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	Assessment of RAPTOR's linear programming approach in CAFASP3 [My Copy] Proteins: Structure, Function, and Genetics, Vol. 53, No. S6. (2003), pp. 579-584. by Jinbo Xu, Ming Li posted to protein threading by j3xucite on 2008-12-16 16:44:52 as
	MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Sitao Wu, Yang Zhang posted to protein threading by j3xucite on 2008-03-19 21:13:34 as
	Protein folding by a biased Monte Carlo procedure in the dihedral angle space. [My Copy] FASEB J, Vol. 10, No. 1. (January 1996), pp. 119-125. by B. Lee, N. Kurochkina, H. S. Kang posted to folding protein by j3xucite on 2008-02-23 03:31:25 as
	A backbone-based theory of protein folding [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 45. (7 November 2006), pp. 16623-16633. by George D. Rose, Patrick J. Fleming, Jayanth R. Banavar, Amos Maritan posted to folding protein by j3xucite on 2008-02-18 19:29:45 as along with 7 people carlosjavierna flbarroso edws dkoveal thaliana choonpeng marck
	The dominant role of side-chain backbone interactions in structural realization of amino acid code. ChiRotor: A side-chain prediction algorithm based on side-chain backbone interactions [My Copy] Protein Sci (22 January 2007), ps.062447107. by Velin Z. Spassov, Lisa Yan, Paul K. Flook posted to chain protein side by j3xucite on 2008-02-01 16:55:04 as
	Propensities, probabilities, and the Boltzmann hypothesis [My Copy] Protein Sci, Vol. 12, No. 6. (1 June 2003), pp. 1298-1302. by David Shortle posted to folding protein by j3xucite on 2008-01-25 05:28:14 as
	Probabilistic sampling of protein conformations: New hope for brute force? [My Copy] Proteins: Structure, Function, and Genetics, Vol. 46, No. 1. (2002), pp. 8-23. by Howard J. Feldman, Christopher W. V. Hogue posted to conformation protein sampling by j3xucite on 2008-01-24 20:40:39 as
	P-SEA: a new efficient assignment of secondary structure from C alpha trace of proteins [My Copy] Comput. Appl. Biosci., Vol. 13, No. 3. (1 June 1997), pp. 291-295. by G. Labesse, N. Colloc'h, J. Pothier, J. P. Mornon posted to protein structure by j3xucite on 2008-01-15 22:19:38 as along with 2 people thamelry wouterboomsma
	A simplified representation of protein conformations for rapid simulation of protein folding [My Copy] Journal of Molecular Biology, Vol. 104 (1976), pp. 59-107. by M. Levitt posted to folding protein by j3xucite on 2008-01-14 02:21:59 as
	SCOP: a structural classification of proteins database for the investigation of sequences and structures. [My Copy] Journal of molecular biology, Vol. 247, No. 4. (7 April 1995), pp. 536-540. by A. G. Murzin, S. E. Brenner, T. Hubbard, C. Chothia posted to protein structure by j3xucite on 2008-01-13 04:26:09 as along with 14 people timhubbard flbarroso yuslinaz semin pjcite dimka chrn chad_davis sriram_s aengisch massivemayhem cjeans siebertm sim82
	Ab initio construction of protein tertiary structures using a hierarchical approach. [My Copy] J Mol Biol, Vol. 300, No. 1. (30 June 2000), pp. 171-185. by Y. Xia, E. S. Huang, M. Levitt, R. Samudrala posted to folding protein by j3xucite on 2008-01-11 02:45:22 as along with 1 person aengisch
	A Novel Approach to Decoy Set Generation: Designing a Physical Energy Function Having Local Minima with Native Structure Characteristics [My Copy] Journal of Molecular Biology, Vol. 329, No. 1. (23 May 2003), pp. 159-174. by Chen Keasar, Michael Levitt posted to folding protein by j3xucite on 2007-12-21 18:06:39 as
	Stochastic Pairwise Alignments and Scoring Methods for Comparative Protein Structure Modeling [My Copy] posted to alignment protein by j3xucite on 2007-11-19 03:19:18 as
	Stochastic Pairwise Alignments and Scoring Methods for Comparative Protein Structure Modeling [My Copy] J. Chem. Inf. Model. (29 March 2007) by A. C. Marko, K. Stafford, T. Wymore posted to alignment protein by j3xucite on 2007-11-19 02:45:36 as along with 1 person daevans
