iris42's library 42 articles Export

	Computational prediction of methylation status in human genomic sequences [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 28. (11 July 2006), pp. 10713-10716. by Rajdeep Das, Nevenka Dimitrova, Zhenyu Xuan, et al.Robert A. Rollins, Fatemah Haghighi, John R. Edwards, Jingyue Ju, Timothy H. Bestor, Michael Q. Zhang posted to no-tag by iris42 on 2009-09-18 13:23:17 as along with 4 people suizifish eckart_bindewald olympos epigenetics
	Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome [My Copy] Nat Genet, Vol. 39, No. 4. (04 March 2007), pp. 457-466. by Michael Weber, Ines Hellmann, Michael B. Stadler, et al.Liliana Ramos, Svante Paabo, Michael Rebhan, Dirk Schubeler posted to no-tag by iris42 on 2009-09-18 11:19:50 as along with 11 people gderwin athma inesdesantiago aprickett myrtilus epigenetics bioyang vmsr bpcusack gjuggler rschulz
	Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters. [My Copy] PLoS Genet, Vol. 3, No. 10. (26 October 2007), pp. 2023-2036. by L. Shen, Y. Kondo, Y. Guo, et al.J. Zhang, L. Zhang, S. Ahmed, J. Shu, X. Chen, R. A. Waterland, J. P. Issa posted to no-tag by iris42 on 2009-09-18 10:06:32 as along with 3 people suizifish sebastien_vigneau zwang
	CpG islands – ‘A rough guide’ [My Copy] FEBS Letters, Vol. 583, No. 11. (05 June 2009), pp. 1713-1720. by R. Illingworth posted to no-tag by iris42 on 2009-09-18 09:57:03 as along with 2 people aprickett rschulz
	Profile analysis and prediction of tissue-specific CpG island methylation classes [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 116. by Christopher Previti, Oscar Harari, Igor Zwir, Coral D. Val posted to no-tag by iris42 on 2009-09-18 09:54:32 as along with 4 people dswan TRHvidsten rschulz reyez
	DNA motifs associated with aberrant CpG island methylation. [My Copy] Genomics, Vol. 87, No. 5. (May 2006), pp. 572-579. by F. Alex Feltus, Eva K. Lee, Joseph F. Costello, Christoph Plass, Paula M. Vertino posted to no-tag by iris42 on 2009-09-18 09:45:01 as
	Mining knowledge for the methylation status of CpG islands using alternating decision trees. [My Copy] Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, Vol. 2008 (2008), pp. 3787-3790. by Matthew B. Carson, Robert Langlois, Hui Lu posted to no-tag by iris42 on 2009-09-18 09:45:01 as
	A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 5. (31 January 2006), pp. 1412-1417. by Serge Saxonov, Paul Berg, Douglas L. Brutlag posted to no-tag by iris42 on 2009-09-18 09:45:01 as along with 3 people aprickett antonkratz saru
	CpG Island Mapping by Epigenome Prediction [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (8 June 2007), e110. by Christoph Bock, Jörn Walter, Martina Paulsen, Thomas Lengauer posted to no-tag by iris42 on 2009-09-18 09:45:01 as along with 11 people hagechouchin443 aprasad suizifish bpcusack kaarsinogen sebastien_vigneau zwang oelemento fpattyn rschulz inesdesantiago
	Predicting methylation status of CpG islands in the human brain [My Copy] Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2204-2209. by Fang Fang, Shicai Fan, Xuegong Zhang, Michael Q. Zhang posted to no-tag by iris42 on 2009-09-18 09:45:01 as along with 2 people suizifish kaarsinogen
	CpG islands or CpG clusters: how to identify functional GC-rich regions in a genome? [My Copy] BMC Bioinformatics, Vol. 10 (20 February 2009), 65. by Leng Han, Zhongming Zhao posted to no-tag by iris42 on 2009-09-18 09:45:01 as along with 1 person rdiaz
	CpG islands: algorithms and applications in methylation studies. [My Copy] Biochemical and biophysical research communications, Vol. 382, No. 4. (15 May 2009), pp. 643-645. by Zhongming Zhao, Leng Han posted to no-tag by iris42 on 2009-09-18 09:45:01 as
	Identifying CpG Islands by Different Computational Techniques. [My Copy] Omics : a journal of integrative biology, Vol. 13, No. 2. (23 January 2009), pp. 153-164. by Barbara Hutter, Martina Paulsen, Volkhard Helms posted to no-tag by iris42 on 2009-09-17 16:18:50 as along with 1 person rschulz
