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	Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 290. by Marcio Acencio, Ney Lemke posted to topology of network genes featuresprediction essential by iris_2001 on 2009-09-17 08:19:09 as along with 6 people icecrown richardbickerton zchen kshameer thegoose reyez
	Gene network interconnectedness and the generalized topological overlap measure [My Copy] BMC Bioinformatics, Vol. 8 (2007) by Andy Yip, Steve Horvath posted to gene interconnectednesstopological measure network overlap thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 16. (2004) by Yeger E. Lotem, S. Sattath, N. Kashtan, et al.S. Itzkovitz, R. Milo, R. Y. Pinter, U. Alon, H. Margalit posted to genetics interaction motifs network network_motif networks p2p protein-protein regulation regulatory sysbio thesis-import-09-01-04 transcription yeast by iris_2001 on 2009-01-04 10:36:55 as
	Supervised enzyme network inference from the integration of genomic data and chemical information [My Copy] Bioinformatics, Vol. 21 Suppl 1 (2005) by Y. Yamanishi, J. P. Vert, M. Kanehisa posted to data fusion inference network supervised thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Protein network inference from multiple genomic data: a supervised approach [My Copy] Bioinformatics, Vol. 20 Suppl 1 (2004) by Y. Yamanishi, J. P. Vert, M. Kanehisa posted to approach inferencesupervised network protein thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Discovering disease genes by topological features in human protein-protein interaction network [My Copy] Bioinformatics (2006) by Jianzhen Xu, Yongjin Li posted to network ppi thesis-import-09-01-04 topologysignature by iris_2001 on 2009-01-04 10:36:55 as
	Topology and weights in a protein domain interaction network--a novel way to predict protein interactions [My Copy] BMC Genomics, Vol. 7 (2006) by S. Wuchty posted to domain interaction network ppitopology thesis-import-09-01-04 weightsprotein by iris_2001 on 2009-01-04 10:36:55 as
	An Efficient Approach to Detect a Protein Community from a Seed [My Copy] In Computational Intelligence in Bioinformatics and Computational Biology, 2005. CIBCB '05. Proceedings of the 2005 IEEE Symposium on (2005), pp. 1-7. by D. D. Wu, Xiaohua Hu posted to community network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Collective dynamics of 'small-world' networks [My Copy] Nature, Vol. 393, No. 6684. (1998), pp. 440-442. by D. J. Watts, S. H. Strogatz posted to network ppi small-world thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	How the global structure of protein interaction networks evolves [My Copy] Proc Biol Sci, Vol. 270, No. 1514. (2003), pp. 457-466. by A. Wagner posted to evolution global network ppi structure thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Global protein function prediction from protein-protein interaction networks [My Copy] Nat Biotechnol, Vol. 21, No. 6. (2003), pp. 697-700. by A. Vazquez, A. Flammini, A. Maritan, A. Vespignani posted to function network ppi prediction protein thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Modeling of protein interaction networks [My Copy] (2001) by A. Vazquez, A. Flammini, A. Maritan, A. Vespignani posted to modelling network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	From protein networks to biological systems [My Copy] FEBS Lett, Vol. 579, No. 8. (2005), pp. 1821-1827. by P. Uetz, R. L. Finley posted to network review thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:53 as
	Network topology generators: degree-based vs. structural [My Copy] In SIGCOMM '02: Proceedings of the 2002 conference on Applications, technologies, architectures, and protocols for computer communications (2002), pp. 147-159. by Hongsuda Tangmunarunkit, Ramesh Govindan, Sugih Jamin, Scott Shenker, Walter Willinger posted to degree-basedstructural generator network thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:53 as
	A direct comparison of protein interaction confidence assignment schemes [My Copy] BMC Bioinformatics, Vol. 7 (2006) by Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker posted to comparative confidence interaction network ppi study thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:53 as
	Subnets of scale-free networks are not scale-free: sampling properties of networks [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 12. (2005), pp. 4221-4224. by M. P. Stumpf, C. Wiuf, R. M. May posted to network sampling scale-free thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:53 as
	Network motifs in the transcriptional regulation network of Escherichia coli [My Copy] Nat Genet, Vol. 31, No. 1. (2002) by Shai S. Orr, Ron Milo, Shmoolik Mangan, Uri Alon posted to dense_overlapping_regulon e_coli ecoli feedforward motifs network network_motifs networks regulation systems_approach thesis-import-09-01-04 transcription by iris_2001 on 2009-01-04 10:36:52 as
