inquil's library 40 articles Export

	Establishing the Triplet Nature of the Genetic Code [My Copy] Cell, Vol. 128, No. 5. (09 March 2007), pp. 815-818. by C. Yanofsky posted to no-tag by inquil on 2009-11-03 11:03:27 as
	The dynamics of adaptation on correlated fitness landscapes [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 44. (3 November 2009), pp. 18638-18643. by Sergey Kryazhimskiy, GaÅ¡per TkaÄik, Joshua B. Plotkin posted to no-tag by inquil on 2009-11-03 08:07:04 as along with 5 people sameersoi bpcusack tkeitt zwang samubernard
	Assembling the Marine Metagenome, One Cell at a Time [My Copy] PLoS ONE, Vol. 4, No. 4. (23 April 2009), e5299. by Tanja Woyke, Gary Xie, Alex Copeland, et al.José M. González, Cliff Han, Hajnalka Kiss, Jimmy H. Saw, Pavel Senin, Chi Yang, Sourav Chatterji, Jan-Fang Cheng, Jonathan A. Eisen, Michael E. Sieracki, Ramunas Stepanauskas posted to no-tag by inquil on 2009-10-26 17:50:01 as along with 10 people and 3 groups dakelley hwright jonilaserson jlgreen chocolate2009 jmeppley vaulot Thaverkamp neils skoch3 iSEEM Papers recommended by the Roscoff Plankton Group Microbial-Ecology
	Phylogenetic screening of a bacterial, metagenomic library using homing endonuclease restriction and marker insertion [My Copy] Nucl. Acids Res. (18 September 2009), gkp746. by Pui Y. Yung, Catherine Burke, Matt Lewis, Suhelen Egan, Staffan Kjelleberg, Torsten Thomas posted to prokariotic phylogeny microbiology metagenomics bateria by inquil on 2009-10-26 10:29:55 as along with 1 person neils
	Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees [My Copy] Science, Vol. 324, No. 5934. (19 June 2009), pp. 1561-1564. by Kevin Liu, Sindhu Raghavan, Serita Nelesen, C. Randal Linder, Tandy Warnow posted to phylogenetics species taxonoymy by inquil on 2009-06-21 14:57:47 as along with 26 people and 4 groups gjuggler parnell kinestetika robertrentzsch xianjun gdb jbhiatt stajich operon biomcgary kieran101 zwang michaelbarton vingron tatman303 hryk lizbiogen pkonings ppgardne dokky aprasad timflutre TRHvidsten djkt fenghezi phoenixzxl Orengo Group Journal Picks Mycology Journal picks iSEEM
	PHYLOGENOMICS [My Copy] Annual Review of Ecology, Evolution, and Systematics, Vol. 36, No. 1. (2005), pp. 541-562. by Hervé Philippe, Frédéric Delsuc, Henner Brinkmann, Nicolas Lartillot posted to phlogenomics review supertree taxonomy by inquil on 2009-06-11 09:16:41 as along with 4 people skembel aprasad treangen timflutre
	Microbial population structures in the deep marine biosphere. [My Copy] Science (New York, N.Y.), Vol. 318, No. 5847. (5 October 2007), pp. 97-100. by Julie A. Huber, David B. Mark Welch, Hilary G. Morrison, et al.Susan M. Huse, Phillip R. Neal, David A. Butterfield, Mitchell L. Sogin posted to genomics marine microbiome by inquil on 2009-05-02 18:37:43 as along with 8 people and 3 groups madhadron djkt mblwhoi stajich kinestetika mellabee Fabnot hpaces microbiology_nijmegen Papers recommended by the Roscoff Plankton Group iSEEM
	On the origin of prokaryotic species. [My Copy] Genome research, Vol. 19, No. 5. (May 2009), pp. 744-756. by W. Ford Doolittle, Olga Zhaxybayeva posted to evolution phylogeny prokaryotic by inquil on 2009-05-02 17:47:18 as along with 3 people and 1 group neils jmeppley Thaverkamp Microbial-Ecology
	Proteomics of marine bacteria [My Copy] ELECTROPHORESIS, Vol. 29, No. 12. (2008), pp. 2603-2616. by Thomas Schweder, Stephanie Markert, Michael Hecker posted to bacteria genomics marine metagenomics metaproteomics proteomics symbiosis by inquil on 2009-04-14 16:47:40 as
	Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution [My Copy] In RECOMB '04: Proceedings of the eighth annual international conference on Resaerch in computational molecular biology (2004), pp. 326-335. by Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad posted to phylogenomics phylogeny reconciliation by inquil on 2009-04-14 15:25:55 as along with 1 person operon
	Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes [My Copy] Genome Res. (7 November 2007), gr.7105007. by Matthew D. Rasmussen, Manolis Kellis posted to drosophila genomics phylogenomics by inquil on 2009-04-14 15:14:45 as along with 5 people and 1 group mmfonseca druvus dpollard stajich caseybrown EisenLab
	A bioinformatician's guide to metagenomics. [My Copy] Microbiology and molecular biology reviews : MMBR, Vol. 72, No. 4. (1 December 2008), pp. 557-578. by Victor Kunin, Alex Copeland, Alla Lapidus, Konstantinos Mavromatis, Philip Hugenholtz posted to annotation bioinformatics metagenomics sequencing by inquil on 2009-03-24 10:08:09 as along with 37 people and 7 groups jasontsai halinat hwright michaelbarton taylor73 esyoun bluto idoerg hpaces skembel EKotlarska anphony stajich sharpton vrich vaulot adgrativol jakechen balicea dbk GustavoLacerda guhjy hessec fhalbrit Zephyrus anazhu dswan sjcockell Borelli druvus azazello kinestetika jmeppley neils Katje allysonlister skato_toyaku Shared Literature Resource of the Microbial Fitness Group - MPI Bremen iSEEM Papers recommended by the Roscoff Plankton Group Microbial-Ecology Translational Bioinformatics Roswell Cancer Crosstalk microbiology_nijmegen
	Four years of DNA barcoding: Current advances and prospects [My Copy] Infection, Genetics and Evolution, Vol. 8, No. 5. (September 2008), pp. 727-736. by L. Frezal, R. Leblois posted to barcode dna review species by inquil on 2009-03-16 17:38:04 as along with 2 people jlncdr dchughes
	Use of pyrosequencing and DNA barcodes to monitor variations in Firmicutes and Bacteroidetes communities in the gut microbiota of obese humans [My Copy] BMC Genomics, Vol. 9 (01 December 2008), 576. by Fabrice Armougom, Didier Raoult posted to barcode communities dna gut microbiota obese pyrosequencing by inquil on 2009-03-16 17:37:14 as
	DNA barcoding and the renaissance of taxonomy. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 12. (20 March 2007), pp. 4775-4776. by Scott E. Miller posted to barcode dna taxonomy by inquil on 2009-03-16 17:25:54 as along with 2 people and 2 groups vprieto dchughes G4ID Genetics-of-Gambling
	DNA barcoding the floras of biodiversity hotspots. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 8. (26 February 2008), pp. 2923-2928. by R. Lahaye, M. van der Bank, D. Bogarin, et al.J. Warner, F. Pupulin, G. Gigot, O. Maurin, S. Duthoit, T. G. Barraclough, V. Savolainen posted to barcode dna orchids plant by inquil on 2009-03-16 17:22:49 as
	DNA barcoding in animal species: progress, potential and pitfalls [My Copy] BioEssays, Vol. 29, No. 2. (2007), pp. 188-197. by John Waugh posted to animal barcode dna by inquil on 2009-03-16 17:19:46 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics [My Copy] Trends in Genetics, Vol. 23, No. 4. (April 2007), pp. 167-172. by M. Hajibabaei, G. Singer, P. Hebert, D. Hickey posted to barcode dna phylogenetics taxonomy by inquil on 2009-03-16 17:17:46 as along with 6 people vprieto jlncdr cam_webb dchughes TaqSys kwinset
	The tree of genomes: An empirical comparison of genome phylogeny reconstruction methods. [My Copy] BMC Evolutionary Biology, Vol. 8 (12 November 2008), 312. by Angela Mccann, James A. Cotton, James O. Mcinerney posted to genome methods phylogenomics phylogeny by inquil on 2009-03-16 15:07:30 as along with 4 people friendpine operon druvus treangen
