inesdesantiago's chip-seq [35 articles] Export

Recent papers added to inesdesantiago's library classified by the tag chip-seq. You can also see everyone's chip-seq.

	Insights from genomic profiling of transcription factors [My Copy] Nature Reviews Genetics, Vol. 10, No. 9. (11 August 2009), pp. 605-616. by Peggy J. Farnham posted to transcription_factors chip-seq by inesdesantiago on 2009-11-08 16:24:33 as along with 17 people and 2 groups heliopais fenghezi nklee samanthacooper fpattyn druvus frohike stubrown qayub megraw TRHvidsten mkiyer ericrpaquet ilyashl jbhiatt idonaldson danmaclean Journal picks Chinnaiyan Lab
	The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2730-2731. by John W. Nicol, Gregg A. Helt, Steven G. Blanchard, Archana Raja, Ann E. Loraine posted to software chip-seq by inesdesantiago on 2009-10-09 19:06:23 as along with 10 people and 2 groups jforment dokky daforerog torfinnnome idonaldson pkonings sebastien_vigneau guhjy natstreet druvus Bioinformatics Core Service ronbun_2009au
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to chip-seq algorithm by inesdesantiago on 2009-10-03 02:33:51 as along with 11 people and 4 groups Vincent_Rouilly tonamswish dswan fenghezi idonaldson polivares mkiyer druvus stajich humburg rschulz Bioinformatics JLab BergmanLab Mycology
	Impact of chromatin structures on DNA processing for genomic analyses. [My Copy] PloS one, Vol. 4, No. 8. (20 August 2009), e6700. by Leonid Teytelman, Bilge Ozaydin, Oliver Zill, et al.Philippe Lefrançois, Michael Snyder, Jasper Rine, Michael B. Eisen posted to review chip-seq by inesdesantiago on 2009-10-03 01:13:17 as along with 5 people and 4 groups fenghezi lthorrez polivares humburg stajich JLab CTCF BergmanLab Mycology
	Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity [My Copy] Nucl. Acids Res., Vol. 37, No. 15. (1 August 2009), e104. by Nicolas Philippe, Anthony Boureux, Laurent Brehelin, Jorma Tarhio, Therese Commes, Eric Rivals posted to chip-seq analysis by inesdesantiago on 2009-08-19 00:41:04 as along with 5 people fstrozzi sotacam jmcq guhjy xwbcn
	Genome-wide identification of DNA-protein interactions using chromatin immunoprecipitation coupled with flow cell sequencing. [My Copy] The Journal of endocrinology, Vol. 201, No. 1. (1 April 2009), pp. 1-13. by Brad G. Hoffman, Steven J. Jones posted to chip-seq analysis by inesdesantiago on 2009-08-19 00:40:44 as along with 3 people stubrown guhjy abizar
	Comparative study on ChIP-seq data: normalization and binding pattern characterization [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2334-2340. by Cenny Taslim, Jiejun Wu, Pearlly Yan, et al.Greg Singer, Jeffrey Parvin, Tim Huang, Shili Lin, Kun Huang posted to polymerase chip-seq analysis by inesdesantiago on 2009-08-19 00:22:19 as along with 8 people and 2 groups Stew tonamswish stubrown ewilban1 guhjy mkiyer humburg rschulz Bioinformatics - CRUK Chinnaiyan Lab
	Identifying Positioned Nucleosomes with Epigenetic Marks in Human from ChIP-Seq [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 537. by Yong Zhang, Hyunjin Shin, Jun Song, Ying Lei, X. Shirley Liu posted to analysis chip-seq by inesdesantiago on 2009-07-08 20:44:45 as along with 6 people antonkratz hagechouchin443 stubrown polivares idonaldson caseybrown
	Using quality scores and longer reads improves accuracy of Solexa read mapping [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 February 2008), 128. by Andrew Smith, Zhenyu Xuan, Michael Zhang posted to analysis chip-seq by inesdesantiago on 2009-07-08 20:22:56 as along with 18 people hzoltan seb1 heliopais bozdagd katholt n00c maren floatingpoint lukaswindhager natstreet druvus jfr pengchy farhat ghattem mdimon kmdaily caseybrown
	Evaluation of next generation sequencing platforms for population targeted sequencing studies [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R32. by Olivier Harismendy, Pauline Ng, Robert Strausberg, et al.Xiaoyun Wang, Timothy Stockwell, Karen Beeson, Nicholas Schork, Sarah Murray, Eric Topol, Samuel Levy, Kelly Frazer posted to analysis chip-seq by inesdesantiago on 2009-07-03 15:36:32 as along with 24 people and 2 groups jfr hzoltan dbensasson GustavoLacerda adijr agbiotec jgill darian jandot n00c jonilaserson maren mlog ppgardne kiekyon michaelbarton idoerg stajich skembel giovanni druvus lwaldron djkt natstreet Journal picks Mycology