	rtracklayer: an R package for interfacing with genome browsers. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1841-1842. by Michael Lawrence, Robert Gentleman, Vincent Carey posted to no-tag by iris42 on 2009-09-14 15:41:46 as along with 16 people and 3 groups daveGerrard guhjy aprasad dswan cisevol shikin inesdesantiago daforerog ppgardne natstreet nuin brianb kshameer neils chrisamiller druvus Bioinformatics BergmanLab Journal picks
	Computational epigenetics [My Copy] Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 1-10. by Christoph Bock, Thomas Lengauer posted to no-tag by iris42 on 2009-09-14 13:48:21 as along with 17 people and 2 groups operon pawelsobko huali suizifish mmartin sebastien_vigneau ealloza djkt frohike timflutre cjeans epigenetics cabbagezs barriot Ema Thomasah guhjy SIMR bioinformatics Bioinformatics
	BSMAP: whole genome bisulfite sequence MAPping program [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 232. by Yuanxin Xi, Wei Li posted to short reads methylation by iris42 on 2009-09-07 09:15:21 as along with 2 people gdb rschulz
	Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning [My Copy] Nature, Vol. 452, No. 7184. (17 February 2008), pp. 215-219. by Shawn J. Cokus, Suhua Feng, Xiaoyu Zhang, et al.Zugen Chen, Barry Merriman, Christian D. Haudenschild, Sriharsa Pradhan, Stanley F. Nelson, Matteo Pellegrini, Steven E. Jacobsen posted to reads short by iris42 on 2009-04-14 13:06:17 as along with 15 people and 1 group druvus darian iamlily1046 ychang0918 rschulz natstreet mmartin hkuhn kengg usagi-kirin djkt ghattem epigenetics mdimon slonik KCL & UCL Bioinformatics
	An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs) [My Copy] Genome Research, Vol. 18, No. 9. (24 September 2008), pp. 1518-1529. by Vardhman K. Rakyan, Thomas A. Down, Natalie P. Thorne, et al.Paul Flicek, Eugene Kulesha, Stefan GrÃ¤f, Eleni M. Tomazou, Liselotte BÃ¤ckdahl, Nathan Johnson, Marlis Herberth, Kevin L. Howe, David K. Jackson, Marcos M. Miretti, Heike Fiegler, John C. Marioni, Ewan Birney, Tim J. P. Hubbard, Nigel P. Carter, Simon TavarÃ©, Stephan Beck posted to no-tag by iris42 on 2008-11-20 12:12:04 as along with 8 people suizifish timhubbard abizar huiminC oelemento rschulz vega niallhaslam
	Probabilistic base calling of Solexa sequencing data. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 431. by Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef posted to reads short by iris42 on 2008-11-13 09:37:39 as along with 16 people and 1 group heliopais orzenil n00c dakelley jfr usagi-kirin magusina malcook natstreet druvus abizar caseybrown reyez pengchy waszak nuin SIMR bioinformatics
	Discovering microRNAs from deep sequencing data using miRDeep [My Copy] Nat Biotech, Vol. 26, No. 4. (April 2008), pp. 407-415. by Marc R. Friedlander, Wei Chen, Catherine Adamidi, et al.Jonas Maaskola, Ralf Einspanier, Signe Knespel, Nikolaus Rajewsky posted to no-tag by iris42 on 2008-10-26 09:26:33 as along with 13 people and 3 groups hzoltan thegoose2 natstreet fishtank ealloza GustavoLacerda tharris tmmurali giovanni stajich jfr heliopais gdb C. elegans / WormBase Mycology microRNA
	Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer [My Copy] PLoS Comput Biol, Vol. 4, No. 4. (25 April 2008), e1000051. by Ali Bashir, Stanislav Volik, Colin Collins, Vineet Bafna, Benjamin J. Raphael posted to paired-end reads short by iris42 on 2008-10-09 01:36:46 as along with 5 people dakelley jessopher APRegier matthewsuderman vega
	Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data. [My Copy] Source code for biology and medicine, Vol. 3 (2008) by N. J. Parker, A. G. Parker posted to reads short by iris42 on 2008-06-09 12:33:32 as along with 2 people orzenil GustavoLacerda
	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to reads short by iris42 on 2008-06-09 12:31:49 as along with 42 people and 3 groups ajsferreira vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn druvus natstreet nmohelli stajich farhat tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	Tracembler - software for in-silico chromosome walking in unassembled genomes [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (09 May 2007), 151. by Qunfeng Dong, Matthew Wilkerson, Volker Brendel posted to reads short by iris42 on 2008-06-09 12:31:11 as along with 3 people cmzmasek druvus APRegier
