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iris_2001's library [185 articles]

Recent papers added to iris_2001's library.
  • Clustering by Passing Messages Between Data Points.
    Science (11 January 2007)
    by Brendan JJ Frey, Delbert Dueck
    posted to propagation belief by iris_2001 on 2008-07-23 08:26:08 as ** along with 25 people and 2 groups soundray XIANG matjes johnkork kuhn xtizon jfr jmeppley stevedebacker arjen sterovetta sdvillal nickluscombe rdiaz ianturton macle bluto rsantana grahamc ccr hexuming worldsun dimatura paulovn daniel51 EBI-regulation ParkinsonLab_at_MaRS
  • Protein interaction maps for complete genomes based on gene fusion events.
    Nature, Vol. 402, No. 6757. (4 November 1999), pp. 86-90.
    by AJ Enright, I Iliopoulos, NC Kyrpides, CA Ouzounis
    posted to gene fusion by iris_2001 on 2008-07-23 07:00:57 as ** along with 4 people carlk balajis ruvido selrac
  • Detecting Protein Function and Protein-Protein Interactions from Genome Sequences
    Science, Vol. 285, No. 5428. (30 July 1999), pp. 751-753.
    by Edward M Marcotte, Matteo Pellegrini, Ho-Leung Ng, Danny W Rice, Todd O Yeates, David Eisenberg
    posted to stone rosetta methods gene fusion by iris_2001 on 2008-07-23 06:57:19 as ** along with 7 people and 1 group lfriedl balajis opheliav gurkanbebek ruvido cjeans Evangelia kdl
  • Message-Passing Algorithms for the Prediction of Protein Domain Interactions from Protein-Protein Interaction Data
    Bioinformatics (17 July 2008), btn366.
    by Mudassar Iqbal, Alex A Freitas, Colin G Johnson, Massimo Vergassola
    posted to propagation ppi ddi belief by iris_2001 on 2008-07-23 06:14:10 as ** along with 1 person phoenixzxl
  • ROC Graphs: Notes and Practical Considerations for Researchers
    Machine Learning (2004)
    by T Fawcett
    posted to roc r50 by iris_2001 on 2008-07-10 07:05:47 as ** along with 2 people and 1 group stanley lbatista LIVIA
  • Network inference, analysis, and modeling in systems biology.
    The Plant cell, Vol. 19, No. 11. (November 2007), pp. 3327-3338.
    by R Albert
    posted to review network analysis by iris_2001 on 2008-05-05 10:00:36 as **
  • Graph-based methods for analysing networks in cell biology.
    Brief Bioinform, Vol. 7, No. 3. (September 2006), pp. 243-255.
    by T Aittokallio, B Schwikowski
    posted to network analysis by iris_2001 on 2008-05-05 09:59:14 as ** along with 5 people and 2 groups barry tmmurali aswin grahamc jmarcelino structural_bioinformatics Bioinformatics
  • A mixture of feature experts approach for protein-protein interaction prediction.
    BMC bioinformatics, Vol. 8 Suppl 10 (2007)
    by Y Qi, J Klein-Seetharaman, Z Bar-Joseph
    posted to regression prediction ppi logistic by iris_2001 on 2008-05-02 07:38:21 as **
  • Hierarchical Organization of Modularity in Metabolic Networks
    Science, Vol. 297, No. 5586. (30 August 2002), pp. 1551-1555.
    by E Ravasz, AL Somera, DA Mongru, ZN Oltvai, AL Barabasi
    posted to topology ppi network modularity by iris_2001 on 2008-04-30 07:49:55 as ** along with 14 people and 9 groups ellakat shivaram alexg yish wnpx ddahlem neveaire bigbossman griota jeremymiller natstreet karfunkel Evangelia stefanoallesina Biostatistics Computational-Genomics Bioinformatics mathgamespatterns Neuroscience dtl vds-arg eni GeschwindLab
  • Lethality and centrality in protein networks
    Nature, Vol. 411, No. 6833. (3 May 2001), pp. 41-42.
    by H Jeong, SP Mason, AL Barabasi, ZN Oltvai
    posted to topology ppi network by iris_2001 on 2008-04-30 07:45:34 as ** along with 11 people and 3 groups kuhn cmmorel nickluscombe gurkanbebek jeremymiller timflutre ruvido gcalda grahamc lpfernandes Evangelia EBI-regulation GeschwindLab ParkinsonLab_at_MaRS
  • Collective dynamics of 'small-world' networks.