	rtracklayer: an R package for interfacing with genome browsers. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1841-1842. by Michael Lawrence, Robert Gentleman, Vincent Carey posted to chip-seq spof by inesdesantiago on 2009-07-03 15:19:06 as along with 16 people and 3 groups daveGerrard iris42 guhjy aprasad dswan cisevol shikin daforerog ppgardne natstreet nuin brianb kshameer neils chrisamiller druvus Bioinformatics BergmanLab Journal picks
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to algorithm analysis chip-seq by inesdesantiago on 2009-07-03 14:26:33 as along with 33 people and 4 groups lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton polivares darian orzenil cassj TRHvidsten djkt operon ghattem n00c danmaclean ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted to analysis chip-chip chip-seq by inesdesantiago on 2009-07-03 14:23:38 as along with 12 people and 1 group jfr tonamswish rdiaz fpattyn jcbarret guhjy hendrik85 nklee polivares ewilban1 idonaldson humburg Journal picks
	A clustering approach for identification of enriched domains from histone modification ChIP-Seq data [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1952-1958. by Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, Weiqun Peng posted to cluster chip-seq analysis by inesdesantiago on 2009-07-03 14:17:05 as along with 12 people and 2 groups hzoltan hagechouchin443 ashraya stubrown cassj guhjy humburg ewilban1 gdb fenghezi ghattem polivares SIMR bioinformatics BergmanLab
	Gene Sifter [My Copy] by Vizx Labs posted to chip-seq software by inesdesantiago on 2009-06-30 20:10:19 as along with 1 person lynnefox
	Genome assembly reborn: recent computational challenges [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 354-366. by Mihai Pop posted to analysis chip-seq by inesdesantiago on 2009-06-29 13:56:42 as along with 30 people and 1 group jfr hzoltan cthachuk GustavoLacerda n00c agbiotec shabhonam pachorip APRegier jmcq stevebs jonilaserson michaelbarton GeeSharpMinor bertelsen aprasad ananta_samudra sandfire jmeppley mlangill fgibson ppgardne TRHvidsten pengchy robsyme nuin kiekyon natstreet druvus idoerg Journal picks
	Extracting transcription factor targets from ChIP-Seq data [My Copy] Nucl. Acids Res., Vol. 37, No. 17. (1 September 2009), e113. by Geetu Tuteja, Peter White, Jonathan Schug, Klaus H. Kaestner posted to peak chip-seq analysis algorithm by inesdesantiago on 2009-06-29 12:31:47 as along with 14 people and 4 groups hzoltan Vincent_Rouilly mfgreen ewilban1 idonaldson guhjy mkiyer rschulz fenghezi clearbluespring thegoose robeirne malcook polivares Chinnaiyan Lab SIMR bioinformatics BergmanLab Journal picks
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted to algorithm analysis chip-seq by inesdesantiago on 2009-06-23 18:53:27 as along with 18 people and 2 groups hzoltan n00c darian idonaldson michaelbarton gdb ewilban1 tonamswish guhjy kmdaily cassj fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad JLab BergmanLab
	Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes [My Copy] Nat Meth, Vol. 6, No. 4. (15 March 2009), pp. 291-295. by Iwanka Kozarewa, Zemin Ning, Michael A. Quail, Mandy J. Sanders, Matthew Berriman, Daniel J. Turner posted to analysis chip-seq by inesdesantiago on 2009-06-13 01:51:52 as along with 6 people mkiyer guhjy natstreet athma druvus jbhiatt
	Using ChIP-chip and ChIP-seq to study the regulation of gene expression: genome-wide localization studies reveal widespread regulation of transcription elongation. [My Copy] Methods (San Diego, Calif.), Vol. 48, No. 4. (9 August 2009), pp. 398-408. by Daniel A. Gilchrist, David C. Fargo, Karen Adelman posted to analysis chip-seq polymerase by inesdesantiago on 2009-05-26 13:22:59 as along with 5 people fpattyn ewilban1 guhjy sebastien_vigneau idonaldson
	Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 523. by David Nix, Samir Courdy, Kenneth Boucher posted to analysis chip-seq by inesdesantiago on 2009-05-25 12:38:28 as along with 9 people and 2 groups darian gdb slv23 ewilban1 floatingpoint WanderingAengus magusina ghattem caseybrown Bioinformatics - CRUK SIMR bioinformatics