	In silico protein recombination: enhancing template and sequence alignment selection for comparative protein modelling. [My Copy] J Mol Biol, Vol. 328, No. 3. (2 May 2003), pp. 593-608. by B. Contreras-Moreira, P. W. Fitzjohn, P. A. Bates posted to protein threading by j3xucite on 2007-11-18 01:17:01 as along with 1 person ujh
	In search for more accurate alignments in the twilight zone [My Copy] Protein Sci, Vol. 11, No. 7. (1 July 2002), pp. 1702-1713. by Lukasz Jaroszewski, Weizhong Li, Adam Godzik posted to protein by j3xucite on 2007-11-15 23:00:30 as
	Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection [My Copy] Nucleic Acids Research, Vol. 34, No. 17. (October 2006), pp. e112-e112. by Chivian, Dylan, Baker, David posted to protein by j3xucite on 2007-11-15 17:18:46 as along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
	Distributions in Protein Conformation Space: Implications for Structure Prediction and Entropy [My Copy] Biophysical Journal (2004) posted to protein by j3xucite on 2007-11-10 05:07:42 as
	A fast method to sample real protein conformational space [My Copy] Proteins: Structure, Function, and Genetics, Vol. 39, No. 2. (2000), pp. 112-131. by Howard J. Feldman, Christopher W. V. Hogue posted to protein by j3xucite on 2007-11-10 04:43:18 as along with 2 people apaydin yxue
	Backbone building from quadrilaterals: A fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates [My Copy] Journal of Computational Chemistry, Vol. 28, No. 9. (15 July 2007), pp. 1593-1597. by D. Gront, S. Kmiecik, A. Kolinski posted to protein by j3xucite on 2007-11-09 15:18:04 as along with 7 people Gabriel439 mcbla rabio wouterboomsma dgront sekmi mijam
	TOUCHSTONE II: a new approach to ab initio protein structure prediction. [My Copy] Biophys J, Vol. 85, No. 2. (August 2003), pp. 1145-1164. by Y. Zhang, A. Kolinski, J. Skolnick posted to protein by j3xucite on 2007-11-08 16:18:05 as along with 1 person mkurc
	TOUCHSTONE: An ab initio protein structure prediction method that uses threading-based tertiary restraints [My Copy] Proceedings of the National Academy of Sciences, Vol. 98, No. 18. (28 August 2001), pp. 10125-10130. by Daisuke Kihara, Hui Lu, Andrzej Kolinski, Jeffrey Skolnick posted to protein by j3xucite on 2007-11-08 16:17:34 as along with 1 person saunders
	From the Cover: The network of sequence flow between protein structures [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 28. (10 July 2007), pp. 11627-11632. by Leonid Meyerguz, Jon Kleinberg, Ron Elber posted to protein by j3xucite on 2007-11-07 16:41:03 as along with 2 people carlk saket
	HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins1 [My Copy] Journal of Molecular Biology, Vol. 301, No. 1. (04 August 2000), pp. 173-190. by C. Bystroff, V. Thorsson, D. Baker posted to protein structure by j3xucite on 2007-11-05 16:51:01 as along with 5 people and 1 group jwm wouterboomsma dgront rabio wenhan MBLAB
	Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors. [My Copy] Journal Molecular Biology, Vol. 218, No. 1. (5 March 1991), pp. 183-194. by L. Holm, C. Sander posted to protein structure by j3xucite on 2007-11-02 17:45:28 as along with 3 people and 2 groups jwm wouterboomsma dgront Radiation_Damage Stressosome
	PISCES: a protein sequence culling server. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1589-1591. by G. Wang, R. L. Dunbrack posted to protein structure by j3xucite on 2007-11-02 17:43:43 as along with 10 people and 2 groups TLVincent reyez barry aalibes kaarsinogen dgront blackbart mloewer ezralanglois chgjb structural_bioinformatics Bioinformatics
	SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace. [My Copy] Nucleic Acids Research, Vol. 34, No. Web Server issue. (1 July 2006) by J. Maupetit, R. Gautier, P. Tufféry posted to protein structure by j3xucite on 2007-11-02 17:41:16 as along with 2 people Gabriel439 mijam