    Nature, Vol. 393, No. 6684. (4 June 1998), pp. 440-442.
    by DJ Watts, SH Strogatz
    posted to small-world ppi network by iris_2001 on 2008-04-30 07:26:05 as ** along with 66 people and 12 groups ddahlem jago Borelli jpbarrette takeha-e jsanpedro ladamic beete ulmer jotwin livingthingdan teferet camster G_RAM kewms KAllendoerfer AdrianMiles mague alexisgallagher Rsavi zqshen shivaram cmmorel Shirakawa tolosoft nithya nygaard balicea dumpa matteodellamico yoh dullhunk voiklis eldaly ianturton merazzle maqbes muraken zono zeroknowledge choonpeng cerkut xinian mmartin king amac adriandefroment RafG radale jaspervoskuilen timflutre pbrandao sugaya ruvido rsantana cjeans fbaroni michaelmampaey rcrane ransombriggs suizan lpfernandes sbianco kb kaks stefanoallesina dbk-lab GraphVis UCD_SmallWorldGraphVis Semantic-Social-Networks microRNA Web2 Soslab CooperationStudies ColDyn contact-id ADMiRes 801
  • Assessing the limits of genomic data integration for predicting protein networks.
    Genome Res, Vol. 15, No. 7. (July 2005), pp. 945-953.
    by LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein
    posted to source prediction ppi multiple feature data by iris_2001 on 2008-04-29 14:29:30 as ** along with 13 people and 2 groups phoenixzxl carlk brianb okarsligil lfriedl balajis maryee opheliav wnpx mbeautru eukfn grahamc nedwards kdl Bioinformatics
  • Conserved network motifs allow protein-protein interaction prediction
    Bioinformatics, Vol. 20, No. 18. (2004), 3346.
    by Istvan Albert, Reka Albert
    posted to prediction ppi motif by iris_2001 on 2008-04-29 09:52:49 as ** along with 2 people cjeans Evangelia
  • Labeling network motifs in protein interactomes for protein function prediction
    Data Engineering, 2007. ICDE 2007. IEEE 23rd International Conference on (2007), pp. 546-555.
    by Jin Chen, Wynne Hsu, Mong L Lee, See-Kiong Ng
    posted to protein motif functionppi by iris_2001 on 2008-04-29 09:14:35 as **
  • NeMoFinder: dissecting genome-wide protein-protein interactions with meso-scale network motifs
    (2006), pp. 106-115.
    by Jin Chen, Wynne Hsu, Mong L Lee, See-Kiong Ng
    posted to ppi motif denosing by iris_2001 on 2008-04-29 09:06:34 as **
  • Principles of protein-protein interactions.
    Proc Natl Acad Sci U S A, Vol. 93, No. 1. (9 January 1996), pp. 13-20.
    by S Jones, JM Thornton
    posted to principle ppi by iris_2001 on 2008-04-29 02:26:45 as ** along with 3 people bicko chad_davis Evangelia
  • Predicting protein--protein interactions from primary structure.
    Bioinformatics, Vol. 17, No. 5. (May 2001), pp. 455-460.
    by JR Bock, DA Gough
    posted to structure ppi by iris_2001 on 2008-04-28 08:23:58 as ** along with 5 people wilbur maryee leelarcombe cjeans Evangelia
  • Development of unified statistical potentials describing protein-protein interactions.
    Biophys J, Vol. 84, No. 3. (March 2003), pp. 1895-1901.
    by H Lu, L Lu, J Skolnick
    posted to structure ppi by iris_2001 on 2008-04-28 08:20:28 as ** along with 5 people wilbur mdimmic chad_davis cjeans selrac
  • Analysis of proteins and proteomes by mass spectrometry.
    Annual review of biochemistry, Vol. 70 (2001), pp. 437-473.
    by M Mann, RC Hendrickson, A Pandey
    posted to spectrometry ppi mass complex by iris_2001 on 2008-04-24 14:40:54 as **
  • A generic protein purification method for protein complex characterization and proteome exploration.
    Nat Biotechnol, Vol. 17, No. 10. (October 1999), pp. 1030-1032.
    by G Rigaut, A Shevchenko, B Rutz, M Wilm, M Mann, B Séraphin
    posted to tap ppi complex by iris_2001 on 2008-04-24 14:39:03 as ** along with 5 people Takayuki davidng helenc blaine_5 nicoleq
  • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.
    Nature, Vol. 415, No. 6868. (10 January 2002), pp. 180-183.
    by Y Ho, A Gruhler, A Heilbut, GD Bader, L Moore, SL Adams, A Millar, P Taylor, K Bennett, K Boutilier, L Yang, C Wolting, I Donaldson, S Schandorff, J Shewnarane, M Vo, J Taggart, M Goudreault, B Muskat, C Alfarano, D Dewar, Z Lin, K Michalickova, AR Willems, H Sassi, PA Nielsen, KJ Rasmussen, JR Andersen, LE Johansen, LH Hansen, H Jespersen, A Podtelejnikov, E Nielsen, J Crawford, V Poulsen, BD Sørensen, J Matthiesen, RC Hendrickson, F Gleeson, T Pawson, MF Moran, D Durocher, M Mann, CW Hogue, D Figeys, M Tyers
    posted to ppi hms-pci complex by iris_2001 on 2008-04-24 14:36:14 as ** along with 9 people and 3 groups okarsligil bicko shivaram lfriedl chad_davis lyongu gcalda raiyar helenamistry kdl Bioinformatics steinmetzlab
  • Functional organization of the yeast proteome by systematic analysis of protein complexes.