	Network-based prediction of protein function [My Copy] Mol Syst Biol, Vol. 3 (2007) by Roded Sharan, Igor Ulitsky, Ron Shamir posted to function network ppi prediction protein review thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:51 as
	From the Cover: Conserved patterns of protein interaction in multiple species [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 6. (2005), pp. 1974-1979. by R. Sharan, S. Suthram, R. M. Kelley, et al.T. Kuhn, S. Mccuine, P. Uetz, T. Sittler, R. M. Karp, T. Ideker posted to complex conserved motif network pathway pattern ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:51 as
	Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data [My Copy] In RECOMB '04: Proceedings of the eighth annual international conference on Computational molecular biology (2004), pp. 282-289. by Roded Sharan, Trey Ideker, Brian Kelley, Ron Shamir, Richard Karp posted to complex network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:51 as
	Efficient algorithms for detecting signaling pathways in protein interaction networks [My Copy] J Comput Biol, Vol. 13, No. 2. (2006), pp. 133-144. by J. Scott, T. Ideker, R. M. Karp, R. Sharan posted to network pathways ppi signaling thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:51 as
	Exploring Biological Network Structure Using Exponential Random Graph Models [My Copy] Bioinformatics (2007) by Zachary M. Saul, Vladimir Filkov posted to biological exponential graph model network random structure thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:51 as
	Interaction generality, a measurement to assess the reliability of a protein-protein interaction [My Copy] Nucl. Acids Res., Vol. 30, No. 5. (2002), pp. 1163-1168. by Rintaro Saito, Harukazu Suzuki, Yoshihide Hayashizaki posted to ig network ppi thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:51 as
	Hierarchical Organization of Modularity in Metabolic Networks [My Copy] Science, Vol. 297, No. 5586. (2002), pp. 1551-1555. by E. Ravasz, A. L. Somera, D. A. Mongru, Z. N. Oltvai, A. L. Barabasi posted to modularity network ppi thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:50 as
	Modelling protein-protein interaction networks via a stickiness index [My Copy] J R Soc Interface, Vol. 3, No. 10. (2006), pp. 711-716. by N. Przulj, D. J. Higham posted to evolution index modelling network ppi stickiness thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:49 as
	A Topological Measurement for Weighted Protein Interaction Network [My Copy] In CSB '05: Proceedings of the 2005 IEEE Computational Systems Bioinformatics Conference (CSB'05) (2005), pp. 268-278. by Pengjun Pei, Aidong Zhang posted to network ppi thesis-import-09-01-04 topologyweighted by iris_2001 on 2009-01-04 10:36:49 as
	Detecting community structure in networks [My Copy] The European Physical Journal B - Condensed Matter, Vol. 38, No. 2. (2004), pp. 321-330. by M. E. Newman posted to community network structure thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:48 as
	Context-sensitive data integration and prediction of biological networks [My Copy] Bioinformatics, Vol. 23, No. 17. (2007), pp. 2322-2330. by Chad Myers, Olga Troyanskaya posted to context-sensititive data integration network prediction thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:48 as
	Network Synchronization, Diffusion, and the Paradox of Heterogeneity [My Copy] (2005) by Adilson Motter, Changsong Zhou, Juergen Kurths posted to diffusion heterogeneity network of paradox synchronization the thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:48 as
	Denoising and untangling graphs using degree priors [My Copy] In Advances in neural information processing systems 16 (2003) by Q. D. Morris, B. J. Frey, C. J. Paige posted to degree denoising graphs network noisy thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:47 as
	Network motifs: simple building blocks of complex networks [My Copy] Science, Vol. 298, No. 5594. (2002), pp. 824-827. by R. Milo, Shen S. Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted to motifs network thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:47 as
	Inferring network mechanisms: the Drosophila melanogaster protein interaction network [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 9. (2005), pp. 3192-3197. by M. Middendorf, E. Ziv, C. H. Wiggins posted to learning machine model network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:47 as
	Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns [My Copy] Proc Natl Acad Sci U S A (2006) by Timothy R. Lezon, Jayanth R. Banavar, Marek Cieplak, Amos Maritan, Nina V. Fedoroff posted to entropy genetic interaction maximization network thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:45 as
	Predicting protein function from protein/protein interaction data: a probabilistic approach [My Copy] Bioinformatics, Vol. 19 Suppl 1 (2003) by S. Letovsky, S. Kasif posted to function mrf network ppi prediction protein thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:45 as
