january's library 137 articles Export

	PfamAlyzer: Domain-Centric Homology Search. [My Copy] Bioinformatics (31 October 2007) by Volker Hollich, Erik L L L. Sonnhammer posted to no-tag by january on 2007-12-12 07:42:28 as along with 1 person cjeans
	The Modular Organization of Domain Structures: Insights into Protein–Protein Binding [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239. by Del, Pablo Carbonell posted to no-tag by january on 2007-12-12 07:42:04 as along with 3 people Evangelia mingzhi Ema
	Modeling the Evolution of Protein Domain Architectures Using Maximum Parsimony [My Copy] Journal of Molecular Biology, Vol. 366, No. 1. (2007), pp. 307-315. by J. H. Fong, L. Y. Geer, A. R. Panchenko, S. H. Bryant posted to bibtex-import by january on 2007-12-12 07:36:23 as
	Evolution by gene duplication: an update [My Copy] Trends Ecol. Evol, Vol. 18, No. 6. (2003) by J. Zhang posted to bibtex-import by january on 2007-12-12 07:36:23 as
	Comparative analysis of protein domain organization. [My Copy] Genome Res, Vol. 14, No. 3. (2004), pp. 343-53. by Y. Ye, A. Godzik posted to analysis animals arabidopsis archaeal bacterial bibtex-import biologymethodsstatistics caenorhabditis cerevisiae cluster comparative computational data drosophila elegans fungal genetic genome govt heterogeneity human numerical phs plant protein proteinschemistrygenetics proteinschemistrygeneticsphysiology proteomechemistrygeneticsphysiology saccharomyces structure study support tertiarygeneticsphysiology us by january on 2007-12-12 07:36:22 as
	Phylogeny determined by protein domain content. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 2. (Jan 2005), pp. 373-378. by S. Yang, R. F. Doolittle, P. E. Bourne posted to animals archaea bacteria bibtex-import folding genomics phylogeny protein xenopus by january on 2007-12-12 07:36:22 as
	Evolution of gene fusions: horizontal transfer versus independent events. [My Copy] Genome Biol, Vol. 3, No. 5. (2002) by Itai Yanai, Yuri I. Wolf, Eugene V. Koonin posted to acid archaeal bacterial bibtex-import databases dna evolution fungal gene genes genetic genome homology horizontal molecular nucleic phylogeny recombination sequence transfer by january on 2007-12-12 07:36:22 as
	Emergence of primate genes by retrotransposon-mediated sequence transduction. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 47. (Nov 2006), pp. 17608-17613. by Jinchuan Xing, Hui Wang, Victoria P. Belancio, Richard Cordaux, Prescott L. Deininger, Mark A. Batzer posted to bibtex-import by january on 2007-12-12 07:36:22 as
	Evolutionary cores of domain co-occurrence networks. [My Copy] BMC Evol Biol, Vol. 5, No. 1. (2005) by Stefan Wuchty, Eivind Almaas posted to analysis animals bibtex-import binding biology cerevisiae cluster computational databases evolution genetic genomics humans interaction mapping models molecular protein proteins proteomics saccharomyces sequence signal species specificity statistical structure tertiary transduction by january on 2007-12-12 07:36:22 as
	Scale-free behavior in protein domain networks. [My Copy] Mol Biol Evol, Vol. 18, No. 9. (Sep 2001), pp. 1694-1702. by S. Wuchty posted to acid amino animals bibtex-import binding caenorhabditis cerevisiae coli databases drosophila elegans escherichia evolution factual humans melanogaster methanococcus molecular phylogeny protein proteins proteome saccharomyces sequence sites structure tertiary by january on 2007-12-12 07:36:22 as
	Scale-free behavior in protein domain networks. [My Copy] Mol. Biol. Evol., Vol. 18, No. 9. (2001), pp. 1694-702. by S. Wuchty posted to acid amino animals bibtex-import binding caenorhabditis cerevisiaegenetics coligenetics databases drosophila elegansgenetics escherichia evolution factual govt humans melanogastergenetics methanococcusgenetics molecular non-us phylogeny protein proteinschemistrygenetics proteome research saccharomyces sequence sitesgenetics structure support tertiarygenetics by january on 2007-12-12 07:36:21 as
