iris_2001's library 602 articles Export

	Assessing the druggability of protein-protein interactions by a supervised machine-learning method [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (25 August 2009), 263. by Nobuyoshi Sugaya, Kazuyoshi Ikeda posted to ppi druggability by iris_2001 on 2009-09-17 08:25:52 as along with 2 people higueruelo phoenixzxl
	Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 290. by Marcio Acencio, Ney Lemke posted to topology of network genes featuresprediction essential by iris_2001 on 2009-09-17 08:19:09 as along with 3 people kshameer thegoose reyez
	Computational prediction of protein-protein interactions. [My Copy] Molecular biotechnology, Vol. 38, No. 1. (20 January 2008), pp. 1-17. by Lucy Skrabanek, Harpreet K. Saini, Gary D. Bader, Anton J. Enright posted to review ppi by iris_2001 on 2009-09-14 07:59:35 as along with 7 people jperkins kgutwin kiekyon jwhitney ruvido guhjy penpen926
	Automated knowledge extraction for decision model construction: a data mining approach [My Copy] In Proceedings of AMIA2003 (2003) by A. L. Zhu, J. Li, T. Y. Leong posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Dynamic pattern evolution on scale-free networks [My Copy] PNAS, Vol. 102, No. 29. (2005), pp. 10052-10057. by Haijun Zhou, Reinhard Lipowsky posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Neural network classifiers and gene selection methods for microarray data on human lung adenocarcinoma [My Copy] In CAMDA03 (2003), pp. 63-67. by G. Zheng, E. Olusegun, G. Narasimhan posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Predicting co-complexed protein pairs using genomic and proteomic data integration [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (2004) by L. V. Zhang, S. L. Wong, O. D. King, F. P. Roth posted to analysis biologymethods cerevisiae computational data databases decision expression fungalbiosynthesisgenetics fungalgenetics gene genes genomicsstatistics govt interaction mappingmethodsstatistics mass non-us numerical of predictive protein proteinsmetabolism proteomicsstatistics regulation research rna saccharomyces spectrum structural support system techniques tests thesis-import-09-01-04 trees two-hybrid value by iris_2001 on 2009-01-04 10:36:55 as
	Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network [My Copy] J Biol, Vol. 4, No. 2. (2005) by L. V. Zhang, O. D. King, S. L. Wong, et al.D. S. Goldberg, A. H. Tong, G. Lesage, B. Andrews, H. Bussey, C. Boone, F. P. Roth posted to motifs ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Redundancy based feature selection for microarray data [My Copy] In Proceedings of KDD'04 (2004) by L. Yu, H. Liu posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Feature selection for high-dimensional data: A fast correlation-based filter solution [My Copy] In Proceedings of the Twentieth International Conference on Machine Learning (ICML-2003) (2003) by L. Yu, H. Liu posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Computational Approaches for Predicting Protein---Protein Interactions: A Survey [My Copy] J. Med. Syst., Vol. 30, No. 1. (2006), pp. 39-44. by Jingkai Yu, Farshad Fotouhi posted to ppi review thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Functional and topological characterization of protein interaction networks [My Copy] Proteomics, Vol. 4, No. 4. (2004), pp. 928-42. by S. H. Yook, Z. N. Oltvai, A. L. Barabasi posted to algorithms biology cerevisiaemetabolism computational databases macromolecular protein proteome saccharomyces substances thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Gene network interconnectedness and the generalized topological overlap measure [My Copy] BMC Bioinformatics, Vol. 8 (2007) by Andy Yip, Steve Horvath posted to gene interconnectednesstopological measure network overlap thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 16. (2004) by Yeger E. Lotem, S. Sattath, N. Kashtan, et al.S. Itzkovitz, R. Milo, R. Y. Pinter, U. Alon, H. Margalit posted to genetics interaction motifs network network_motif networks p2p protein-protein regulation regulatory sysbio thesis-import-09-01-04 transcription yeast by iris_2001 on 2009-01-04 10:36:55 as