	Short read fragment assembly of bacterial genomes [My Copy] Genome Research, Vol. 18, No. 2. (1 February 2008), pp. 324-330. by Mark J. Chaisson, Pavel A. Pevzner posted to reads short by iris42 on 2008-06-09 12:28:40 as along with 17 people n00c pachorip APRegier thegoose2 dakelley Neeperando hpaces idoerg druvus jasontsai acn orzenil azazello GustavoLacerda dandaman caseybrown tharris
	Assembling millions of short DNA sequences using SSAKE [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 500-501. by Rene L. Warren, Granger G. Sutton, Steven J. M. Jones, Robert A. Holt posted to reads short by iris42 on 2008-06-09 12:27:48 as along with 13 people katholt jbhiatt jsatkosk AaronDarling floatingpoint idoerg caseybrown druvus natstreet azazello nmohelli Neeperando yoonk
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to reads short by iris42 on 2008-06-09 12:26:56 as along with 23 people and 1 group ajsferreira n00c carlk jmanning2k APRegier pachorip jonilaserson operon thegoose2 natstreet AaronDarling mhz dakelley druvus stajich azazello hpaces tharris jwhitney Neeperando sharpton GustavoLacerda GeeSharpMinor Mycology
	Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies [My Copy] PLoS ONE, Vol. 2, No. 5. (2007), e484. by Andreas Sundquist, Mostafa Ronaghi, Haixu Tang, Pavel Pevzner, Serafim Batzoglou posted to reads short by iris42 on 2008-06-09 12:26:10 as along with 12 people and 1 group n00c APRegier jessopher natstreet druvus idoerg dakelley GustavoLacerda orzenil guhjy azazello nedwards gatech-compgenomics
	SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. [My Copy] Genome research, Vol. 17, No. 11. (November 2007), pp. 1697-1706. by J. C. Dohm, C. Lottaz, T. Borodina, H. Himmelbauer posted to reads short by iris42 on 2008-06-09 12:25:22 as along with 16 people and 2 groups operon n00c robsyme dakelley acn druvus nmohelli natstreet timflutre stajich ghattem azazello GustavoLacerda niallhaslam flexer jwhitney DeNovoAssembly-SIMR Mycology
	De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer [My Copy] Genome Research, Vol. 18, No. 5. (10 May 2008), pp. 802-809. by David Hernandez, Patrice FranÃ§ois, Laurent Farinelli, Magne Ãsterã¥s, Jacques Schrenzel posted to reads short by iris42 on 2008-04-01 15:31:44 as along with 15 people and 4 groups n00c GeeSharpMinor pachorip operon druvus dakelley acn nmohelli GustavoLacerda jmeppley stajich azazello Katje balicea Neeperando DeNovoAssembly-SIMR microbiology_nijmegen Mycology gatech-compgenomics
	A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees [My Copy] PLoS Biol, Vol. 3, No. 6. (3 May 2005), e170. by Rasmus Nielsen, Carlos Bustamante, Andrew G. Clark, et al.Stephen Glanowski, Timothy B. Sackton, Melissa J. Hubisz, Adi Fledel-Alon, David M. Tanenbaum, Daniel Civello, Thomas J. White, Sninsky, Mark D. Adams, Michele Cargill posted to hars by iris42 on 2008-03-06 13:56:26 as along with 9 people and 3 groups provero gjuggler renewang stevanspringer jwortman bpb penka hdopazo djkt Nie FAB-lab BioinfoCIPF
	Initial sequence of the chimpanzee genome and comparison with the human genome. [My Copy] Nature, Vol. 437, No. 7055. (1 September 2005), pp. 69-87. by Chimpanzee Sequencing and Analysis Consortium posted to hars by iris42 on 2008-03-06 13:55:27 as along with 12 people and 3 groups rshe ThomasDOtto cannin chrn aprasad great_apes indigoviolet dullhunk djkt JeffR100 Garamonfok rvosa biodiversity_conservation EisenLab FAB-lab
	Localizing Recent Adaptive Evolution in the Human Genome [My Copy] PLoS Genetics, Vol. 3, No. 6. (1 June 2007), e90. by Scott H. Williamson, Melissa J. Hubisz, Andrew G. Clark, Bret A. Payseur, Carlos D. Bustamante, Rasmus Nielsen posted to hars by iris42 on 2008-03-06 13:54:00 as along with 11 people and 2 groups athma ilyashl renewang mbj brant dpollard madhadron candypmcg shoshin emarker dmc EisenLab Durbin group
	A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 17. (1 September 2006), pp. 2122-2128. by C. Zhang, D. K. Bailey, T. Awad, et al.G. Liu, G. Xing, M. Cao, V. Valmeekam, J. Retief, H. Matsuzaki, M. Taub, M. Seielstad, G. C. Kennedy posted to hars by iris42 on 2008-03-06 13:52:42 as along with 4 people and 1 group ilyashl renewang coela hdopazo BioinfoCIPF