	Interaction and domain networks of yeast. [My Copy] Proteomics, Vol. 2, No. 12. (Dec 2002), pp. 1715-1723. by Stefan Wuchty posted to bibtex-import binding cerevisiae data interaction interpretation mapping protein proteins proteomics saccharomyces statistical structure tertiary by january on 2007-12-12 07:36:21 as
	The Universal Protein Resource (UniProt): an expanding universe of protein information. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D187-D191. by C. H. Wu, R. Apweiler, A. Bairoch, et al.D. A. Natale, W. C. Barker, B. Boeckmann, S. Ferro, E. Gasteiger, H. Huang, R. Lopez, M. Magrane, M. J. Martin, R. Mazumder, C. O'Donovan, N. Redaschi, B. Suzek posted to analysis bibtex-import databases integration interface internet protein proteins proteome sequence systems user-computer by january on 2007-12-12 07:36:21 as
	Genome trees and the tree of life. [My Copy] Trends Genet, Vol. 18, No. 9. (Sep 2002), pp. 472-479. by Yuri I. Wolf, Igor B. Rogozin, Nick V. Grishin, Eugene V. Koonin posted to alignment analysis animals bibtex-import biology computational evolution gene genetic genetics genome horizontal humans models molecular phylogeny protein sequence transfer variation by january on 2007-12-12 07:36:21 as
	Distribution of protein folds in the three superkingdoms of life. [My Copy] Genome Res, Vol. 9, No. 1. (Jan 1999), pp. 17-26. by Y. I. Wolf, S. E. Brenner, P. A. Bash, E. V. Koonin posted to algorithms archaea bacteria bibtex-import biology cells computational distributions eukaryotic folding protein statistical by january on 2007-12-12 07:36:21 as
	The unusual transhydrogenase of Entamoeba histolytica. [My Copy] FEBS Lett., Vol. 488 (2001), pp. 51-4. by C. J. Weston, S. A. White, J. B. Jackson posted to animals bibtex-import catalysis concentration entamoeba govt histolyticaenzymology hydrogen-ion nadmetabolism nadp nadpmetabolism non-us protein proton protons pumpschemistrymetabolism subunits support transhydrogenasechemistrymetabolism by january on 2007-12-12 07:36:21 as
	Rapid motif-based prediction of circular permutations in multi-domain proteins. [My Copy] Bioinformatics, Vol. 21, No. 7. (Apr 2005), pp. 932-937. by Weiner, G. Thomas, Bornberg E. Bauer posted to acid algorithms alignment amino analysis bibtex-import chemical computer data databases genetics models molecular motifs protein proteins sequence simulation statistical structure tertiary variation by january on 2007-12-12 07:36:21 as
	Evolution of circular permutations in multidomain proteins. [My Copy] Mol Biol Evol, Vol. 23, No. 4. (Apr 2006), pp. 734-743. by Weiner, Bornberg E. Bauer posted to bibtex-import by january on 2007-12-12 07:36:21 as
	Domain deletions and substitutions in the modular protein evolution. [My Copy] FEBS J, Vol. 273, No. 9. (2006), pp. 2037-47. by Weiner, F. Beaussart, Bornberg E. Bauer posted to acid amino analysis bacterial bibtex-import dehydrogenaseschemistrygeneticsmetabolism deletiongenetics evolution formate fragmentschemistrygeneticsmetabolism molecular motifsgenetics peptide protein proteinschemistrygeneticsmetabolism sequence structure substitutiongenetics tertiarygenetics by january on 2007-12-12 07:36:21 as
	Global phylogeny determined by the combination of protein domains in proteomes. [My Copy] Mol Biol Evol, Vol. 23, No. 12. (Dec 2006), pp. 2444-2454. by M. Wang, Caetano G. Anolles posted to bibtex-import by january on 2007-12-12 07:36:21 as
	The relationship between domain duplication and recombination. [My Copy] J. Mol. Biol., Vol. 346, No. 1. (2005), pp. 355-65. by C. Vogel, S. A. Teichmann, Pereira J. Leal posted to animals bibtex-import duplication evolution gene genetic geneticgenetics genomics govt humans models molecular non-us protein proteinschemistrygenetics recombination research structure support tertiarygenetics by january on 2007-12-12 07:36:21 as