	Constructing free-energy approximations and generalized belief propagation algorithms [My Copy] Information Theory, IEEE Transactions on, Vol. 51, No. 7. (2005), pp. 2282-2312. by J. S. Yedidia, W. T. Freeman, Y. Weiss posted to approximations belief generalized propagationfree-energy thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Physical network models [My Copy] J Comput Biol, Vol. 11, No. 2-3. (2004), pp. 243-62. by C. H. Yeang, T. Ideker, T. Jaakkola posted to biology computational computer data expression gene genetic govt interpretation networks neural non-phs non-us phs probability regulation research statistical support thesis-import-09-01-04 transcription us yeastsgeneticsphysiology by iris_2001 on 2009-01-04 10:36:55 as
	A Comparative Study on Feature Selection in Text Categorization [My Copy] In The 14th International Conference on Machine Learning ICML97 (1997) by Y. Yang, J. O. Pedersen posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Supervised enzyme network inference from the integration of genomic data and chemical information [My Copy] Bioinformatics, Vol. 21 Suppl 1 (2005) by Y. Yamanishi, J. P. Vert, M. Kanehisa posted to data fusion inference network supervised thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Protein network inference from multiple genomic data: a supervised approach [My Copy] Bioinformatics, Vol. 20 Suppl 1 (2004) by Y. Yamanishi, J. P. Vert, M. Kanehisa posted to approach inferencesupervised network protein thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Discovering disease genes by topological features in human protein-protein interaction network [My Copy] Bioinformatics (2006) by Jianzhen Xu, Yongjin Li posted to network ppi thesis-import-09-01-04 topologysignature by iris_2001 on 2009-01-04 10:36:55 as
	Biomarker identification by feature wrappers [My Copy] Genome Res, Vol. 11, No. 11. (2001), pp. 1878-87. by M. Xiong, X. Fang, J. Zhao posted to algorithms biologicalgenetics diseaseclassificationgenetics genetic genotype govt humans markers models phenotype phs predisposition research statistical support thesis-import-09-01-04 to tumor us by iris_2001 on 2009-01-04 10:36:55 as
	Topology and weights in a protein domain interaction network--a novel way to predict protein interactions [My Copy] BMC Genomics, Vol. 7 (2006) by S. Wuchty posted to domain interaction network ppitopology thesis-import-09-01-04 weightsprotein by iris_2001 on 2009-01-04 10:36:55 as
	Evolution and Topology in the Yeast Protein Interaction Network [My Copy] Genome Res., Vol. 14, No. 7. (2004), pp. 1310-1314. by Stefan Wuchty posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations [My Copy] Nucleic Acids Res, Vol. 34, No. 7. (2006), pp. 2137-50. by X. Wu, L. Zhu, J. Guo, D. Y. Zhang, K. Lin posted to biological controlled databases fungal genetic genome interaction mappingmethodsstandards models protein proteinsgeneticsmetabolism thesis-import-09-01-04 vocabulary by iris_2001 on 2009-01-04 10:36:55 as
	Prediction of functional modules based on comparative genome analysis and Gene Ontology application [My Copy] Nucleic Acids Research, Vol. 33, No. 9. (2005), pp. 2822-2837. by Hongwei Wu, Zhengchang Su, Fenglou Mao, Victor Olman, Ying Xu posted to analysis function gene genome ontology prediction protein thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	KBA: Kernel Boundary Alignment Considering Imbalanced Data Distribution [My Copy] IEEE Transactions on Knowledge and Data Engineering (TKDE), Vol. 17, No. 6. (2005), pp. 786-795. by Gang Wu, Edward Y. Chang posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Class-Boundary Alignment for Imbalanced Dataset Learning [My Copy] In Workshop on Learning from Imbalanced Datasets in International Conference on Machine Learning (ICML) (2003) by Gang Wu, Edward Y. Chang posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Finding Communities in Linear Time: A Physics Approach [My Copy] (2003) by Fang Wu, Bernardo Huberman posted to 2003 algorithm clustering graph-theory networks thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	An Efficient Approach to Detect a Protein Community from a Seed [My Copy] In Computational Intelligence in Bioinformatics and Computational Biology, 2005. CIBCB '05. Proceedings of the 2005 IEEE Symposium on (2005), pp. 1-7. by D. D. Wu, Xiaohua Hu posted to community network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Organelle DB: an updated resource of eukaryotic protein localization and function [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (2007), pp. D810-4. by N. Wiwatwattana, C. M. Landau, G. J. Cope, G. A. Harp, A. Kumar posted to animals cellschemistry cerevisiae cerevisiaeultrastructure complexesanalysis computer databases eukaryotic graphics humans interface internet multiprotein organelleschemistry protein proteinsanalysis proteinsanalysischemistryphysiology saccharomyces thesis-import-09-01-04 user-computer by iris_2001 on 2009-01-04 10:36:54 as