	Small libraries of protein fragments model native protein structures accurately. [My Copy] Journal of Molecular Biology, Vol. 323, No. 2. (18 October 2002), pp. 297-307. by R. Kolodny, P. Koehl, L. Guibas, M. Levitt posted to protein structure by j3xucite on 2007-11-02 17:37:44 as along with 3 people and 2 groups ana barry eckart_bindewald structural_bioinformatics Bioinformatics
	The PSIPRED protein structure prediction server [My Copy] Bioinformatics, Vol. 16, No. 4. (1 April 2000), pp. 404-405. by Liam J. Mcguffin, Kevin Bryson, David T. Jones posted to prediction protein structure by j3xucite on 2007-11-02 17:33:42 as along with 2 people RandyRR granujilla
	Modelling the polypeptide backbone with 'spare parts' from known protein structures [My Copy] Protein Eng., Vol. 2, No. 5. (1 January 1989), pp. 335-345. by Michel Claessens, Eric van Cutsem, Ignace Lasters, Shoshana Wodak posted to protein structure by j3xucite on 2007-10-31 21:36:06 as along with 2 people rabio dgront
	Using known substructures in protein model building and crystallography. [My Copy] EMBO Journal, Vol. 5 (1986), pp. 819-823. by T. A. Jones, S. Thirup posted to protein structure by j3xucite on 2007-10-31 21:33:29 as
	Dependency between consecutive local conformations helps assemble protein structures from secondary structures using Go potential and greedy algorithm [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 4., pp. 732-740. by Pierre Tuffery, Philippe Derreumaux posted to prediction protein structure by j3xucite on 2007-10-31 21:08:24 as along with 1 person thamelry
	"Pinning strategy": a novel approach for predicting the backbone structure in terms of protein blocks from sequence. [My Copy] J Biosci, Vol. 32, No. 1. (January 2007), pp. 51-70. by A. G. De Brevern, C. Etchebest, C. Benros, S. Hazout posted to prediction protein structure by j3xucite on 2007-10-01 15:50:53 as along with 1 person wouterboomsma
	A hidden markov model derived structural alphabet for proteins. [My Copy] J Mol Biol, Vol. 339, No. 3. (4 June 2004), pp. 591-605. by A. C. Camproux, R. Gautier, P. Tufféry posted to folding protein by j3xucite on 2007-09-26 22:22:22 as
	Sampling Realistic Protein Conformations Using Local Structural Bias. [My Copy] PLoS Comput Biol, Vol. 2, No. 9. (22 September 2006) by Thomas Hamelryck, John T T. Kent, Anders Krogh posted to folding protein by j3xucite on 2007-09-13 22:34:57 as along with 3 people xingwuliu wouterboomsma hmk
	Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library. [My Copy] Biochemistry, Vol. 44, No. 28. (19 July 2005), pp. 9691-9702. by A. K. Jha, A. Colubri, M. H. Zaman, S. Koide, T. R. Sosnick, K. F. Freed posted to folding protein by j3xucite on 2007-09-13 22:31:13 as
	Minimalist representations and the importance of nearest neighbor effects in protein folding simulations. [My Copy] J Mol Biol, Vol. 363, No. 4. (3 November 2006), pp. 835-857. by A. Colubri, A. K. Jha, M. Y. Shen, et al.A. Sali, R. S. Berry, T. R. Sosnick, K. F. Freed posted to folding protein by j3xucite on 2007-09-13 22:30:42 as along with 2 people mkotlyar mijam
	A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction. [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (3 June 2005), pp. 285-289. by John Moult posted to prediction protein structure by j3xucite on 2007-09-13 22:15:12 as along with 12 people and 2 groups timhubbard flbarroso mcbla ujh nigham thaliana warlock6x3 marcius ffranca dgront granujilla mingzhi BioinfoCIPF SGU-CIPF
	Critical assessment of methods of protein structure prediction (CASP)--round 6. [My Copy] Proteins, Vol. 61 Suppl 7 (2005), pp. 3-7. by J. Moult, K. Fidelis, B. Rost, T. Hubbard, A. Tramontano posted to prediction protein structure by j3xucite on 2007-09-13 22:13:47 as along with 5 people timhubbard dgront aengisch schuylrp saunders
	Critical assessment of methods of protein structure prediction (CASP)-round V. [My Copy] Proteins, Vol. 53 Suppl 6, No. S6. (2003), pp. 334-339. by J. Moult, K. Fidelis, A. Zemla, T. Hubbard posted to prediction protein structure by j3xucite on 2007-09-13 22:13:21 as along with 1 person timhubbard
	Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions [My Copy] Journal of Molecular Biology, Vol. 268, No. 1. (25 April 1997), pp. 209-225. by K. Simons posted to folding protein by j3xucite on 2007-09-13 22:10:26 as along with 12 people and 2 groups chemrahul82 paddydu Diego_Prada reyez guxiyou ana jwm vavi wouterboomsma hmk mijam joule structural_bioinformatics Bioinformatics
	Building native protein conformation from highly approximate backbone torsion angles. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 45. (8 November 2005), pp. 16227-16232. by H. Gong, P. J. Fleming, G. D. Rose posted to folding protein by j3xucite on 2007-08-15 03:45:46 as along with 2 people Diego_Prada allmensch
	The design and characterization of two proteins with 88% sequence identity but different structure and function [My Copy] PNAS, Vol. 104, No. 29. (17 July 2007), pp. 11963-11968. by Patrick A. Alexander, Yanan He, Yihong Chen, John Orban, Philip N. Bryan posted to design protein by j3xucite on 2007-07-27 17:36:04 as along with 3 people tjimenez Jporci joshuabhk
	Predicting transmembrane protein topology with a hidden markov model: application to complete genomes1 [My Copy] Journal of Molecular Biology, Vol. 305, No. 3. (19 January 2001), pp. 567-580. by Anders Krogh, Björn Larsson, Gunnar von Heijne, Erik L. L. Sonnhammer posted to hmm protein transmembrane by j3xucite on 2007-06-07 02:41:09 as along with 11 people azazello tfuji niallhaslam katholt thaliana bjorns andreasauerwein happy_manatee massivemayhem twenta sebk
	Protein folding and the organization of the protein topology universe [My Copy] Trends in Biochemical Sciences, Vol. 30, No. 1. (January 2005), pp. 13-19. by Kresten Lindorff-Larsen, Peter Rogen, Emanuele Paci, Michele Vendruscolo, Christopher M. Dobson posted to folding protein by j3xucite on 2007-05-23 17:07:13 as
	Minimalist Representations and the Importance of Nearest Neighbor Effects in Protein Folding Simulations [My Copy] Journal of Molecular Biology, Vol. 363, No. 4. (3 November 2006), pp. 835-857. by Andres Colubri, Abhishek K. Jha, Min-Yi Shen, et al.Andrej Sali, Stephen R. Berry, Tobin R. Sosnick, Karl F. Freed posted to folding protein by j3xucite on 2007-05-23 17:03:17 as
	Bayesian statistical analysis of protein side-chain rotamer preferences. [My Copy] Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1661-1681. by R. L. Dunbrack, F. E. Cohen posted to packing protein side-chain by j3xucite on 2007-05-23 17:02:41 as along with 12 people and 2 groups karbak nknii dgront blackbart kazemi rsantana hmk LamBras mijam jwm phoenixzxl zwang MuraLab TCR_Signaling
	Inferring protein domain interactions from databases of interacting proteins. [My Copy] Genome Biol, Vol. 6, No. 10. (2005) by R. Riley, C. Lee, C. Sabatti, D. Eisenberg posted to interaction protein by j3xucite on 2007-05-11 23:32:26 as along with 4 people chad_davis maryee iris_2001 phoenixzxl
	Protein ranking: from local to global structure in the protein similarity network. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 17. (27 April 2004), pp. 6559-6563. by J. Weston, A. Elisseeff, D. Zhou, C. S. Leslie, W. S. Noble posted to protein ranking by j3xucite on 2007-05-04 22:24:22 as along with 4 people amonika gulkur eweaver yama_tah
	Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins. [My Copy] J Comput Chem, Vol. 25, No. 5. (15 April 2004), pp. 712-724. by E. Eyal, R. Najmanovich, B. J. McConkey, M. Edelman, V. Sobolev posted to packing protein side-chain by j3xucite on 2007-02-19 18:59:22 as along with 3 people hryk blackbart mirzazadeh

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bibtex-import	190
protein	83
structure	41
prediction	19
folding	18
threading	17
interaction	14
function	13
rdc	13
nmr	12
energy	10
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linear	2
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structurealignment	1
system	1
training	1
transmembrane	1
tree-decomposition	1
unassigned	1
using	1
voronoi	1
wang	1

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