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	Spectra of random graphs with given expected degrees. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 11. (27 May 2003), pp. 6313-6318. by F. Chung, L. Lu, V. Vu posted to graph spectral by j3xucite on 2006-10-06 21:56:36 as along with 3 people and 1 group jobriath camster bigbossman dbk-lab
	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by Wolfgang Kabsch, Christian Sander posted to no-tag by j3xucite on 2009-10-21 17:26:46 as along with 32 people barmak7282 Vadikus scampos TLVincent maria_hauser pablocarb rpetrenko carlosjavierna mijam wqia007 dsmueller niallhaslam saunders jwm sebk Diego_Prada pjcite kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	A Probabilistic Graphical Model for Ab Initio Folding [My Copy] In RECOMB 2'09: Proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology (2009), pp. 59-73. by Feng Zhao, Jian Peng, Joe Debartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu posted to no-tag by j3xucite on 2009-10-21 04:04:58 as
	MUFOLD: A new solution for protein 3D structure prediction [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 999A. (2009), NA. by Jingfen Zhang, Qingguo Wang, Bogdan Barz, et al.Zhiquan He, Ioan Kosztin, Yi Shang, Dong Xu posted to no-tag by j3xucite on 2009-10-17 17:25:08 as along with 1 person babakap
	I-TASSER: Fully automated protein structure prediction in CASP8 [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 77, No. S9. (21 August 2009), pp. 100-113. by Yang Zhang posted to no-tag by j3xucite on 2009-10-17 17:10:15 as along with 3 people and 1 group AliC maria_hauser reyez Orengo Group Journal Picks
	Structure prediction for CASP8 with all-atom refinement using Rosetta [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 77, No. S9. (20 July 2009), pp. 89-99. by Srivatsan Raman, Robert Vernon, James Thompson, et al.Michael Tyka, Ruslan Sadreyev, Jimin Pei, David Kim, Elizabeth Kellogg, Frank DiMaio, Oliver Lange, Lisa Kinch, Will Sheffler, Bong-Hyun Kim, Rhiju Das, Nick V. Grishin, David Baker posted to no-tag by j3xucite on 2009-10-17 17:02:21 as along with 2 people and 1 group AliC timhubbard Orengo Group Journal Picks
	Analysis of CASP8 targets, predictions and assessment methods [My Copy] Database, Vol. 2009, No. 0. (28 April 2009), bap003. by Shuoyong Shi, Jimin Pei, Ruslan I. Sadreyev, et al.Lisa N. Kinch, Indraneel Majumdar, Jing Tong, Hua Cheng, Bong-Hyun Kim, Nick V. Grishin posted to casp8 by j3xucite on 2009-08-11 18:12:34 as
	Prediction of global and local quality of CASP8 models by MULTICOM series [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Jianlin Cheng, Zheng Wang, Allison N. Tegge, Jesse Eickholt posted to qualityassessment by j3xucite on 2009-07-13 04:22:13 as
	Prediction of global and local model quality in CASP8 using the ModFOLD server [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Liam J. Mcguffin posted to qualityassessment by j3xucite on 2009-07-13 04:15:02 as
	QMEANclust: estimation of protein model quality by combining a composite scoring function with structural density information [My Copy] BMC Structural Biology, Vol. 9, No. 1. (20 May 2009), 35. by Pascal Benkert, Torsten Schwede, Silvio Tosatto posted to assessment quality by j3xucite on 2009-07-13 04:10:07 as
	Improved protein structure selection using decoy-dependent discriminatory functions. [My Copy] BMC structural biology, Vol. 4 (18 June 2004) by K. Wang, B. Fain, M. Levitt, R. Samudrala posted to modelselection by j3xucite on 2009-06-01 03:53:36 as
	The Entropic Landscape of proteins revealing protein folding mechanism : Nature Precedings [My Copy] posted to entropyfolding by j3xucite on 2009-01-14 03:01:51 as along with 1 person vphan