    Nature, Vol. 415, No. 6868. (10 January 2002), pp. 141-147.
    by AC Gavin, M Bösche, R Krause, P Grandi, M Marzioch, A Bauer, J Schultz, JM Rick, AM Michon, CM Cruciat, M Remor, C Höfert, M Schelder, M Brajenovic, H Ruffner, A Merino, K Klein, M Hudak, D Dickson, T Rudi, V Gnau, A Bauch, S Bastuck, B Huhse, C Leutwein, MA Heurtier, RR Copley, A Edelmann, E Querfurth, V Rybin, G Drewes, M Raida, T Bouwmeester, P Bork, B Seraphin, B Kuster, G Neubauer, G Superti-Furga
    posted to tap ppi complex by iris_2001 on 2008-04-24 14:33:34 as ** along with 16 people and 2 groups frohike csanford adiel baaden dragonrez shivaram helenc lfriedl chad_davis balajis opheliav wnpx becarmson raiyar grahamc nicoleq kdl steinmetzlab
  • Proteomics: biology in the post-genomic era. Companies all over the world rush to lead the way in the new post-genomics race.
    EMBO reports, Vol. 2, No. 7. (July 2001), pp. 558-560.
    by V Brower
    posted to proteomics by iris_2001 on 2008-04-23 07:13:38 as **
  • Prediction of protein function using protein-protein interaction data.
    J Comput Biol, Vol. 10, No. 6. (2003), pp. 947-960.
    by M Deng, K Zhang, S Mehta, T Chen, F Sun
    posted to function interaction prediction protein protein-protein by iris_2001 on 2008-04-18 09:32:48 as ** along with 2 people carlk satsumakenji
  • Iterative classification in relational data
    (2000), pp. 13-20.
    by J Neville, D Jensen
    posted to classification collective by iris_2001 on 2008-01-06 14:40:04 as **
  • Local Probabilistic Models for Link Prediction
    (2007)
    by Chao Wang, Venu Satuluri, Srinivasan Parthasarathy
    posted to link prediction by iris_2001 on 2008-01-06 14:23:58 as **
  • Link Prediction using Supervised Learning
    by Mohammad A Hasan
    posted to link prediction by iris_2001 on 2008-01-06 14:14:38 as ** along with 1 person ChaTo
  • Prediction and ranking algorithms for event-based network data
    SIGKDD Explor. Newsl., Vol. 7, No. 2. (December 2005), pp. 23-30.
    by Joshua O'Madadhain, Jon Hutchins, Padhraic Smyth
    posted to link prediction by iris_2001 on 2008-01-06 14:12:43 as ** along with 3 people eldaly bigbossman kohei-h
  • Markov logic networks
    Machine Learning, Vol. 62, No. 1-2. (February 2006), pp. 107-136.
    by Matthew Richardson, Pedro Domingos
    posted to mln srl by iris_2001 on 2008-01-06 14:08:13 as ** along with 2 people iansimon roys
  • Learning probabilistic models of link structure
    J. Mach. Learn. Res., Vol. 3 (2003), pp. 679-707.
    by Lisa Getoor, Nir Friedman, Daphne Koller, Benjamin Taskar
    posted to link prediction prm by iris_2001 on 2008-01-06 14:04:45 as ** along with 3 people lyongu wnpx student_t
  • Statistical Relational Learning for Link Prediction
    (2003)
    by Alexandrin Popescul, Lyle H Ungar
    posted to link prediction srl by iris_2001 on 2008-01-06 14:00:51 as **
  • Link Prediction Based on Graph Topology: The Predictive Value of the Generalized Clustering Coefficient
    (2006)
    by Z Huang
    posted to link prediction topology by iris_2001 on 2008-01-06 13:53:04 as ** along with 1 person kohei-h
  • A Simple Relational Classifier
    (2003)
    by S Macskassy, F Provost
    posted to classification collective by iris_2001 on 2008-01-06 13:29:40 as **
  • Discriminative Probabilistic Models for Relational Data
    (2002), pp. 485-49.
    by Ben Tasker, Abbeel Pieter, Daphne Koller
    posted to classificaiton collective object rmn by iris_2001 on 2008-01-06 13:19:04 as ** along with 1 person roys
  • Machine Learning, Proceedings of the Twentieth International Conference (ICML 2003), August 21-24, 2003, Washington, DC, USA
    (2003)
    edited by Tom Fawcett, Nina Mishra
    posted to classification classificationiterative collective link-based object by iris_2001 on 2008-01-06 13:13:40 as **
  • Link-based Classification
    (2003), pp. 496-503.
