda, W. Morris, J. Naylor, C. Raymond, M. Rosetti, R. Santos, A. Sheridan, C. Sougnez, N. Stange-Thomann, N. Stojanovic, A. Subramanian, D. Wyman, J. Rogers posted to genome human official project by incovoma on 2007-08-31 08:44:55 as along with 38 people and 3 groups n00c rshe timflutre bicko jmanning2k kentz humburg vplagnol mqbphcw3 ThomasDOtto psique timhubbard jo_davies daforerog taroleo micromassive wimufi sgoetz fisherp reyez bozdagd cthachuk Cortel dragonrez jnemecek gg Dax42 aprasad yas balajis xdeupi dullhunk dgront djkt olympos nagendraproj yoanjacquemin brant Proteinkinases T_lab LabCompMed
	Global functional profiling of gene expression. [My Copy] Genomics, Vol. 81, No. 2. (February 2003), pp. 98-104. by S. Draghici, P. Khatri, R. P. Martins, G. C. Ostermeier, S. A. Krawetz posted to go ora overrepresentation by incovoma on 2007-08-30 23:57:39 as along with 2 people and 1 group tardigrade ealloza BioinfoCIPF
	New methods for joint analysis of biological networks and expression data [My Copy] Bioinformatics, Vol. 20, No. 10. (1 July 2004), pp. 1517-1521. by Florian Sohler, Daniel Hanisch, Ralf Zimmer posted to data expression gene topnet by incovoma on 2007-08-30 23:56:25 as along with 2 people cswinburne TheresaNiederberger
	Exploring the metabolic and genetic control of gene expression on a genomic scale. [My Copy] Science, Vol. 278, No. 5338. (24 October 1997), pp. 680-686. by J. L. DeRisi, V. R. Iyer, P. O. Brown posted to cdna microarray by incovoma on 2007-08-30 23:55:03 as along with 8 people and 3 groups thomaskelder macowell lfriedl lyongu fisherp raiyar dbenn michaelbarton kdl BUiGEM steinmetzlab
	DNA chips: state-of-the art. [My Copy] Nat Biotechnol, Vol. 16, No. 1. (January 1998), pp. 40-44. by Graham Ramsay posted to chips dna microarray by incovoma on 2007-08-30 23:51:51 as
	Analysis of gene expression data with pathway scores. [My Copy] Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 407-417. by A. Zien, R. Küffner, R. Zimmer, T. Lengauer posted to analysis data expression gene pathway scores by incovoma on 2007-08-30 22:05:35 as
	Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. [My Copy] Nature, Vol. 171, No. 4356. (25 April 1953), pp. 737-738. by J. D. Watson, F. H. Crick posted to base dna pairing by incovoma on 2007-08-30 16:33:16 as along with 13 people and 2 groups thegoose fisherp myzhang superedu ecattell jwm dullhunk craigtalbert treangen tvdbulck megs candypmcg dna Radiation_Damage Stressosome
	Database resources of the National Center for Biotechnology. [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 28-33. by D. L. Wheeler, D. M. Church, S. Federhen, et al.A. E. Lash, T. L. Madden, J. U. Pontius, G. D. Schuler, L. M. Schriml, E. Sequeira, T. A. Tatusova, L. Wagner posted to database ncbi unigene by incovoma on 2007-08-27 13:46:45 as along with 1 person setar
	The Bovine Estrous Cycle [My Copy] (2004) by George Perry posted to bos bovine cycle estrous progesterone taurus by incovoma on 2007-08-23 10:21:33 as
	Data Sheet: GeneChip Bovine Genome Array [My Copy] posted to affymetrix array bovine chip genechip probe set by incovoma on 2007-08-02 17:07:13 as
	User's Guide to Product Comparison Spreadsheets [My Copy] posted to affymetrix array bovine chip2chip comparison human by incovoma on 2007-08-01 20:02:25 as
	A Brief Introduction to Coloured Petri Nets: http://folk.uio.no/andersmo/petrinet/papers/cpn/brief.pdf [My Copy] by Kurt Jensen posted to colored coloured net petri system wfs workflow by incovoma on 2007-08-01 09:29:01 as
	Coloured Petri nets [My Copy] Discrete Event Systems: A New Challenge for Intelligent Control Systems, IEE Colloquium on In Discrete Event Systems: A New Challenge for Intelligent Control Systems, IEE Colloquium (1993), pp. 5/1-5/3. by Kurt Jensen posted to colored coloured net petri system wfs workflow by incovoma on 2007-08-01 09:02:47 as
	Coloured Petri Nets: Basic Concepts, Analysis Methods and Practical Use [My Copy] (1992) by Kurt Jensen posted to colored coloured net petri system wfs workflow by incovoma on 2007-08-01 09:01:03 as
	Enzyme nomenclature 1992 : recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzymes [My Copy] (1992) by E. C. Webb posted to classification enzyme nomenclature by incovoma on 2007-07-31 14:53:21 as along with 1 person sgoetz
	Mining microarray expression data by literature profiling. [My Copy] Genome Biol, Vol. 3, No. 10. (13 September 2002) by D. Chaussabel, A. Sher posted to analysis array biology cluster computational databases expression factual family gene genes genetic humans information internet multigene oligonucleotide profiling science sequence by incovoma on 2007-07-31 10:49:56 as along with 1 person mitko
	Expert knowledge without the expert (talk). unpublished material. [My Copy] In European conference on computational biology (ECCB) (2005) by Robert Kueffner posted to concept maker mining talk text by incovoma on 2007-07-31 10:44:47 as
	Use of keyword hierarchies to interpret gene expression patterns [My Copy] Bioinformatics, Vol. 17, No. 4. (1 April 2001), pp. 319-326. by Daniel R. Masys, John B. Welsh, J. Lynn Fink, Michael Gribskov, Igor Klacansky, Jacques Corbeil posted to abstracting analysis and array databases expression factual gene indexing information medline mining oligonucleotide profiling retrieval sequence storage text by incovoma on 2007-07-31 10:38:38 as along with 4 people and 3 groups cisevol biblio24 irenas yas BergmanLab dbk-lab T_lab