	Tools for simulating evolution of aligned genomic regions with integrated parameter estimation [My Copy] Genome Biology, Vol. 9, No. 10. (08 October 2008), R147. by Avinash Varadarajan, Robert Bradley, Ian Holmes posted to comparison likelihood phylogeny software by inquil on 2009-03-16 15:06:54 as along with 9 people mhamada markusd nuin djkt treangen gjuggler pengchy druvus aprasad
	GENOME TREES AND THE NATURE OF GENOME EVOLUTION [My Copy] Annual Review of Microbiology, Vol. 59, No. 1. (2005), pp. 191-209. by Berend Snel, Martijn A. Huynen, Bas E. Dutilh posted to evolution genome genomics by inquil on 2009-03-16 15:01:06 as along with 5 people pablocarb ssgong knaseanka aprasad dayjm
	Comparative genomics and the study of evolution by natural selection [My Copy] Molecular Ecology, Vol. 17, No. 21. (November 2008), pp. 4586-4596. by N. Hans Ellegre posted to comparative evolution genomics neutral sequencing theory by inquil on 2009-03-16 14:54:20 as along with 6 people jlin haloin jasontsai aprasad natstreet druvus
	On the desirability of models for inferring genome phylogenies. [My Copy] Trends in microbiology, Vol. 14, No. 1. (January 2006), pp. 1-2. by J. O. McInerney posted to letter phylogeny by inquil on 2009-03-16 14:53:28 as
	Phylogenetic inference using whole genomes. [My Copy] Annual review of genomics and human genetics, Vol. 9, No. 1. (2008), pp. 217-231. by Bruce Rannala, Ziheng Yang posted to genomics phlogenomics review by inquil on 2009-03-16 14:52:44 as along with 9 people and 1 group katholt friendpine gwallau operon treangen druvus aprasad gjuggler zwang LabDros
	Assessment of phylogenomic and orthology approaches for phylogenetic inference. [My Copy] Bioinformatics (19 January 2007) by B E E. Dutilh, V van Noort, R T J M T. van der Heijden, T Boekhout, B Snel, M A A. Huynen posted to orthology phylogenomics phylogeny by inquil on 2009-03-16 14:51:33 as along with 1 person aprasad
	The Impact of Reticulate Evolution on Genome Phylogeny [My Copy] Systematic Biology, Vol. 57, No. 6., pp. 844-856. by Robert Beiko, W. Ford Doolittle, Robert Charlebois posted to evolution genome phylogeny reticulate by inquil on 2009-03-16 14:51:04 as
	A likelihood look at the supermatrix–supertree controversy [My Copy] Gene, Vol. 441, No. 1-2. (15 July 2009), pp. 119-125. by Fengrong Ren, Hiroshi Tanaka, Ziheng Yang posted to likelihood supermatrix supertree by inquil on 2009-03-16 14:50:25 as along with 2 people and 1 group calderonv skembel iSEEM
	Darwinian evolution in the light of genomics [My Copy] Nucl. Acids Res., Vol. 37, No. 4. (1 March 2009), pp. 1011-1034. by Eugene V. Koonin posted to darwin evolution genomics by inquil on 2009-03-16 14:49:53 as along with 23 people and 2 groups jasontsai vvoorr qayub michaelbarton polivares pawelsobko Zephyrus gwallau dayjm nurban natstreet druvus biomcgary mlog tomhebbron haloin VGreiff lizbiogen lp2 gjuggler guhjy sebastien_vigneau sjcockell Journal picks LabDros
	The prokaryotic tree of life: past, present...and future? [My Copy] Trends in Ecology & Evolution, Vol. 23, No. 5. (May 2008), pp. 276-281. by James O. Mcinerney, James A. Cotton, Davide Pisani posted to evolution life of phylogeny tree by inquil on 2009-03-16 14:49:06 as along with 3 people and 2 groups zwang balicea jlgreen Green Lab iSEEM
	Harnessing genomics for evolutionary insights. [My Copy] Trends in ecology & evolution (Personal edition), Vol. 24, No. 4. (6 April 2009), pp. 192-200. by Antonis Rokas, Patrick Abbot posted to evolution functional genomics microarrays sequencing by inquil on 2009-03-16 14:47:44 as along with 7 people biomcgary GustavoLacerda jlin robsyme druvus dchughes semrich