	Supra-domains: evolutionary units larger than single protein domains. [My Copy] J. Mol. Biol., Vol. 336 (2004), pp. 809-23. by C. Vogel, C. Berzuini, M. Bashton, J. Gough, S. A. Teichmann posted to animals bibtex-import conformation evolution genome govt models molecular non-us protein proteinschemistrymetabolism research support by january on 2007-12-12 07:36:21 as
	Structure, function and evolution of multidomain proteins. [My Copy] Curr. Opin. Struct. Biol., Vol. 14 (2004), pp. 208-16. by C. Vogel, M. Bashton, N. D. Kerrison, C. Chothia, S. A. Teichmann posted to bibtex-import by january on 2007-12-12 07:36:21 as
	The SBASE domain sequence resource, release 12: prediction of protein domain-architecture using support vector machines. [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (2005), pp. D223-5. by K. Vlahovicek, L. Kajan, V. Agoston, S. Pongor posted to alignment analysis artificial bibtex-import databases govt intelligence non-us protein proteinschemistry research sequence structure support tertiary by january on 2007-12-12 07:36:20 as
	Naturally occurring circular permutations in proteins. [My Copy] Protein Eng., Vol. 14 (2001), pp. 533-42. by S. Uliel, A. Fliess, R. Unger posted to acid algorithms amino bibtex-import databases genetic govt models non-us protein proteinschemistrygenetics sequence support by january on 2007-12-12 07:36:20 as
	A simple algorithm for detecting circular permutations in proteins. [My Copy] Bioinformatics, Vol. 15 (1999), pp. 930-6. by S. Uliel, A. Fliess, A. Amir, R. Unger posted to algorithms alignmentmethods analysis bibtex-import biologymethods computational computer data databases display evaluation evolution factors factual genetic lectinsgenetics models molecular proteinmethods proteinsgenetics sequence simulation studies time by january on 2007-12-12 07:36:20 as
	Modules, multidomain proteins and organismic complexity. [My Copy] FEBS J, Vol. 272, No. 19. (Oct 2005), pp. 5064-5078. by Hedvig Tordai, Alinda Nagy, Krisztina Farkas, László Bányai, László Patthy posted to animals bibtex-import biological biology computational evolution exons models molecular protein proteins structure tertiary by january on 2007-12-12 07:36:20 as
	Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL. [My Copy] Bioinformatics, Vol. 16, No. 2. (Feb 2000), pp. 117-124. by S. A. Teichmann, C. Chothia, G. M. Church, J. Park posted to analysis bibtex-import factors library peptide proteins sequence time by january on 2007-12-12 07:36:20 as
	A classification of tasks in bioinformatics. [My Copy] Bioinformatics, Vol. 17, No. 2. (Feb 2001), pp. 180-188. by R. Stevens, C. Goble, P. Baker, A. Brass posted to bibtex-import biology computational questionnaires research by january on 2007-12-12 07:36:20 as
	Modular arrangement of proteins as inferred from analysis of homology. [My Copy] Protein Sci., Vol. 3 (1994), pp. 482-92. by E. L. Sonnhammer, D. Kahn posted to acid alignment amino bacterial bibtex-import data databases design evolution factual govt homology molecular non-us phosphoenolpyruvate phosphotransferase proteinschemistryclassificationgenetics proteinschemistrygenetics sequence software structure sugar support systemgenetics by january on 2007-12-12 07:36:20 as
	More than the sum of their parts: on the evolution of proteins from peptides. [My Copy] Bioessays, Vol. 25 (2003), pp. 837-46. by J. Soding, A. N. Lupas posted to animals bibtex-import conformation evolution folding genetic models molecular peptideschemistry protein recombination rnachemistrymetabolism secondary structure tertiary by january on 2007-12-12 07:36:20 as
	Genome evolution. Gene fusion versus gene fission. [My Copy] Trends Genet, Vol. 16, No. 1. (2000), pp. 9-11. by B. Snel, P. Bork, M. Huynen posted to aspartate bacteriaenzymologygenetics bacterial bibtex-import carbamoyl-phosphate carbamoyltransferasegenetics complexesgenetics evolution genome glutamine-hydrolyzinggenetics molecular multienzyme synthase by january on 2007-12-12 07:36:20 as