	Linking microarray data to the literature. [My Copy] Nat Genet, Vol. 28, No. 1. (May 2001), pp. 9-10. by D. R. Masys posted to analysis array bibliographic collection controlled data databases expression gene genes medline mining oligonucleotide profiling sequence software text vocabulary by incovoma on 2007-07-31 10:35:10 as along with 1 person fisherp
	OrthoDisease: a database of human disease orthologs. [My Copy] Hum Mutat, Vol. 24, No. 2. (August 2004), pp. 112-119. by K. P. O'Brien, I. Westerlund, E. L. Sonnhammer posted to analysis animal animals arabidopsis bacterial caenorhabditis cerevisiae cluster coli databases design disease diseases drosophila elegans escherichia evolution fungal genetic genome human humans inborn inparanoid melanogaster mice models molecular plant proteome saccharomyces software by incovoma on 2007-07-30 17:36:23 as along with 2 people jeremymiller tmmurali
	Shopping in the genome market with EnsMart. [My Copy] Brief Bioinform, Vol. 4, No. 3. (September 2003), pp. 292-296. by D. Gilbert posted to acid and animals databases genome genomics humans information nucleic retrieval software storage by incovoma on 2007-07-30 11:48:57 as along with 1 person asddd
	Identification of common molecular subsequences. [My Copy] Journal of molecular biology, Vol. 147, No. 1. (25 March 1981), pp. 195-197. by T. F. Smith, M. S. Waterman posted to alignment base chemical local models sequence similarity by incovoma on 2007-07-30 10:21:57 as along with 21 people rshe jengeldk maria_hauser jmanning2k cmor parnell adamnellis timflutre heliopais mcbla alessandroparini usagi-kirin creswick vavi bicko dgront rabio cjeans sujaikumar newton1234 bozdagd
	A general method applicable to the search for similarities in the amino acid sequence of two proteins. [My Copy] Journal of molecular biology, Vol. 48, No. 3. (March 1970), pp. 443-453. by S. B. Needleman, C. D. Wunsch posted to acid alignment amino computers global hemoglobins methods muramidase myoglobin probability ribonucleases sequence by incovoma on 2007-07-30 10:17:46 as along with 16 people windman83 esyoun stsaft timflutre mcbla BioNica db344 DarkMars cawelsh9 sebk jwm dgront rabio yylin newton1234 Ema
	Flexible sequence similarity searching with the FASTA3 program package. [My Copy] Methods Mol Biol, Vol. 132 (2000), pp. 185-219. by W. R. Pearson posted to acid alignment amino and data database evolution homology information management molecular retrieval sequence storage systems by incovoma on 2007-07-29 21:02:25 as along with 1 person shung
	The Ensembl automatic gene annotation system. [My Copy] Genome research, Vol. 14, No. 5. (1 May 2004), pp. 942-950. by V. Curwen, E. Eyras, T. D. Andrews, et al.L. Clarke, E. Mongin, S. M. J. Searle, M. Clamp posted to acid alignment amino animals anopheles automation biology caenorhabditis computational dna dosage expressed gene genes genome helminth homology human humans insect mice of predictive proteins pseudogenes rats regions repeat sequence sequences software tags tandem tests untranslated value by incovoma on 2007-07-29 20:48:58 as along with 7 people and 1 group rshe stharward druvus giovenko indigoviolet nicholso maximilianh EisenLab
	GenBank. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by D. A. Benson, I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, D. L. Wheeler posted to acid animals base complementary databases dna expressed genomics humans interface internet library medicine national nucleic of sequence sites states tagged tags united us user-computer by incovoma on 2007-07-29 20:29:22 as along with 1 person dullhunk
	The Protein Information Resource. [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 345-347. by C. H. Wu, L. S. Yeh, H. Huang, et al.L. Arminski, J. Castro-Alvear, Y. Chen, Z. Hu, P. Kourtesis, R. S. Ledley, B. E. Suzek, C. R. Vinayaka, J. Zhang, W. C. Barker posted to acid amino animals bibliographic databases internet protein sequence by incovoma on 2007-07-29 20:09:57 as along with 1 person and 1 group kracher Immunoinformatics
	Biochemistry [My Copy] In Biochemistry (2006) by Jeremy, L. Stryer, J. L. Tymoczko posted to biochemistry citrate cycle pathway tca by incovoma on 2007-07-25 18:33:04 as
	Kinetic properties of the 2-oxoglutarate dehydrogenase complex from Azotobacter vinelandii evidence for the formation of a precatalytic complex with 2-oxoglutarate. [My Copy] Eur J Biochem, Vol. 267, No. 12. (June 2000), pp. 3583-3591. by V. Bunik, A. H. Westphal, A. de Kok posted to acids acyltransferases azotobacter binding complex dehydrogenase dihydrolipoamide flavins ketoglutarate ketoglutaric kinetics magnesium oxaloacetate pyrophosphate sites thiamine vinelandii by incovoma on 2007-07-23 16:31:45 as
	The ENZYME database in 2000 [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 304-305. by Amos Bairoch posted to databases enzymes factual internet terminology by incovoma on 2007-07-23 16:29:27 as along with 4 people medic0747 shung carlk grottenolm

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