    by Qing Lu, Lise Getoor
    edited by Tom Fawcett, Nina Mishra
    posted to classification classificationiterative collective link-based object by iris_2001 on 2008-01-06 13:13:40 as **
  • Enhanced hypertext categorization using hyperlinks
    Vol. 27, No. 2. (June 1998), pp. 307-318.
    by Soumen Chakrabarti, Byron Dom, Piotr Indyk
    posted to classifciation collective labeling object relaxation by iris_2001 on 2008-01-06 13:01:31 as ** along with 4 people ssn rickl akkun_choi jgronski
  • Link prediction in relational data
    (2004)
    by B Taskar, M Wong, P Abbeel, D Koller
    posted to classification link prediction relational by iris_2001 on 2007-12-14 06:22:00 as ** along with 1 person siddharthkaza
  • Link-based Classification
    Technical Report CS-TR-4858 (February 2007)
    by Prithviraj Sen, Lise Getoor
    posted to classification collective link-based link-mining by iris_2001 on 2007-12-14 06:17:33 as **
  • Supporting Relational Knowledge Discovery: Lessons in Architecture and Algorithm Design
    (2002)
    by J Neville, D Jensen
    posted to allpurpose feature kdd learning relational relationalmodels by iris_2001 on 2007-12-14 05:59:59 as **
  • Proceedings of the Twenty-Second AAAI Conference on Artificial Intelligence, July 22-26, 2007, Vancouver, British Columbia, Canada
    (2007)
    posted to cautious classification collective inference by iris_2001 on 2007-12-14 05:47:20 as **
  • Cautious Inference in Collective Classification
    (2007), pp. 596-601.
    by Luke Mcdowell, Kalyan M Gupta, David W Aha
    posted to cautious classification collective inference by iris_2001 on 2007-12-14 05:47:20 as **
  • Why collective inference improves relational classification
    (2004)
    by D Jensen, J Neville, B Gallagher
    posted to classification collective inference relational by iris_2001 on 2007-12-14 05:28:58 as ** along with 3 people pliz scis0000001 payne
  • Leveraging relational autocorrelation with latent group models
    (2005), pp. 49-55.
    by Jennifer Neville, David Jensen
    posted to autocorrelation classification group latent modelshomophily relational by iris_2001 on 2007-12-07 02:41:53 as ** along with 3 people ldietz jeonghochang bigbossman
  • Constructing free-energy approximations and generalized belief propagation algorithms
    Information Theory, IEEE Transactions on, Vol. 51, No. 7. (2005), pp. 2282-2312.
    by JS Yedidia, WT Freeman, Y Weiss
    posted to approximations belief generalized propagationfree-energy by iris_2001 on 2007-12-04 02:08:46 as ** along with 10 people XIANG A_Olympia apaydin pcarbo awllee rsantana flavian_vasile john_ardelius hannu daniel51
  • The link-prediction problem for social networks
    Journal of the American Society for Information Science and Technology, Vol. 58, No. 7. (2007), pp. 1019-1031.
    by David Liben-Nowell, Jon Kleinberg
    posted to link-prediction networks social by iris_2001 on 2007-12-03 01:40:42 as ** along with 11 people and 2 groups lfriedl tnhh rrbarb haveuheard elsantosneto ldietz merazzle RafG cursonivel1 theus amirmz cursonivel1 Social Web
  • Classification in Networked Data: A Toolkit and a Univariate Case Study
    J. Mach. Learn. Res., Vol. 8 (2007), pp. 935-983.
    by Sofus A Macskassy, Foster Provost
    posted to classification collective by iris_2001 on 2007-11-30 01:09:35 as **
  • Combining Collective Classification and Link Prediction
    (2007)
    by Mustafa Bilgic, Galileo M Namata, Lise Getoor
    posted to classification collective link prediction by iris_2001 on 2007-11-29 14:01:17 as **
  • Global protein function prediction from protein-protein interaction networks.
    Nat Biotechnol, Vol. 21, No. 6. (June 2003), pp. 697-700.
    by A Vazquez, A Flammini, A Maritan, A Vespignani
    posted to function network ppi prediction protein by iris_2001 on 2007-11-29 06:57:30 as ** along with 6 people carlk shivaram eweaver gcalda grahamc maralena
  • Graph Sharpening plus Graph Integration: A Synergy that Improves Protein Functional Classification
    Bioinformatics (2007)
    by Hyunjung Shin, Andreas M Lisewski, Olivier Lichtarge
    posted to classification function graph integration protein sharpeninggraph by iris_2001 on 2007-11-01 05:05:49 as **
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