	Organelle DB: a cross-species database of protein localization and function [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (2005), pp. D598-604. by N. Wiwatwattana, A. Kumar posted to animals arabidopsis caenorhabditis cellschemistry cellular cerevisiae databases drosophila elegans eukaryotic fluorescence humans interface mice microscopy organelleschemistry protein proteinsanalysischemistryphysiology saccharomyces structureschemistry thesis-import-09-01-04 user-computer by iris_2001 on 2009-01-04 10:36:54 as
	Scaling the Kernel Function to Improve Performance of the Support Vector Machine [My Copy] In Advances in Neural Networks -ISNN2005, Vol. LNCS 3496 (2005), pp. 831-836. by P. Williams, S. Li, J. F. Feng, S. Wu posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	A method for finding communities of related genes [My Copy] Proc Natl Acad Sci U S A, Vol. 101 Suppl 1 (2004), pp. 5241-5248. by D. M. Wilkinson, B. A. Huberman posted to communitiesrelated genes thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	A Markov Random Field Model for Network-based Analysis of Genomic Data [My Copy] Bioinformatics (2007) by Zhi Wei, Hongzhe Li posted to analysis data geomic mrf network-based thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	A system for quantifying dynamic protein interactions defines a role for Herceptin in modulating ErbB2 interactions [My Copy] PNAS, Vol. 103, No. 50. (2006), pp. 19063-19068. by T. S. Wehrman, W. J. Raab, C. L. Casipit, R. Doyonnas, J. H. Pomerantz, H. M. Blau posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Collective dynamics of 'small-world' networks [My Copy] Nature, Vol. 393, No. 6684. (1998), pp. 440-442. by D. J. Watts, S. H. Strogatz posted to network ppi small-world thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Data merging for integrated microarray and proteomic analysis [My Copy] Brief Funct Genomic Proteomic, Vol. 5, No. 4. (2006), pp. 261-272. by Katrina M. Waters, Joel G. Pounds, Brian D. Thrall posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Logit models and logistic regressions for social networks: I. An introduction to Markov graphs andp [My Copy] Psychometrika, Vol. 61, No. 3. (1996), pp. 401-425. by Stanley Wasserman, Philippa Pattison posted to graphs logistic logit markov model networks regressions social thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as along with 1 person podles
	A New Method to Measure the Semantic Similarity of GO Terms [My Copy] Bioinformatics (2007) by James Z. Wang, Zhidian Du, Rapeeporn Payattakool, Philip S. Yu, Chin F. Chen posted to gene ontology semantic similaritygo thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	A protein interaction network for pluripotency of embryonic stem cells [My Copy] Nature, Vol. 444, No. 7117. (2006), pp. 364-8. by J. Wang, S. Rao, J. Chu, et al.X. Shen, D. N. Levasseur, T. W. Theunissen, S. H. Orkin posted to animals binding cellsmetabolism complexesgeneticsmetabolism dna-binding embryonic homeodomain humans immunoprecipitation interference mice multiprotein of pluripotent protein proteinsmetabolism reproducibility results rna stem thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Local Probabilistic Models for Link Prediction [My Copy] In The IEEE International Conference on Data Mining 2007 (ICDM07) (2007) by Chao Wang, Venu Satuluri, Srinivasan Parthasarathy posted to link prediction thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	How the global structure of protein interaction networks evolves [My Copy] Proc Biol Sci, Vol. 270, No. 1514. (2003), pp. 457-466. by A. Wagner posted to evolution global network ppi structure thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Comparative assessment of large-scale data sets of protein-protein interactions [My Copy] Nature, Vol. 417, No. 6887. (2002), pp. 399-403. by C. von Mering, R. Krause, B. Snel, et al.M. Cornell, S. G. Oliver, S. Fields, P. Bork posted to assessment ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	STRING: known and predicted protein-protein associations, integrated and transferred across organisms [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (2005) by C. von Mering, L. J. Jensen, B. Snel, et al.S. D. Hooper, M. Krupp, M. Foglierini, N. Jouffre, M. A. Huynen, P. Bork posted to associations integrated ppi string thesis-import-09-01-04 transferred by iris_2001 on 2009-01-04 10:36:54 as