	Systematic interpretation of genetic interactions using protein networks [My Copy] Nature Biotechnology, Vol. 23, No. 5. (2005) by Ryan Kelley, Trey Ideker posted to biological_networks gene genetic-inter genetics genettic-interactions metabolic metabolism network networks p2p protein proteininteractions synthetic-lethal systems-biology systems_biology thesis-import-09-01-04 yeast by iris_2001 on 2009-01-04 10:36:44 as
	A new status index derived from sociometric analysis [My Copy] Psychometrika, Vol. 18, No. 1. (1953), pp. 39-43. by Leo Katz posted to katz network thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:44 as
	Topological Generalizations of network motifs [My Copy] (2004) by N. Kashtan, S. Itzkovitz, R. Milo, U. Alon posted to motifs network thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:44 as
	High-betweenness proteins in the yeast protein interaction network [My Copy] J Biomed Biotechnol, Vol. 2005, No. 2. (2005), pp. 96-103. by M. P. Joy, A. Brock, D. E. Ingber, S. Huang posted to betweenness network ppi thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:44 as
	Lethality and centrality in protein networks [My Copy] Nature, Vol. 411, No. 6833. (2001), pp. 41-42. by H. Jeong, S. P. Mason, A. L. Barabasi, Z. N. Oltvai posted to network ppi thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:44 as
	Towards an integrated protein-protein interaction network: a relational markov network approach [My Copy] J Comput Biol, Vol. 13, No. 2. (2006), pp. 145-164. by A. Jaimovich, G. Elidan, H. Margalit, N. Friedman posted to data fusion markov network relational thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:43 as
	Subgraphs and network motifs in geometric networks [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 71, No. 2 Pt 2. (2005) by S. Itzkovitz, U. Alon posted to motifsgeometric network networks subgraphs thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:43 as
	Probabilistic inference of molecular networks from noisy data sources [My Copy] Bioinformatics, Vol. 20, No. 8. (2004), pp. 1205-1213. by Ivan Iossifov, Michael Krauthammer, Carol Friedman, et al.Vasileios Hatzivassiloglou, Joel Bader, Kevin White, Andrey Rzhetsky posted to network noisy ppi thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:43 as
	Algorithm Engineering for Color-Coding to Facilitate Signaling Pathway Detection [My Copy] In Proceedings of the 5th Asia-Pacific Bioinformatics Conference (APBC~'07), Vol. 5 (2007) by Falk Huffner, Sebastian Wernicke, Thomas Zichner posted to color-coding detection network pathway ppi signaling thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:43 as
	Identification of conserved protein complexes based on a model of protein network evolution [My Copy] Bioinformatics, Vol. 23, No. 2. (2007) by E. Hirsh, R. Sharan posted to complex conserved evolution network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:42 as
	Evidence for dynamically organized modularity in the yeast protein-protein interaction network [My Copy] Nature, Vol. 430, No. 6995. (2004), pp. 88-93. by Jing D. Han, Nicolas Bertin, Tong Hao, et al.Debra Goldberg, Gabriel Berriz, Lan Zhang, Denis Dupuy, Albertha Walhout, Michael Cusick, Frederick Roth, Marc Vidal posted to modularity network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:41 as
	Probabilistic prediction of unknown metabolic and signal-transduction networks [My Copy] Genetics, Vol. 159, No. 3. (2001), pp. 1291-1298. by S. M. Gomez, S. H. Lo, A. Rzhetsky posted to metabolic network prediction probabilistic singal-transduction thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:41 as
	Towards the prediction of complete protein--protein interaction networks [My Copy] (2002) by S. Gomez, A. Rzhetsky posted to model network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:41 as
	Assessing experimentally derived interactions in a small world [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 8. (2003), pp. 4372-4376. by D. S. Goldberg, F. P. Roth posted to clustering coefficient network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:41 as
	Leveraging Label-Independent Features for Classification in Sparsely Labeled Networks: An Empirical Study [My Copy] In Proceedings of the Second ACM SIGKDD Workshop on Social Network Mining and Analysis (SNA-KDD'08) (2008) by B. Gallagher, Eliassi T. Rad posted to classification construction feature network relational thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:40 as
	From The Cover: A simple physical model for scaling in protein-protein interaction networks [My Copy] PNAS, Vol. 103, No. 2. (2006), pp. 311-316. by Eric Deeds, Orr Ashenberg, Eugene Shakhnovich posted to model network physical ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:39 as

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multiple	2

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