	Positive natural selection in the human lineage. [My Copy] Science (New York, N.Y.), Vol. 312, No. 5780. (16 June 2006), pp. 1614-1620. by P. C. Sabeti, S. F. Schaffner, B. Fry, et al.J. Lohmueller, P. Varilly, O. Shamovsky, A. Palma, T. S. Mikkelsen, D. Altshuler, E. S. Lander posted to hars by iris42 on 2008-03-06 13:50:59 as along with 11 people and 4 groups memerman ilyashl kndiaye gjuggler dchughes cmm larios hdopazo djkt ramensky jasonflannick FAB-lab G4ID BioinfoCIPF Genetics-of-Gambling
	Genome-wide detection and characterization of positive selection in human populations [My Copy] Nature, Vol. 449, No. 7164. (18 October 2007), pp. 913-918. by Pardis C. Sabeti, Patrick Varilly, Ben Fry, et al.Jason Lohmueller, Elizabeth Hostetter, Chris Cotsapas, Xiaohui Xie, Elizabeth H. Byrne, Steven A. Mccarroll, Rachelle Gaudet, Stephen F. Schaffner, Eric S. Lander posted to hars by iris42 on 2008-03-06 13:50:31 as along with 16 people and 1 group memerman daforerog marywaye Zephyrus ilyashl jdbowes renewang xianjun misonneh brian dchughes djkt ramensky hms ryanraaum jasonflannick R.E.A.D
	A Map of Recent Positive Selection in the Human Genome. [My Copy] PLoS Biol, Vol. 4, No. 3. (7 March 2006) by Benjamin F F. Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K K. Pritchard posted to hars by iris42 on 2008-03-06 13:49:47 as along with 24 people and 7 groups athma ilyashl renewang diamantis stevanspringer kentsis bpb balajis indigoviolet ejeffery pradiptaray madhadron breden tiago larios ashandanj hdopazo livingthingdan djkt mbeautru grahamc suizan shoshin dmc Bioinformatics EisenLab FAB-lab SFUAntibodyResearch BioinfoCIPF livingthing Durbin group
	Natural selection on protein-coding genes in the human genome [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1153-1157. by Carlos D. Bustamante, Adi Fledel-Alon, Scott Williamson, et al.Rasmus Nielsen, Melissa Todd Hubisz, Stephen Glanowski, David M. Tanenbaum, Thomas J. White, John J. Sninsky, Ryan D. Hernandez, Daniel Civello, Mark D. Adams, Michele Cargill, Andrew G. Clark posted to hars by iris42 on 2008-03-06 13:49:08 as along with 25 people and 5 groups JAShapiro tomhebbron VGreiff ilyashl athma provero jimithystok gjuggler renewang jo_davies stevanspringer operon jwortman aprasad dayjm balajis marcius dpollard hdopazo djkt JBEgwa01 ramensky Garamonfok dmc shoshin EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
	Interrogating a High-Density SNP Map for Signatures of Natural Selection [My Copy] Genome Research, Vol. 12, No. 12. (1 December 2002), pp. 1805-1814. by Joshua M. Akey, Ge Zhang, Kun Zhang, Li Jin, Mark D. Shriver posted to hars by iris42 on 2008-03-06 13:48:41 as along with 5 people and 1 group Garamonfok renewang kieran101 hdopazo JBEgwa01 BioinfoCIPF
	Forces Shaping the Fastest Evolving Regions in the Human Genome [My Copy] PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e168. by Katherine S. Pollard, Sofie R. Salama, Bryan King, et al.Andrew D. Kern, Tim Dreszer, Sol Katzman, Adam Siepel, Jakob S. Pedersen, Gill Bejerano, Robert Baertsch, Kate R. Rosenbloom, Jim Kent, David Haussler posted to hars by iris42 on 2008-03-06 13:48:02 as along with 6 people and 2 groups balicea sriesenfeld skembel eskay nickluscombe rvosa EBI-regulation FAB-lab
	Fast-evolving non-coding sequences in the human genome [My Copy] Genome Biology, Vol. 8 (19 June 2007), R118. by Christine P. Bird, Barbara E. Stranger, Maureen Liu, et al.Daryl J. Thomas, Catherine E. Ingle, Claude Beazley, Webb Miller, Matthew E. Hurles, Emmanouil T. Dermitzakis posted to hars by iris42 on 2008-03-06 13:45:11 as along with 8 people and 2 groups balicea sriesenfeld xianjun djkt Stew jlangdon cisevol bpcusack EisenLab cis-regulatory-evolution
	Accelerated Evolution of Conserved Noncoding Sequences in Humans [My Copy] Science, Vol. 314, No. 5800. (3 November 2006), 786. by Shyam Prabhakar, James P. Noonan, Svante Paabo, Edward M. Rubin posted to hars by iris42 on 2008-03-06 13:40:57 as along with 7 people Garamonfok djkt balicea Archaeogenetics joshuashen rrhudson bpcusack

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