	How to map billions of short reads onto genomes [My Copy] Nature Biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to analysis chip-seq by inesdesantiago on 2009-05-12 11:01:48 as along with 28 people and 5 groups cthachuk hzoltan tonamswish heliopais giovenko jfr torfinnnome daforerog jonilaserson mkiyer Annab darian polivares ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew idonaldson neils Bioinformatics Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted to analysis chip-seq rna-seq by inesdesantiago on 2009-05-12 07:53:24 as along with 28 people and 2 groups hzoltan zufar eszczurek n00c dna ilyashl TRHvidsten poschm bertelsen ivanek guhjy wutongbin jfr raistrick gracio xingxu psique oelemento Ema reyez caseybrown kjglennie dh0000 GeeSharpMinor balicea djkt ArtemPankin zwang BenosLab Khavkin's lab
	Visualization of genomic data with the Hilbert curve [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1231-1235. by Simon Anders posted to analysis chip-seq by inesdesantiago on 2009-05-10 09:54:40 as along with 14 people and 1 group jfr jandot ewilban1 polivares djkt behindtherabbit guhjy humburg Thaverkamp svenrahmann jmeppley idonaldson rdiaz paszkows BergmanLab
	Optimal use of tandem biotin and V5 tags in ChIP assays. [My Copy] BMC molecular biology, Vol. 10 (05 February 2009), 6. by Katarzyna E. Kolodziej, Farzin Pourfarzad, Ernie de Boer, Sanja Krpic, Frank Grosveld, John Strouboulis posted to chip-chip chip-seq methods by inesdesantiago on 2009-03-22 14:16:53 as along with 1 person polivares
	EpiGRAPH: User-friendly software for statistical analysis and prediction of (epi-) genomic data [My Copy] Genome Biology, Vol. 10 (10 February 2009), R14. by Christoph, Thomas Lengauer posted to chip-seq prediction software by inesdesantiago on 2009-03-22 14:14:43 as along with 4 people Scis0000002 dullhunk guhjy reyez
	PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. [My Copy] Nature biotechnology, Vol. 27, No. 1. (04 January 2009), pp. 66-75. by Joel Rozowsky, Ghia Euskirchen, Raymond K. Auerbach, et al.Zhengdong D. Zhang, Theodore Gibson, Robert Bjornson, Nicholas Carriero, Michael Snyder, Mark B. Gerstein posted to analysis chip-seq software by inesdesantiago on 2009-01-30 11:21:25 as along with 18 people and 1 group hzoltan fpattyn gdb huali ewilban1 fenghezi smiddha jfr bertelsen JeremyZucker cassj dakelley ghattem abizar polivares idonaldson WanderingAengus guhjy SIMR bioinformatics
	Design and analysis of ChIP-seq experiments for DNA-binding proteins. [My Copy] Nature biotechnology, Vol. 26, No. 12. (16 December 2008), pp. 1351-1359. by Peter V. Kharchenko, Michael Y. Tolstorukov, Peter J. Park posted to analysis chip-seq methods by inesdesantiago on 2009-01-30 11:20:12 as along with 19 people and 2 groups hzoltan stubrown guhjy gdb tonamswish ewilban1 coela ekotelnikova jfr floatingpoint idonaldson WanderingAengus vplagnol xwbcn fpattyn mutagenic kengg rschulz ghattem KCL & UCL Bioinformatics SIMR bioinformatics
	Substantial biases in ultra-short read data sets from high-throughput DNA sequencing [My Copy] Nucl. Acids Res., Vol. 36, No. 16. (1 September 2008), e105. by Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer posted to analysis chip-seq by inesdesantiago on 2008-11-25 14:48:35 as along with 18 people and 1 group hzoltan jonilaserson n00c druvus orzenil burak woodson8 sameersoi humburg poschm polivares Huub_odc usagi-kirin jfr natstreet dakelley caseybrown GustavoLacerda microbiology_nijmegen
	ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (17 October 2008), e1000201. by Gary Hon, Bing Ren, Wei Wang posted to algorithm analysis chip-seq correlations by inesdesantiago on 2008-11-21 15:58:15 as along with 6 people darian sebastien_vigneau ewilban1 guhjy magusina djkt
	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted to chip-chip chip-seq software by inesdesantiago on 2008-11-12 11:06:51 as along with 24 people and 3 groups hzoltan fpattyn stubrown isimpson huali tonamswish ewilban1 sebastien_vigneau jfr kmdaily cassj bryankr malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy pengchy kengg bais idonaldson Neuroblastoma SIMR bioinformatics BenosLab