	Identification of common molecular subsequences. [My Copy] J. Mol. Biol., Vol. 147 (1981), pp. 195-7. by T. F. Smith, M. S. Waterman posted to base bibtex-import chemical models sequence by january on 2007-12-12 07:36:20 as
	PROSITE: a documented database using patterns and profiles as motif descriptors. [My Copy] Brief Bioinform., Vol. 3 (2002), pp. 265-74. by C. J. Sigrist, L. Cerutti, N. Hulo, et al.A. Gattiker, L. Falquet, M. Pagni, A. Bairoch, P. Bucher posted to acid alignment amino bibtex-import biology computational databases govt internet models molecular motifs non-us protein proteinschemistryclassificationgenetics sequence software structure support tertiary by january on 2007-12-12 07:36:20 as
	Sensitivity and selectivity in protein structure comparison. [My Copy] Protein Sci, Vol. 13, No. 3. (Mar 2004), pp. 773-785. by Michael L. Sierk, William R. Pearson posted to alignment bibtex-import biology computational curve data databases homology interpretation of protein proteins reproducibility results roc sequence software statistical structural validation by january on 2007-12-12 07:36:19 as
	SMART, a simple modular architecture research tool: identification of signaling domains. [My Copy] Proc. Natl. Acad. Sci. U. S. A., Vol. 95 (1998), pp. 5857-64. by J. Schultz, F. Milpetz, P. Bork, C. P. Ponting posted to acid amino analysis animals bibtex-import data genome govt human molecular non-us phylogeny proteinsgenetics sequence software support by january on 2007-12-12 07:36:19 as
	SMART: a web-based tool for the study of genetically mobile domains. [My Copy] Nucleic Acids Res, Vol. 28, No. 1. (Jan 2000), pp. 231-234. by J. Schultz, R. R. Copley, T. Doerks, C. P. Ponting, P. Bork posted to alignment and bibtex-import database information internet management proteins retrieval sequence storage systems by january on 2007-12-12 07:36:19 as
	Structure and mechanism of ABC transporters. [My Copy] Curr. Opin. Struct. Biol., Vol. 12, No. 6. (2002), pp. 754-60. by L. Schmitt, R. Tampe posted to acid alignment amino atp-binding bacterial bibtex-import biological cassette data govt humans models molecular non-us protein proteinschemistrygeneticsmetabolism quaternary research sequence structure support transporterschemistrygeneticsmetabolism transportphysiology by january on 2007-12-12 07:36:19 as
	Birth and death of genes promoted by transposable elements in Oryza sativa. [My Copy] Gene (Nov 2006) by Hiroaki Sakai, Tsuyoshi Tanaka, Takeshi Itoh posted to bibtex-import by january on 2007-12-12 07:36:19 as
	EMBOSS: the European Molecular Biology Open Software Suite. [My Copy] Trends Genet, Vol. 16, No. 6. (2000), pp. 276-7. by P. Rice, I. Longden, A. Bleasby posted to alignmentmethods bibtex-import biology interface internet molecular sequence software user-computer by january on 2007-12-12 07:36:19 as
	De novo identification of LTR retrotransposons in eukaryotic genomes. [My Copy] BMC Genomics, Vol. 8 (2007) by Mina Rho, Jeong H. Choi, Sun Kim, Michael Lynch, Haixu Tang posted to acid amino analysis animals bibtex-import caenorhabditis cells chromosome cluster data dna drosophila elegans eukaryotic genome homology mapping molecular phylogeny repeat retroelements sequence sequences software terminal by january on 2007-12-12 07:36:18 as
	R: A Language and Environment for Statistical Computing [My Copy] (2006) by r posted to bibtex-import by january on 2007-12-12 07:36:18 as
	Graph theoretical insights into evolution of multidomain proteins. [My Copy] J Comput Biol, Vol. 13, No. 2. (Mar 2006), pp. 351-363. by Teresa Przytycka, George Davis, Nan Song, Dannie Durand posted to acids amino animals bibtex-import binding databases evolution humans kinases mice models molecular phylogeny protein proteins protein-tyrosine sites theoretical by january on 2007-12-12 07:36:18 as
