Inparanoid: a comprehensive database of eukaryotic orthologs. Export

@article{citeulike:224563, abstract = {The Inparanoid eukaryotic ortholog database (http://inparanoid.cgb.ki.se/) is a collection of pairwise ortholog groups between 17 whole genomes; Anopheles gambiae, Caenorhabditis briggsae, Caenorhabditis elegans, Drosophila melanogaster, Danio rerio, Takifugu rubripes, Gallus gallus, Homo sapiens, Mus musculus, Pan troglodytes, Rattus norvegicus, Oryza sativa, Plasmodium falciparum, Arabidopsis thaliana, Escherichia coli, Saccharomyces cerevisiae and Schizosaccharomyces pombe. Complete proteomes for these genomes were derived from Ensembl and UniProt and compared pairwise using Blast, followed by a clustering step using the Inparanoid program. An Inparanoid cluster is seeded by a reciprocally best-matching ortholog pair, around which inparalogs (should they exist) are gathered independently, while outparalogs are excluded. The ortholog clusters can be searched on the website using Ensembl gene/protein or UniProt identifiers, annotation text or by Blast alignment against our protein datasets. The entire dataset can be downloaded, as can the Inparanoid program itself.}, address = {Center for Genomics and Bioinformatics, Karolinska Institutet, S-171 77 Stockholm, Sweden.}, author = {O'Brien, K. P. and Remm, M. and Sonnhammer, E. L.}, citeulike-article-id = {224563}, citeulike-linkout-0 = {http://view.ncbi.nlm.nih.gov/pubmed/15608241}, citeulike-linkout-1 = {http://www.hubmed.org/display.cgi?uids=15608241}, citeulike-linkout-2 = {http://www.wormbase.org/db/misc/paper?name=WBPaper00030779}, day = {1}, issn = {1362-4962}, journal = {Nucleic Acids Research}, keywords = {orthologue, resource}, month = {January}, number = {Database issue}, posted-at = {2007-07-09 14:58:38}, priority = {0}, title = {Inparanoid: a comprehensive database of eukaryotic orthologs.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/15608241}, volume = {33}, year = {2005} }

TY - JOUR ID - citeulike:224563 L3 - citeulike-article-id:224563 N2 - The Inparanoid eukaryotic ortholog database (http://inparanoid.cgb.ki.se/) is a collection of pairwise ortholog groups between 17 whole genomes; Anopheles gambiae, Caenorhabditis briggsae, Caenorhabditis elegans, Drosophila melanogaster, Danio rerio, Takifugu rubripes, Gallus gallus, Homo sapiens, Mus musculus, Pan troglodytes, Rattus norvegicus, Oryza sativa, Plasmodium falciparum, Arabidopsis thaliana, Escherichia coli, Saccharomyces cerevisiae and Schizosaccharomyces pombe. Complete proteomes for these genomes were derived from Ensembl and UniProt and compared pairwise using Blast, followed by a clustering step using the Inparanoid program. An Inparanoid cluster is seeded by a reciprocally best-matching ortholog pair, around which inparalogs (should they exist) are gathered independently, while outparalogs are excluded. The ortholog clusters can be searched on the website using Ensembl gene/protein or UniProt identifiers, annotation text or by Blast alignment against our protein datasets. The entire dataset can be downloaded, as can the Inparanoid program itself. IS - Database issue JF - Nucleic Acids Research SN - 1362-4962 AD - Center for Genomics and Bioinformatics, Karolinska Institutet, S-171 77 Stockholm, Sweden. TI - Inparanoid: a comprehensive database of eukaryotic orthologs. VL - 33 KW - orthologue KW - resource AU - O'Brien, KP AU - Remm, M AU - Sonnhammer, EL PY - 2005/01/01/ UR - http://view.ncbi.nlm.nih.gov/pubmed/15608241 ER -