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to chip-seq software by inesdesantiago on 2008-11-10 12:17:03 as along with 39 people and 2 groups Julien_Fayolle seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	Modeling ChIP Sequencing In Silico with Applications [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (22 August 2008), e1000158. by Zhengdong D. Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein posted to analysis chip-seq modeling by inesdesantiago on 2008-09-26 13:04:16 as along with 10 people ewilban1 cassj WanderingAengus rschulz aramesh2 djkt kengg Stew gdb caseybrown
	Whole-genome sequencing and variant discovery in C. elegans. [My Copy] Nature methods, Vol. 5, No. 2. (20 February 2008), pp. 183-188. by LaDeana W. Hillier, Gabor T. Marth, Aaron R. Quinlan, et al.David Dooling, Ginger Fewell, Derek Barnett, Paul Fox, Jarret I. Glasscock, Matthew Hickenbotham, Weichun Huang, Vincent J. Magrini, Ryan J. Richt, Sacha N. Sander, Donald A. Stewart, Michael Stromberg, Eric F. Tsung, Todd Wylie, Tim Schedl, Richard K. Wilson, Elaine R. Mardis posted to analysis chip-seq by inesdesantiago on 2008-09-25 15:46:30 as along with 14 people seninp Annab n00c APRegier thegoose2 druvus semrich AaronDarling usagi-kirin matthewsuderman orzenil mdimon farhat tharris
	Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. [My Copy] Nucleic acids research, Vol. 36, No. 16. (6 September 2008), pp. 5221-5231. by R. Jothi, S. Cuddapah, A. Barski, K. Cui, K. Zhao posted to algorithm chip-seq proteome wide_mapping by inesdesantiago on 2008-09-25 15:05:31 as along with 10 people tonamswish talponer ewilban1 polivares guhjy mcm Eroslavochka mdperry sebastien_vigneau idonaldson

Note: You may cite this page as: http://www.citeulike.org/user/inesdesantiago/tag/chip-seq

analysis	62
polycomb	36
wide_mapping	36
chip-seq	35
differentiation	35
noncoding-rna	31
polymerase	31
chromatin_factors	30
microrna	30
evolution	28
bivalent	27
chromatin-review	27
chromatin-organization	26
genome-organization	26
software	25
cpg	22
review	22
transcription-profile-stemcells	22
differentiation_factors	21
posttranscription	21
cancer	20
differentiation-review	20
methylation	20
microarray	20
methods	19
nucleosome	19
intron	18
replication	18
spatial-review	17
imprinted-genes	15
prediction	15
spatial-organization	15
correlations	14
d-polymerase	14
reprograming	14
sequencing	14
splicing	14
splicing-review	14
hox	12
polymerase-review	12
rna-seq	12
transcription-general	12
algorithm	11
locus-position	11
ubiquitylation	11
xist	11
cell-division	10
d-chromatin-organization	10
oct4sox2nanog	10
polycomb-review	10
repeats	10
therapy	10
allelic-specific	9
cohesin	9
cryptic	9
proteome	9
transcription-profile	9
replication-review	8
rna-seq-review	8
antisense	7
cluster	7
dnabinding_factors	7
go	7
reprograming_factors	7
science	7
stochastic	7
coordination	6
ctd	6
dna_topology	6
gmod	6
nuclear_factors	6
structure	6
territory	6
tissue-specific	6
transcription-assembly	6
transposon	6
aware	5
chip-chip	5
d-genome-organization	5
gc	5
h3k56	5
h3k9	5
xist-review	5
age	4
bursting	4
cancer-review	4
d-ctd	4
d-noncoding-rna	4
h3k4	4
housekeeping	4
inheritance	4
isochores	4
method	4
methylation-review	4
reprograming-review	4
rest	4
snp	4
culture	3
d-chip-seq	3
d-esc	3
d-polycomb	3
embryonic_stem_cells	3
encode	3
enhancers	3
h3k27	3
hematopoiesis	3
inheritance-review	3
instability	3
intergenic	3
modeling	3
nucleosome-review	3
plant	3
recombination	3
rna_decay	3
wide_mapping-review	3
d-analysis	2
d-bivalent	2
d-gene-structure	2
dna_methylation	2
d-polymerase-review	2
d-prevasive	2
d-rna-seq	2
d-spatial	2
elongation	2
h3k36	2
insulators	2
interchromosome-association	2
mitochondria	2
myc	2
promoters	2
stem-cell-notag	2
transcriptome-evolution	2
cdk7	1
chip-pet	1
database	1
d-differentiation	1
diff	1
d-methylation	1
d-olymerase	1
d-polycomb-review	1
d-posttranscription	1
d-single-molucule-seq	1
d-spatial-review	1
d-stem-cells	1
d-transcription	1
d-translation	1
gene-loop	1
h3k79	1
h3s31	1
hek27	1
hiv	1
introns	1
logistic-regression	1
mitosis	1
mono-allelic	1
peak	1
pev	1
ptm	1
spof	1
transcription_factors	1
transcriptome-general	1
ucsc	1

inesdesantiago's chip-seq [35 articles] Export

inesdesantiago's tags