inesdesantiago's algorithm [11 articles] Export Sort

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	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to chip-seq algorithm by inesdesantiago on 2009-10-03 02:33:51 as along with 11 people and 4 groups Vincent_Rouilly tonamswish dswan fenghezi idonaldson polivares mkiyer druvus stajich humburg rschulz Bioinformatics JLab BergmanLab Mycology
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to algorithm analysis chip-seq by inesdesantiago on 2009-07-03 14:26:33 as along with 35 people and 4 groups urgi agbiotec lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton polivares darian orzenil cassj TRHvidsten djkt operon ghattem n00c danmaclean ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	Extracting transcription factor targets from ChIP-Seq data [My Copy] Nucl. Acids Res., Vol. 37, No. 17. (1 September 2009), e113. by Geetu Tuteja, Peter White, Jonathan Schug, Klaus H. Kaestner posted to peak chip-seq analysis algorithm by inesdesantiago on 2009-06-29 12:31:47 as along with 14 people and 4 groups hzoltan Vincent_Rouilly mfgreen ewilban1 idonaldson guhjy mkiyer rschulz fenghezi clearbluespring thegoose robeirne malcook polivares Chinnaiyan Lab SIMR bioinformatics BergmanLab Journal picks
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted to algorithm analysis chip-seq by inesdesantiago on 2009-06-23 18:53:27 as along with 18 people and 2 groups hzoltan n00c darian idonaldson michaelbarton gdb ewilban1 tonamswish guhjy kmdaily cassj fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad JLab BergmanLab
	CG dinucleotide clustering is a species-specific property of the genome. [My Copy] Nucleic Acids Res (10 October 2007) by Jacob L L. Glass, Reid F F. Thompson, Batbayar Khulan, et al.Maria E E. Figueroa, Emmanuel N N. Olivier, Erin J J. Oakley, Gary Van Zant, Eric E E. Bouhassira, Ari Melnick, Aaron Golden, Melissa J J. Fazzari, John M M. Greally posted to algorithm cpg evolution by inesdesantiago on 2008-11-25 15:29:21 as along with 3 people operon cabbagezs fpattyn
	ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (17 October 2008), e1000201. by Gary Hon, Bing Ren, Wei Wang posted to algorithm analysis chip-seq correlations by inesdesantiago on 2008-11-21 15:58:15 as along with 6 people darian sebastien_vigneau ewilban1 guhjy magusina djkt
	A probabilistic generative model for GO enrichment analysis [My Copy] Nucl. Acids Res. (1 August 2008), gkn434. by Yong Lu, Roni Rosenfeld, Itamar Simon, Gerard J. Nau, Ziv Bar-Joseph posted to algorithm go by inesdesantiago on 2008-10-27 11:32:30 as along with 10 people jfr guhjy yaredo rdiaz paszkows barriot waszak tmmurali raiyar jandot
	Genome-wide assessment of coding and non-coding conserved sequence tags in human and mouse genomes [My Copy] BMC Genomics, Vol. 9 (11 June 2008), 277. by Flavio Mignone, Anna Anselmo, Giacinto Donvito, Giorgio P. Maggi, Giorgio Grillo, Graziano Pesole posted to algorithm evolution by inesdesantiago on 2008-10-27 11:14:43 as along with 1 person fpattyn
	Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. [My Copy] Nucleic acids research, Vol. 36, No. 16. (6 September 2008), pp. 5221-5231. by R. Jothi, S. Cuddapah, A. Barski, K. Cui, K. Zhao posted to algorithm chip-seq proteome wide_mapping by inesdesantiago on 2008-09-25 15:05:31 as along with 10 people tonamswish talponer ewilban1 polivares guhjy mcm Eroslavochka mdperry sebastien_vigneau idonaldson
	A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence [My Copy] Nucl. Acids Res., Vol. 36, No. 8. (1 May 2008), pp. 2630-2638. by Osamu Gotoh posted to algorithm by inesdesantiago on 2008-08-05 15:23:11 as along with 7 people kittipat natstreet druvus zhouyu guhjy wisdom_love GenEglob
	A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge. [My Copy] Bioinformatics (12 October 2006) by Jiang Du, Joel S S. Rozowsky, Jan O O. Korbel, et al.Zhengdong D D. Zhang, Thomas E E. Royce, Martin H H. Schultz, Michael Snyder, Mark Gerstein posted to algorithm chip-chip microarray by inesdesantiago on 2008-01-18 21:34:08 as along with 9 people and 2 groups talponer bais miguel tuck eckart_bindewald djkt SeungjoonOh blobbybirdman xingxu Bioinformatics UH - Computational Biology