	Efficient Graph-Based Energy Minimization Methods in Computer Vision [My Copy] (1999) by Olga Veksler posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Global protein function prediction from protein-protein interaction networks [My Copy] Nat Biotechnol, Vol. 21, No. 6. (2003), pp. 697-700. by A. Vazquez, A. Flammini, A. Maritan, A. Vespignani posted to function network ppi prediction protein thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Modeling of protein interaction networks [My Copy] (2001) by A. Vazquez, A. Flammini, A. Maritan, A. Vespignani posted to modelling network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	The topological relationship between the large-scale attributes and local interaction patterns of complex networks [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 52. (2004), pp. 17940-5. by A. Vazquez, R. Dobrin, D. Sergi, J. P. Eckmann, Z. N. Oltvai, A. L. Barabasi posted to algorithms analysis biological biology cerevisiaephysiology cluster coliphysiology computational computer databases escherichia genetic metabolism models protein proteinsmetabolism saccharomyces simulation theoretical thesis-import-09-01-04 transcription by iris_2001 on 2009-01-04 10:36:54 as
	Statistical Learning Theory. [My Copy] (1998.) by V. N. Vapnik posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Information Retrieval [My Copy] (1979) by C. J. van Rijsbergen posted to thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as

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thesis-import-09-01-04	407
ppi	153
network	124
gene	67
research	67
protein	65
govt	64
support	64
prediction	59
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cell	15
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reproducibility	14
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transcription	14
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motifs	12
numerical	12
pattern	12
relational	12
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graph	11
integration	11
profilingmethods	11
proteinsgeneticsmetabolism	11
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amino	10
cluster	10
dna	10
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processing	8
proteinmethods	8
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transduction	4
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citric	2
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negative	2
neighbor	2
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networ	2
networkinfer	2
networksquasibipartitesquasicliques	2
networktopologyclustering	2
noisyor	2
nuclear	2
oncogenes	2
organ	2
organelleschemistry	2
organisms	2
overlap	2
p2p	2
paradox	2
pathways	2
peptide	2
phenomena	2
phylogenetic	2
physiological	2
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ppinetwork	2
ppitopology	2
principle	2
prm	2
probabilistic	2
probability	2
propagationfree-energy	2
proteinsanalysis	2
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proteinsbiosynthesisgenetics	2
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proteinschemistryclassificationmetabolism	2
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publications	2
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r50	2
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relationalmodels	2
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rmn	2
roc	2
rosetta	2
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seedy	2
semantics	2
sequences	2
signalling	2
similaritygo	2
singal-transduction	2
small-world	2
source	2
stem	2
stickiness	2
stone	2
strategyconnectivityaging	2
string	2
structure-activity	2
structurenetworks	2
subcellular	2
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sum-product	2
supervised	2
svdd	2
svms	2
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sysbio	2
time	2
topologysignature	2
topologyweighted	2
transferred	2
treatment	2
treedistance	2
trees	2
trw-s	2
unsupervised	2
use	2
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walks	2
web	2
weightsprotein	2
2003	1
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acuteclassificationdrug	1
acuteclassificationgeneticspathology	1
adaptation	1
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arabidopsisgenetics	1
as	1
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b	1
bacterial	1
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western	1
yeastschemistrygenetics	1
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yeastsgeneticsmetabolism	1
yeastsgeneticsphysiology	1
yeastsphysiology	1

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