isimpson's motifs [15 articles] Export Sort

Recent papers added to isimpson's library classified by the tag motifs. You can also see everyone's motifs.

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	Motif-Blind, Genome-Wide Discovery of cis-Regulatory Modules in Drosophila and Mouse [My Copy] Vol. 17, No. 4. (20 October 2009), pp. 568-579. by Miriam R. Kantorovitz, Majid Kazemian, Sarah Kinston, et al.Diego Miranda-Saavedra, Qiyun Zhu, Gene E. Robinson, Berthold Göttgens, Marc S. Halfon, Saurabh Sinha posted to tools tfbs prediction motifs motif-discovery algorithm by isimpson on 2009-10-27 14:16:21 as along with 1 person and 1 group daveGerrard BergmanLab
	Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics [My Copy] PLoS Comput Biol, Vol. 4, No. 3. (21 March 2008), e1000021. by Stephen A. Ramsey, Sandy L. Klemm, Daniel E. Zak, et al.Kathleen A. Kennedy, Vesteinn Thorsson, Bin Li, Mark Gilchrist, Elizabeth S. Gold, Carrie D. Johnson, Vladimir Litvak, Garnet Navarro, Jared C. Roach, Carrie M. Rosenberger, Alistair G. Rust, Natalya Yudkovsky, Alan Aderem, Ilya Shmulevich posted to tfbs must-read motifs motif-discovery bayesian by isimpson on 2009-08-26 16:53:14 as along with 3 people and 1 group nicholasflann talponer ptrobajo Jarman Lab
	A data integration framework for prediction of transcription factor targets. [My Copy] Annals of the New York Academy of Sciences, Vol. 1158 (March 2009), pp. 205-214. by Matti Nykter, Harri Lähdesmäki, Alistair Rust, Vesteinn Thorsson, Ilya Shmulevich posted to wtg09 tfbs must-read motifs motif-discovery bayesian by isimpson on 2009-08-26 16:53:14 as along with 1 group Jarman Lab
	Probabilistic Inference of Transcription Factor Binding from Multiple Data Sources [My Copy] PLoS ONE, Vol. 3, No. 3. (26 March 2008), e1820. by Harri Lähdesmäki, Alistair G. Rust, Ilya Shmulevich posted to wtg09 tfbs software must-read motifs motif-discovery bayesian by isimpson on 2009-08-26 16:49:30 as along with 4 people and 1 group nklee dolchan druvus guhjy Jarman Lab
	Genomic characterization of a repetitive motif strongly associated with developmental genes in Drosophila. [My Copy] BMC genomics, Vol. 4, No. 1. (16 December 2003) by Javier Costas, Cristina P. Vieira, Fernando Casares, Jorge Vieira posted to transcription-regulation motifs drosophila development by isimpson on 2009-08-21 09:44:03 as along with 1 person operon
	Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes [My Copy] Nucl. Acids Res. In Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W247-252. by Federico Zambelli, Graziano Pesole, Giulio Pavesi posted to motif-discovery motifs prediction software tfbs transcription-factor by isimpson on 2009-06-04 12:11:40 as along with 6 people bsamal druvus natstreet idonaldson nklee nuin
	Parsing regulatory DNA: General tasks,techniques,and the PhyloGibbs approach. [My Copy] J Biosci, Vol. 32, No. 5. (August 2007), pp. 863-870. by R. Siddharthan posted to motif-discovery motifs by isimpson on 2009-03-28 21:26:36 as along with 3 people lusk druvus maximilianh
	A survey of DNA motif finding algorithms. [My Copy] BMC bioinformatics, Vol. 8 Suppl 7, No. Suppl 7. (2007) by Modan K. Das, Ho-Kwok K. Dai posted to motif-discovery motifs review by isimpson on 2009-03-28 21:24:16 as along with 18 people and 2 groups bsamal Dulce lusk wowalz svenrahmann daveGerrard coldmeadow druvus Stew emptyhb dquest nklee maximilianh yevishere csdhwang brant xili03 pradiptaray BergmanLab Bioinformatics - CRUK
	Cluster-Buster: finding dense clusters of motifs in DNA sequences [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3666-3668. by Martin C. Frith, Michael C. Li, Zhiping Weng posted to cis-regulatory-element clustering heuristic motif-discovery motifs by isimpson on 2009-03-03 02:27:39 as along with 3 people and 1 group Dulce nklee indigoviolet EisenLab
	CisModule: De novo discovery of cis-regulatory modules by hierarchical mixture modeling [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 33. (17 August 2004), pp. 12114-12119. by Qing Zhou, Wing H. Wong posted to database motif-discovery motifs must-read transcription-regulation by isimpson on 2008-10-09 10:52:02 as along with 4 people and 1 group tonamswish indigoviolet dpollard ep161302 EisenLab
	Homotypic regulatory clusters in Drosophila. [My Copy] Genome Res, Vol. 13, No. 4. (April 2003), pp. 579-588. by A. P. Lifanov, V. J. Makeev, A. G. Nazina, D. A. Papatsenko posted to database motif-discovery motifs must-read transcription-regulation by isimpson on 2008-10-09 10:51:42 as along with 3 people and 1 group maximilianh indigoviolet tresch EisenLab
	Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo. [My Copy] BMC Bioinformatics, Vol. 3 (24 October 2002) by N. Rajewsky, M. Vergassola, U. Gaul, E. D. Siggia posted to database motif-discovery motifs must-read transcription-regulation by isimpson on 2008-10-09 10:51:16 as along with 8 people and 2 groups daveGerrard maximilianh ansobol indigoviolet adepace koller Stew csdhwang BergmanLab EisenLab
	Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model. [My Copy] Genome Res, Vol. 12, No. 7. (July 2002), pp. 1019-1028. by M. S. Halfon, Y. Grad, G. M. Church, A. M. Michelson posted to database motif-discovery motifs must-read transcription-regulation by isimpson on 2008-10-09 10:50:50 as along with 2 people maximilianh_otx maximilianh
	DNA binding sites: representation and discovery. [My Copy] Bioinformatics (Oxford, England), Vol. 16, No. 1. (January 2000), pp. 16-23. by G. D. Stormo posted to transcription-regulation review motifs motif-discovery by isimpson on 2008-09-01 16:41:35 as along with 9 people and 1 group yylin Stew emptyhb kaarsinogen mbj dquest lusk ezralanglois xili03 Bioinformatics - CRUK
	Computational identification of transcriptional regulatory elements in DNA sequence. [My Copy] Nucleic acids research, Vol. 34, No. 12. (19 July 2006), pp. 3585-3598. by Debraj GuhaThakurta posted to motif-discovery motifs must-read review transcription-regulation by isimpson on 2008-09-01 16:35:53 as along with 12 people and 1 group maximilianh hagechouchin443 aprasad tmmurali jfr johncumbers reidy giovanni cabbagezs ankur_iitg vietanh0 xili03 GeschwindLab

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isimpson's motifs [15 articles] Export Sort

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