	Phylogenetic analysis of community assembly and structure over space and time [My Copy] Trends in Ecology & Evolution, Vol. 23, No. 11. (November 2008), pp. 619-630. by B. Emerson, R. Gillespie posted to communities ecology genomics microbiology by inquil on 2009-03-16 14:45:41 as along with 5 people and 3 groups anphony jlgreen skembel roosevelg cmm Savage Lab, UCLA iSEEM Rosenblum-Harmon Lab Papers
	Supertrees join the mainstream of phylogenetics [My Copy] Trends in Ecology & Evolution, Vol. 24, No. 1. (18 January 2009), pp. 1-3. by J. Cotton, M. Wilkinson posted to phylogenetics phylogenomics phylogeny supertree by inquil on 2009-03-16 14:38:41 as along with 4 people calderonv livingthingdan anphony skembel
	The supermatrix approach to systematics [My Copy] Trends in Ecology & Evolution, Vol. 22, No. 1. (January 2007), pp. 34-41. by A. Dequeiroz, J. Gatesy posted to phylogeny supermatrix systematics taxonoymy by inquil on 2009-03-16 14:38:05 as along with 4 people and 3 groups calderonv druvus skembel dchughes iSEEM G4ID Genetics-of-Gambling
	Model use in phylogenetics: nine key questions [My Copy] Trends in Ecology & Evolution, Vol. 22, No. 2. (February 2007), pp. 87-94. by Scot A. Kelchner, Michael A. Thomas posted to evolution model phylogenetics phylogeny by inquil on 2009-03-16 14:37:06 as along with 6 people and 2 groups ckenaley renewang aprasad dchughes russelld bpcusack G4ID Genetics-of-Gambling
	Barcodes for genomes and applications [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Fengfeng Zhou, Victor Olman, Ying Xu posted to barcode genomics taxonomy by inquil on 2009-03-16 12:55:12 as along with 6 people friendpine lptolik nuin taguchi druvus jmeppley
	Evolutionary history of bacteriophages with double-stranded DNA genomes [My Copy] Biology Direct, Vol. 2 (06 December 2007), 36. by Galina Glazko, Vladimir Makarenkov, Jing Liu, Arcady Mushegian posted to bacteriophage evolution phage phylogeny by inquil on 2009-03-16 11:50:21 as
	Bacteriophage genomics. [My Copy] Current opinion in microbiology (25 September 2008) by Graham F F. Hatfull posted to no-tag by inquil on 2009-03-16 11:49:15 as along with 1 person maren
	Phage evolution and ecology. [My Copy] Advances in applied microbiology, Vol. 67 (2009), pp. 1-45. by S. T. Abedon posted to ecology evolution phage by inquil on 2009-03-16 11:34:22 as
	Potential use of host-derived genome signatures to root virus phylogenies. [My Copy] Molecular phylogenetics and evolution, Vol. 49, No. 3. (December 2008), pp. 969-978. by M. P. Simmons posted to phylogenomics phylogeny virus by inquil on 2009-03-16 11:32:58 as
	Evolution without Species: The Case of Mosaic Bacteriophages [My Copy] Br J Philos Sci, Vol. 59, No. 4. (1 December 2008), pp. 745-765. by Gregory J. Morgan, Brad W. Pitts posted to evolution phage species by inquil on 2009-03-16 11:25:58 as

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phylogeny	14
evolution	11
genomics	10
barcode	7
dna	6
phylogenomics	6
phylogenetics	4
taxonomy	4
genome	3
metagenomics	3
phage	3
review	3
sequencing	3
species	3
supertree	3
communities	2
ecology	2
likelihood	2
marine	2
microbiology	2
phlogenomics	2
supermatrix	2
taxonoymy	2
animal	1
annotation	1
bacteria	1
bacteriophage	1
bateria	1
bioinformatics	1
comparative	1
comparison	1
darwin	1
drosophila	1
functional	1
gut	1
letter	1
life	1
metaproteomics	1
methods	1
microarrays	1
microbiome	1
microbiota	1
model	1
neutral	1
obese	1
of	1
orchids	1
orthology	1
plant	1
prokariotic	1
prokaryotic	1
proteomics	1
pyrosequencing	1
reconciliation	1
reticulate	1
software	1
symbiosis	1
systematics	1
theory	1
tree	1
virus	1

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