	The meaning of alignment: lessons from structural diversity [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Walter Pirovano, Anton K. Feenstra, Jaap Heringa posted to structurealignment by j3xucite on 2009-01-05 22:12:23 as along with 13 people pimmy swtimmer dimka mhamada reyez treangen markusd nuin kshameer druvus chad_davis taguchi pansapiens
	Accelerating Resolution-of-the-Identity Second-Order Moller−Plesset Quantum Chemistry Calculations with Graphical Processing Units† [My Copy] The Journal of Physical Chemistry A, Vol. 112, No. 10. (1 March 2008), pp. 2049-2057. by Leslie Vogt, Roberto Olivares-Amaya, Sean Kermes, Yihan Shao, Carlos Amador-Bedolla, Alan Aspuru-Guzik posted to gpu by j3xucite on 2009-01-04 19:20:01 as along with 1 person ihaque
	A simple method to generate non-trivial alternate alignments of protein sequences. [My Copy] Journal of molecular biology, Vol. 219, No. 4. (20 June 1991), pp. 727-732. by M. A. Saqi, M. J. Sternberg posted to alternativealignment by j3xucite on 2008-12-18 18:03:43 as
	Amino acid substitution matrices from protein blocks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 22. (15 November 1992), pp. 10915-10919. by S. Henikoff, J. G. Henikoff posted to blosum by j3xucite on 2008-12-17 21:53:40 as along with 14 people rshe rpetrenko BioNica maria_hauser cmura alefox sebk cen4ik kaarsinogen dgront gurkanbebek Iden-J_GluR cjeans ashwinma
	Recognition of errors in three-dimensional structures of proteins. [My Copy] Proteins, Vol. 17, No. 4. (December 1993), pp. 355-362. by M. J. Sippl posted to energy function by j3xucite on 2008-12-17 21:47:28 as along with 2 people medic0747 hmk
	Evaluating the absolute quality of a single protein model using structural features and support vector machines. [My Copy] Proteins (25 September 2008) by Zheng Wang, Allison N N. Tegge, Jianlin Cheng posted to modelqualityassessment by j3xucite on 2008-12-17 00:54:37 as along with 1 person pjcite
	Predicting residue-residue contact maps by a two-layer, integrated neural-network method [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 999A. (2008), NA. by Bin Xue, Eshel Faraggi, Yaoqi Zhou posted to contactmapprediction by j3xucite on 2008-12-17 00:40:26 as along with 1 person Lombardo_7
	How well can the accuracy of comparative protein structure models be predicted? [My Copy] Protein science : a publication of the Protein Society, Vol. 17, No. 11. (November 2008), pp. 1881-1893. by D. Eramian, N. Eswar, M. Y. Shen, A. Sali posted to modelqualityassessment by j3xucite on 2008-12-16 22:57:34 as
	SP5: improving protein fold recognition by using torsion angle profiles and profile-based gap penalty model. [My Copy] PLoS ONE, Vol. 3, No. 6. (2008) by W. Zhang, S. Liu, Y. Zhou posted to threading by j3xucite on 2008-12-16 18:10:51 as along with 2 people svozil pjcite
	Assessment of RAPTOR's linear programming approach in CAFASP3 [My Copy] Proteins: Structure, Function, and Genetics, Vol. 53, No. S6. (2003), pp. 579-584. by Jinbo Xu, Ming Li posted to protein threading by j3xucite on 2008-12-16 16:44:52 as
	SELECTpro: effective protein model selection using a structure-based energy function resistant to BLUNDERs [My Copy] BMC Structural Biology, Vol. 8 (03 December 2008), 52. by Arlo Randall, Pierre Baldi posted to modelqualityassess by j3xucite on 2008-12-14 17:50:14 as
	Profile Comparer: a program for scoring and aligning profile hidden Markov models [My Copy] Bioinformatics, Vol. 24, No. 22. (15 November 2008), pp. 2630-2631. by Martin Madera posted to no-tag by j3xucite on 2008-11-09 16:14:42 as along with 3 people and 1 group tonamswish djkt nuin iSEEM
	Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 64, No. 3. (2006), pp. 587-600. by Yen H. Tan, He Huang, Daisuke Kihara posted to no-tag by j3xucite on 2008-11-08 17:10:39 as along with 1 person pjcite
	Fast accurate evaluation of protein solvent exposure [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 57, No. 3. (2004), pp. 565-576. by Naigong Zhang, Chen Zeng, Ned S. Wingreen posted to no-tag by j3xucite on 2008-11-04 22:35:31 as along with 1 person hryk
	Configurational-bias sampling technique for predicting side-chain conformations in proteins [My Copy] Protein Sci, Vol. 15, No. 9. (1 September 2006), pp. 2029-2039. by Tushar Jain, David S. Cerutti, Andrew J. Mccammon posted to no-tag by j3xucite on 2008-11-04 22:04:39 as
	OPUS-Rota: A fast and accurate method for side-chain modeling [My Copy] Protein Sci, Vol. 17, No. 9. (1 September 2008), pp. 1576-1585. by Mingyang Lu, Athanasios D. Dousis, Jianpeng Ma posted to no-tag by j3xucite on 2008-11-04 16:58:03 as
	The effectiveness of position- and composition-specific gap costs for protein similarity searches [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i15-23. by Aleksandar Stojmirovic, Michael E. Gertz, Stephen F. Altschul, Yi-Kuo Yu posted to no-tag by j3xucite on 2008-11-03 17:16:13 as
	Gaps in structurally similar proteins: towards improvement of multiple sequence alignment. [My Copy] Proteins, Vol. 54, No. 1. (1 January 2004), pp. 71-87. by J. O. Wrabl, N. V. Grishin posted to no-tag by j3xucite on 2008-11-03 16:36:06 as along with 4 people and 2 groups ana barry analogAI granujilla structural_bioinformatics Bioinformatics
	Modular DAG-RNN architectures for assembling coarse protein structures. [My Copy] J Comput Biol, Vol. 13, No. 3. (April 2006), pp. 631-650. by G. Pollastri, A. Vullo, P. Frasconi, P. Baldi posted to no-tag by j3xucite on 2008-11-02 21:38:03 as along with 1 person wouterboomsma
	Evolutionary potentials: structure specific knowledge-based potentials exploiting the evolutionary record of sequence homologs [My Copy] Genome Biology, Vol. 9, No. 4. (08 April 2008), R68. by Alejandro Panjkovich, Francisco Melo, Marc M. Renom posted to no-tag by j3xucite on 2008-11-02 05:39:48 as along with 2 people and 1 group sebk kgutwin KeatingJClub
	Frequency of gaps observed in a structurally aligned protein pair database suggests a simple gap penalty function [My Copy] Nucl. Acids Res., Vol. 32, No. 9. (20 May 2004), pp. 2838-2843. by Nalin C. Goonesekere, Byungkook Lee posted to no-tag by j3xucite on 2008-11-02 02:59:03 as along with 2 people and 2 groups ana analogAI structural_bioinformatics Bioinformatics
	Variable gap penalty for protein sequence structure alignment [My Copy] Protein Engineering, Design and Selection, Vol. 19, No. 3. (March 2006), pp. 129-133. by M. S. Madhusudhan, Marc A. Marti-Renom, Roberto Sanchez, Andrej Sali posted to no-tag by j3xucite on 2008-11-02 02:36:16 as along with 1 person BioNica
	Information and discrimination in pairwise contact potentials [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Armando D. Solis, S. Rackovsky posted to no-tag by j3xucite on 2008-10-30 16:18:42 as along with 2 people and 1 group kgutwin RamuAnandakrishnan KeatingJClub
	Property-based sequence representations do not adequately encode local protein folding information [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 4. (2007), pp. 785-788. by A. D. Solis, S. Rackovsky posted to no-tag by j3xucite on 2008-10-30 16:14:53 as
	Optimally informative backbone structural propensities in proteins. [My Copy] Proteins, Vol. 48, No. 3. (15 August 2002), pp. 463-486. by A. D. Solis, S. Rackovsky posted to no-tag by j3xucite on 2008-10-29 22:51:32 as along with 1 person karbak
