iris_2001's ppi [153 articles] Export

Recent papers added to iris_2001's library classified by the tag ppi. You can also see everyone's ppi.

	Assessing the druggability of protein-protein interactions by a supervised machine-learning method [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (25 August 2009), 263. by Nobuyoshi Sugaya, Kazuyoshi Ikeda posted to ppi druggability by iris_2001 on 2009-09-17 08:25:52 as along with 3 people richardbickerton higueruelo phoenixzxl
	Computational prediction of protein-protein interactions. [My Copy] Molecular biotechnology, Vol. 38, No. 1. (20 January 2008), pp. 1-17. by Lucy Skrabanek, Harpreet K. Saini, Gary D. Bader, Anton J. Enright posted to review ppi by iris_2001 on 2009-09-14 07:59:35 as along with 7 people jperkins kgutwin kiekyon jwhitney ruvido guhjy penpen926
	Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network [My Copy] J Biol, Vol. 4, No. 2. (2005) by L. V. Zhang, O. D. King, S. L. Wong, et al.D. S. Goldberg, A. H. Tong, G. Lesage, B. Andrews, H. Bussey, C. Boone, F. P. Roth posted to motifs ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Computational Approaches for Predicting Protein---Protein Interactions: A Survey [My Copy] J. Med. Syst., Vol. 30, No. 1. (2006), pp. 39-44. by Jingkai Yu, Farshad Fotouhi posted to ppi review thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:55 as
	Discovering disease genes by topological features in human protein-protein interaction network [My Copy] Bioinformatics (2006) by Jianzhen Xu, Yongjin Li posted to network ppi thesis-import-09-01-04 topologysignature by iris_2001 on 2009-01-04 10:36:55 as
	An Efficient Approach to Detect a Protein Community from a Seed [My Copy] In Computational Intelligence in Bioinformatics and Computational Biology, 2005. CIBCB '05. Proceedings of the 2005 IEEE Symposium on (2005), pp. 1-7. by D. D. Wu, Xiaohua Hu posted to community network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Collective dynamics of 'small-world' networks [My Copy] Nature, Vol. 393, No. 6684. (1998), pp. 440-442. by D. J. Watts, S. H. Strogatz posted to network ppi small-world thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	How the global structure of protein interaction networks evolves [My Copy] Proc Biol Sci, Vol. 270, No. 1514. (2003), pp. 457-466. by A. Wagner posted to evolution global network ppi structure thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Comparative assessment of large-scale data sets of protein-protein interactions [My Copy] Nature, Vol. 417, No. 6887. (2002), pp. 399-403. by C. von Mering, R. Krause, B. Snel, et al.M. Cornell, S. G. Oliver, S. Fields, P. Bork posted to assessment ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	STRING: known and predicted protein-protein associations, integrated and transferred across organisms [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (2005) by C. von Mering, L. J. Jensen, B. Snel, et al.S. D. Hooper, M. Krupp, M. Foglierini, N. Jouffre, M. A. Huynen, P. Bork posted to associations integrated ppi string thesis-import-09-01-04 transferred by iris_2001 on 2009-01-04 10:36:54 as
	Global protein function prediction from protein-protein interaction networks [My Copy] Nat Biotechnol, Vol. 21, No. 6. (2003), pp. 697-700. by A. Vazquez, A. Flammini, A. Maritan, A. Vespignani posted to function network ppi prediction protein thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	Modeling of protein interaction networks [My Copy] (2001) by A. Vazquez, A. Flammini, A. Maritan, A. Vespignani posted to modelling network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:54 as
	A direct comparison of protein interaction confidence assignment schemes [My Copy] BMC Bioinformatics, Vol. 7 (2006) by Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker posted to comparative confidence interaction network ppi study thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:53 as
	InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes [My Copy] BMC Bioinformatics, Vol. 8 (2007) by Jingchun Sun, Yan Sun, Guohui Ding, et al.Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao posted to evaluation integration ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:53 as
	Physical protein-protein interactions predicted from microarrays [My Copy] Bioinformatics (2008) by Ta T. Soong, Kazimierz Wrzeszczynski, Burkhard Rost posted to learning machine microarrays ppi prediction thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:52 as
	Network-based prediction of protein function [My Copy] Mol Syst Biol, Vol. 3 (2007) by Roded Sharan, Igor Ulitsky, Ron Shamir posted to function network ppi prediction protein review thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:51 as
	From the Cover: Conserved patterns of protein interaction in multiple species [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 6. (2005), pp. 1974-1979. by R. Sharan, S. Suthram, R. M. Kelley, et al.T. Kuhn, S. Mccuine, P. Uetz, T. Sittler, R. M. Karp, T. Ideker posted to complex conserved motif network pathway pattern ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:51 as
	Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data [My Copy] In RECOMB '04: Proceedings of the eighth annual international conference on Computational molecular biology (2004), pp. 282-289. by Roded Sharan, Trey Ideker, Brian Kelley, Ron Shamir, Richard Karp posted to complex network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:51 as
	Efficient algorithms for detecting signaling pathways in protein interaction networks [My Copy] J Comput Biol, Vol. 13, No. 2. (2006), pp. 133-144. by J. Scott, T. Ideker, R. M. Karp, R. Sharan posted to network pathways ppi signaling thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:51 as
	Negation of protein protein interactions: analysis and extraction [My Copy] Bioinformatics, Vol. 23, No. 13. (2007), pp. i424-432. by Olivia S. Graillet, Massimo Poesio posted to data mining negation ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:51 as
	Interaction generality, a measurement to assess the reliability of a protein-protein interaction [My Copy] Nucl. Acids Res., Vol. 30, No. 5. (2002), pp. 1163-1168. by Rintaro Saito, Harukazu Suzuki, Yoshihide Hayashizaki posted to ig network ppi thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:51 as
	A generic protein purification method for protein complex characterization and proteome exploration [My Copy] Nat Biotechnol, Vol. 17, No. 10. (1999), pp. 1030-1032. by G. Rigaut, A. Shevchenko, B. Rutz, M. Wilm, M. Mann, B. Sã©raphin posted to complex ppi tap thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:50 as
	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae [My Copy] Journal of Biology, Vol. 5, No. 4. (2006) by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, et al.Bobby J. Breitkreutz, Gary Hon, Chad Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga Troyanskya, Trey Ideker, Kara Dolinski, Nizar Batada, Mike Tyers posted to global interaction ppi thesis-import-09-01-04 yeast by iris_2001 on 2009-01-04 10:36:50 as
	Hierarchical Organization of Modularity in Metabolic Networks [My Copy] Science, Vol. 297, No. 5586. (2002), pp. 1551-1555. by E. Ravasz, A. L. Somera, D. A. Mongru, Z. N. Oltvai, A. L. Barabasi posted to modularity network ppi thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:50 as
	A mixture of feature experts approach for protein-protein interaction prediction [My Copy] BMC Bioinformatics, Vol. 8 Suppl 10 (2007) by Y. Qi, Klein J. Seetharaman, Bar Z. Joseph posted to logistic ppi prediction regression thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:50 as
	Modelling protein-protein interaction networks via a stickiness index [My Copy] J R Soc Interface, Vol. 3, No. 10. (2006), pp. 711-716. by N. Przulj, D. J. Higham posted to evolution index modelling network ppi stickiness thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:49 as
	A Topological Measurement for Weighted Protein Interaction Network [My Copy] In CSB '05: Proceedings of the 2005 IEEE Computational Systems Bioinformatics Conference (CSB'05) (2005), pp. 268-278. by Pengjun Pei, Aidong Zhang posted to network ppi thesis-import-09-01-04 topologyweighted by iris_2001 on 2009-01-04 10:36:49 as
	Filtering high-throughput protein-protein interaction data using a combination of genomic features [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by A. Patil, H. Nakamura posted to bayesian bio dataintegration interaction ppi protein thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:49 as
	Statistical analysis of domains in interacting protein pairs [My Copy] Bioinformatics, Vol. 21, No. 7. (2005), pp. 993-1001. by M. W. Nye, Berzuini Carlo, R. Gilks, Babu Madan, A. Teichmann posted to analysis domains of ppi statistical thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:49 as
	A lock-and-key model for protein-protein interactions [My Copy] Bioinformatics, Vol. 22, No. 16. (2006), pp. 2012-2019. by Julie Morrison, Rainer Breitling, Desmond Higham, David Gilbert posted to lock-and-key modelling ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:47 as
	Inferring network mechanisms: the Drosophila melanogaster protein interaction network [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 9. (2005), pp. 3192-3197. by M. Middendorf, E. Ziv, C. H. Wiggins posted to learning machine model network ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:47 as
	Specificity and Stability in Topology of Protein Networks [My Copy] Science, Vol. 296, No. 5569. (2002), pp. 910-913. by Sergei Maslov, Kim Sneppen posted to disassortative ppi thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:47 as
	Growing functional modules from a seed protein via integration of protein interaction and gene expression data [My Copy] BMC Bioinformatics, Vol. 8 (2007) by Ioannis Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted to clustering data expression functional gene integration module ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:47 as
	Analysis of proteins and proteomes by mass spectrometry [My Copy] Annual review of biochemistry, Vol. 70 (2001), pp. 437-473. by M. Mann, R. C. Hendrickson, A. Pandey posted to complex mass ppi spectrometry thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:47 as