	Phosphoenolpyruvate:carbohydrate phosphotransferase systems of bacteria. [My Copy] Microbiol. Rev., Vol. 57 (1993), pp. 543-94. by P. W. Postma, J. W. Lengeler, G. R. Jacobson posted to acid adenylate amino ampphysiology bacteriageneticsmetabolism bacterial bibtex-import biological carbohydratesmetabolism chemotaxis conformation cyclasemetabolism cyclic data energy expression gene genes govt metabolism molecular non-us operon phosphoenolpyruvate phosphorylation phosphotransferase phs protein proteinschemistrygeneticsmetabolism regulation research sequence signal species specificity structural sugar support systemchemistryclassificationgeneticsmetabolism transduction transport us by january on 2007-12-12 07:36:18 as
	Swaposins: circular permutations within genes encoding saposin homologues. [My Copy] Trends Biochem. Sci., Vol. 20 (1995), pp. 179-80. by C. P. Ponting, R. B. Russell posted to acid amino base bibtex-import code data genes genetic genetics glycoproteinsgenetics govt homology inversion molecular non-us nucleic plant sequence support by january on 2007-12-12 07:36:18 as
	Effect of genetic circular permutation near the active site on the activity and stability of an enzyme inhibitor. [My Copy] Biomol. Eng., Vol. 21 (2004), pp. 33-42. by R. T. Piervincenzi, A. Chilkoti posted to bibtex-import by january on 2007-12-12 07:36:18 as
	Ubiquitin in chains. [My Copy] Trends Biochem. Sci., Vol. 25 (2000), pp. 544-8. by C. M. Pickart posted to bibtex-import biopolymersmetabolism complex complexesmetabolism cysteine endopeptidase endopeptidasesmetabolism govt multienzyme phs polyubiquitin proteasome research signal support transduction ubiquitinschemistrymetabolism us by january on 2007-12-12 07:36:17 as
	Evolution of the mouse polyubiquitin-C gene. [My Copy] J. Mol. Evol., Vol. 55 (2002), pp. 202-10. by A. A. Perelygin, F. A. Kondrashov, I. B. Rogozin, M. A. Brinton posted to alignment analysis animals base bibtex-import cgenetics crossing data dna evolution expression gene genetic govt hamsters humans mice molecular over phs phylogeny polymorphism rats recombination regulation research sequence support ubiquitin us by january on 2007-12-12 07:36:17 as
	Improved tools for biological sequence comparison. [My Copy] Proc Natl Acad Sci U S A, Vol. 85, No. 8. (Apr 1988), pp. 2444-2448. by W. R. Pearson, D. J. Lipman posted to acid amino animals antigen base bibtex-import data factors globins growth homology humans information molecular nucleic peptides receptors sequence software systems t-cell transforming by january on 2007-12-12 07:36:17 as
	Rapid and sensitive sequence comparison with FASTP and FASTA. [My Copy] Methods Enzymol, Vol. 183 (1990), pp. 63-98. by W. R. Pearson posted to acid adrenergic algorithms amino animals base beta bibtex-import data dna eye gene homology information library molecular nucleic opsin proteins receptors sequence software systems by january on 2007-12-12 07:36:17 as

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factorschemistrygeneticsmetabolism	1
bacterialgenetics	1
validation	1
methanococcus	1
numerical	1
transforming	1
virusclassificationgenetics	1
dimerization	1
methylasesgenetics	1
hemoglobins	1
studies	1
proteasome	1
genomicsmethods	1
archaeachemistrygenetics	1
cerevisiaegenetics	1
antigen	1
leic	1
bacterialbiosynthesischemistry	1
sequencegenetics	1
acrylamidepharmacology	1
methyltransferasesgenetics	1
evaluation	1
ligases	1
reagents	1
familygenetics	1
core	1
aprotinin	1
engineering	1
transhydrogenasechemistryphysiology	1
design	1
cross-linking	1
resonance	1
adenylate	1
domain	1
adenine-specificgenetics	1
proteinmethods	1
adrenergic	1
crossing	1
complexesmetabolism	1
cysteine	1
leucine	1
polymerase	1
cgenetics	1
muscarinic	1
carbamoyltransferasegenetics	1
s-adenosylmethioninemetabolism	1

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