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analysis	62
polycomb	36
wide_mapping	36
chip-seq	35
differentiation	35
polymerase	32
noncoding-rna	31
microrna	30
chromatin_factors	30
evolution	28
chromatin-review	27
bivalent	27
chromatin-organization	26
genome-organization	26
software	25
review	22
cpg	22
transcription-profile-stemcells	22
differentiation_factors	21
posttranscription	21
microarray	20
cancer	20
methylation	20
differentiation-review	20
nucleosome	19
methods	19
intron	18
replication	18
spatial-review	17
spatial-organization	15
prediction	15
imprinted-genes	15
splicing	14
correlations	14
splicing-review	14
d-polymerase	14
sequencing	14
reprograming	14
hox	12
polymerase-review	12
rna-seq	12
transcription-general	12
d-chromatin-organization	11
ubiquitylation	11
locus-position	11
xist	11
algorithm	11
oct4sox2nanog	10
polycomb-review	10
cell-division	10
repeats	10
therapy	10
cohesin	9
transcription-profile	9
allelic-specific	9
proteome	9
cryptic	9
replication-review	8
rna-seq-review	8
stochastic	7
cluster	7
go	7
reprograming_factors	7
dnabinding_factors	7
science	7
antisense	7
ctd	6
structure	6
coordination	6
transposon	6
transcription-assembly	6
territory	6
gmod	6
tissue-specific	6
nuclear_factors	6
dna_topology	6
aware	5
d-ctd	5
d-genome-organization	5
h3k56	5
chip-chip	5
h3k9	5
xist-review	5
gc	5
inheritance	4
h3k4	4
reprograming-review	4
isochores	4
cancer-review	4
methylation-review	4
d-esc	4
age	4
method	4
snp	4
rest	4
d-noncoding-rna	4
bursting	4
housekeeping	4
recombination	3
embryonic_stem_cells	3
modeling	3
wide_mapping-review	3
inheritance-review	3
rna_decay	3
hematopoiesis	3
plant	3
nucleosome-review	3
d-chip-seq	3
d-polycomb	3
h3k27	3
enhancers	3
intergenic	3
culture	3
encode	3
instability	3
dna_methylation	2
d-spatial	2
d-bivalent	2
d-transcription	2
stem-cell-notag	2
interchromosome-association	2
d-polycomb-review	2
d-polymerase-review	2
promoters	2
d-rna-seq	2
transcriptome-evolution	2
mono-allelic	2
elongation	2
d-prevasive	2
d-analysis	2
d-gene-structure	2
h3k36	2
insulators	2
mitochondria	2
myc	2
ptm	1
h3k79	1
chip-pet	1
hek27	1
d-cpg	1
p300	1
hiv	1
cdk7	1
d-spatial-review	1
d-translation	1
d-stem-cells	1
logistic-regression	1
gene-loop	1
pev	1
d-differentiation	1
d-methylation	1
ucsc	1
d-olymerase	1
h3s31	1
d-posttranscription	1
diff	1
transcriptome-general	1
transcription_factors	1
d-single-molucule-seq	1
introns	1
polymerase-structure	1
database	1
peak	1
spof	1
mitosis	1

inesdesantiago's algorithm [11 articles] Export Sort

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