	Mining new protein-protein interactions [My Copy] Engineering in Medicine and Biology Magazine, IEEE, Vol. 24, No. 3. (2005), pp. 103-108. by H. Mamitsuka posted to function hierarchical latent-variable model ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:47 as
	False positive reduction in protein-protein interaction predictions using gene ontology annotations [My Copy] BMC Bioinformatics, Vol. 8 (2007) by Mahmoud Mahdavi, Yen H. Lin posted to fp gene ontology ppi reduction thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:46 as
	Assessing the limits of genomic data integration for predicting protein networks [My Copy] Genome Res, Vol. 15, No. 7. (2005), pp. 945-953. by L. J. Lu, Y. Xia, A. Paccanaro, H. Yu, M. Gerstein posted to data feature multiple ppi prediction source thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:46 as
	Development of unified statistical potentials describing protein-protein interactions [My Copy] Biophys J, Vol. 84, No. 3. (2003), pp. 1895-1901. by H. Lu, L. Lu, J. Skolnick posted to ppi structure thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:46 as
	Inferring protein-protein interactions through high-throughput interaction data from diverse organisms [My Copy] Bioinformatics, Vol. 21, No. 15. (2005), pp. 3279-3285. by Y. Liu, N. Liu, H. Zhao posted to diverse ht organisms ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:46 as
	Information assessment on predicting protein-protein interactions [My Copy] BMC Bioinformatics, Vol. 5 (2004) by N. Lin, B. Wu, R. Jansen, M. Gerstein, H. Zhao posted to assessment information ppi prediction thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:46 as
	Predicting protein function from protein/protein interaction data: a probabilistic approach [My Copy] Bioinformatics, Vol. 19 Suppl 1 (2003) by S. Letovsky, S. Kasif posted to function mrf network ppi prediction protein thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:45 as
	An integrated approach to the prediction of domain-domain interactions [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006) by Hyunju Lee, Minghua Deng, Fengzhu Sun, Ting Chen posted to data domain fusion ppi prediction thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:45 as
	Assessing and Combining Reliability of Protein Interaction Sources [My Copy] In Pacific Symposium on Biocomputing, Vol. 12 (2007), pp. 433-444. by S. Leach, A. Gabow, L. Hunter, D. S. Goldberg posted to assess combine noisyor ppi reliability thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:45 as
	High-betweenness proteins in the yeast protein interaction network [My Copy] J Biomed Biotechnol, Vol. 2005, No. 2. (2005), pp. 96-103. by M. P. Joy, A. Brock, D. E. Ingber, S. Huang posted to betweenness network ppi thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:44 as
	Principles of protein-protein interactions [My Copy] Proc Natl Acad Sci U S A, Vol. 93, No. 1. (1996), pp. 13-20. by S. Jones, J. M. Thornton posted to ppi principle thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:44 as
	Lethality and centrality in protein networks [My Copy] Nature, Vol. 411, No. 6833. (2001), pp. 41-42. by H. Jeong, S. P. Mason, A. L. Barabasi, Z. N. Oltvai posted to network ppi thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:44 as
	Relating whole-genome expression data with protein-protein interactions [My Copy] Genome Res, Vol. 12, No. 1. (2002), pp. 37-46. by R. Jansen, D. Greenbaum, M. Gerstein posted to expression gene intersection ppi thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:43 as
	Message-Passing Algorithms for the Prediction of Protein Domain Interactions from Protein-Protein Interaction Data [My Copy] Bioinformatics (2008) by Mudassar Iqbal, Alex Freitas, Colin Johnson, Massimo Vergassola posted to belief ddi ppi propagation thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:43 as
	Probabilistic inference of molecular networks from noisy data sources [My Copy] Bioinformatics, Vol. 20, No. 8. (2004), pp. 1205-1213. by Ivan Iossifov, Michael Krauthammer, Carol Friedman, et al.Vasileios Hatzivassiloglou, Joel Bader, Kevin White, Andrey Rzhetsky posted to network noisy ppi thesis-import-09-01-04 topology by iris_2001 on 2009-01-04 10:36:43 as
	Algorithm Engineering for Color-Coding to Facilitate Signaling Pathway Detection [My Copy] In Proceedings of the 5th Asia-Pacific Bioinformatics Conference (APBC~'07), Vol. 5 (2007) by Falk Huffner, Sebastian Wernicke, Thomas Zichner posted to color-coding detection network pathway ppi signaling thesis-import-09-01-04 by iris_2001 on 2009-01-04 10:36:43 as

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thesis-import-09-01-04	407
ppi	153
network	124
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gene	67
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ig	2
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ht	2
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katz	2
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roc	2
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modeling	2
diverse	2
intersection	2
weightsprotein	2
lock-and-key	2
adult	2
ppitopology	2
damage	2
multiple	2

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