	Local propensities and statistical potentials of backbone dihedral angles in proteins. [My Copy] J Mol Biol, Vol. 342, No. 2. (10 September 2004), pp. 635-649. by M. R. Betancourt, J. Skolnick posted to no-tag by j3xucite on 2008-10-29 17:33:22 as along with 2 people and 1 group Einat dgront structural_bioinformatics
	Efficient Monte Carlo trial moves for polypeptide simulations. [My Copy] J Chem Phys, Vol. 123, No. 17. (1 November 2005) by M. R. Betancourt posted to no-tag by j3xucite on 2008-10-29 04:15:45 as along with 2 people jwm dgront
	Orientational potentials extracted from protein structures improve native fold recognition. [My Copy] Protein Sci, Vol. 13, No. 4. (April 2004), pp. 862-874. by N. V. Buchete, J. E. Straub, D. Thirumalai posted to no-tag by j3xucite on 2008-10-26 21:05:13 as along with 2 people thamelry kgutwin
	Contact prediction in protein modeling. Scoring, folding and refinement of coarse-grained models. [My Copy] BMC Structural Biology, Vol. 8 (11 August 2008), 36. by Dorota Latek, Andrzej Kolinski posted to no-tag by j3xucite on 2008-10-24 07:01:26 as along with 3 people RamuAnandakrishnan mcbla sterl0601
	Advances in Rosetta protein structure prediction on massively parallel systems [My Copy] IBM J. Res. Dev., Vol. 52, No. 1. (2008), pp. 7-17. by S. Raman, B. Qian, D. Baker, R. C. Walker posted to no-tag by j3xucite on 2008-10-23 18:27:41 as along with 1 person kgutwin
	QMEAN: A comprehensive scoring function for model quality assessment. [My Copy] Proteins (11 October 2007) by Pascal Benkert, Silvio C E C. Tosatto, Dietmar Schomburg posted to no-tag by j3xucite on 2008-10-23 04:05:34 as along with 4 people cat_hutchinson68 larian sebk cdeane
	Towards accurate residue–residue hydrophobic contact prediction for alpha helical proteins via integer linear optimization [My Copy] PROTEINS: Structure, Function and Bioinformatics (2008) by R. Rajgaria, S. R. Mcallister, C. A. Floudas posted to no-tag by j3xucite on 2008-10-16 16:17:46 as
	Fragment-HMM: A New Approach To Protein Structure Prediction [My Copy] Protein Science (22 August 2008), ps.036442.108. by Shuai C. Li, Dongbo Bu, Jinbo Xu, Ming Li posted to no-tag by j3xucite on 2008-10-05 20:26:17 as along with 2 people mkotlyar xingwuliu
	Improvement in protein sequence-structure alignment using insertion/deletion frequency arrays. [My Copy] Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference, Vol. 6 (2007), pp. 335-342. by K. Ellrott, J. T. Guo, V. Olman, Y. Xu posted to no-tag by j3xucite on 2008-10-05 04:18:55 as
	Introduction to Protein Structure [My Copy] (15 January 1999) by Carl-Ivar Branden, John Tooze posted to no-tag by j3xucite on 2008-10-02 22:55:56 as along with 3 people faccioli reyez aalibes
	SPICKER: a clustering approach to identify near-native protein folds. [My Copy] J Comput Chem, Vol. 25, No. 6. (30 April 2004), pp. 865-871. by Y. Zhang, J. Skolnick posted to no-tag by j3xucite on 2008-10-02 20:39:48 as along with 4 people and 1 group klexa oteri iakes nigham Structural Biology Group TorVergata
	Physically realistic homology models built with ROSETTA can be more accurate than their templates. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 14. (4 April 2006), pp. 5361-5366. by K. M. Misura, D. Chivian, C. A. Rohl, D. E. Kim, D. Baker posted to no-tag by j3xucite on 2008-09-24 18:21:46 as along with 6 people kgutwin jwm balajis dgront bilab BioNica
	Simulated Annealing and Boltzmann Machines: A Stochastic Approach to Combinatorial Optimization and Neural Computing [My Copy] (1991) by Emile Aarts, Jan Korst posted to no-tag by j3xucite on 2008-09-24 18:16:01 as

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bibtex-import	190
protein	83
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