jasontsai's assembly [15 articles] Export

Recent papers added to jasontsai's library classified by the tag assembly. You can also see everyone's assembly.

	Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2878-2881. by Bas E. Dutilh, Martijn A. Huynen, Marc Strous posted to assembly ngs short-read-assembler short-read-mapping solexa techniques by jasontsai on 2009-07-07 08:11:52 as along with 8 people and 1 group dutilh dakelley druvus kinestetika ThomasDOtto skembel sharpton jmeppley iSEEM
	A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1118-1124. by Tobias Rausch, Sergey Koren, Gennady Denisov, et al.David Weese, Anne-Katrin Emde, Andreas Doring, Knut Reinert posted to assembly gap-closing short-read-mapping by jasontsai on 2009-07-02 14:17:05 as along with 19 people and 2 groups jfr azazello hzoltan cthachuk GustavoLacerda n00c nuin dakelley skembel Thaverkamp reyez TRHvidsten djkt hpaces APRegier pengchy natstreet druvus darian iSEEM Bioinformatics
	ABySS: a parallel assembler for short read sequence data. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1117-1123. by Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J. Jones, Inanç Birol posted to assembly short-read-assembler by jasontsai on 2009-06-04 14:58:20 as along with 26 people and 2 groups jfr cthachuk hzoltan ramonvidal orzenil pachorip GustavoLacerda jonilaserson operon polivares reyez n00c humburg dakelley jessopher idonaldson robsyme neils natstreet AaronDarling druvus rpatward dswan stajich jbhiatt erikarner BergmanLab Mycology
	Generating consensus sequences from partial order multiple sequence alignment graphs. [My Copy] Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 999-1008. by C. Lee posted to assembly est transcriptome by jasontsai on 2009-04-05 18:00:27 as along with 2 people setar antonkratz
	The multiassembly problem: reconstructing multiple transcript isoforms from EST fragment mixtures. [My Copy] Genome Res, Vol. 14, No. 3. (March 2004), pp. 426-441. by Y. Xing, A. Resch, C. Lee posted to assembly est transcriptome by jasontsai on 2009-04-05 17:59:07 as along with 1 person setar
	A graph based algorithm for generating EST consensus sequences [My Copy] Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1371-1375. by Ketil Malde, Eivind Coward, Inge Jonassen posted to assembly est by jasontsai on 2009-04-05 17:56:25 as along with 2 people nwpuzebra nuin
	Genome assembly forensics: finding the elusive mis-assembly [My Copy] Genome Biology, Vol. 9, No. 3. (14 March 2008), R55. by Adam Phillippy, Michael Schatz, Mihai Pop posted to amos assembly by jasontsai on 2009-03-09 21:21:08 as along with 10 people and 1 group n00c Thaverkamp kiekyon dakelley orzenil druvus fernan lp2 Neeperando GustavoLacerda DeNovoAssembly-SIMR
	De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae [My Copy] Genome Research by Josephine A. Reinhardt, David A. Baltrus, Marc T. Nishimura, William R. Jeck, Corbin D. Jones, Jeffery L. Dang posted to assembly by jasontsai on 2009-01-19 23:51:06 as
	Sequencing of natural strains of Arabidopsis thaliana with short reads. [My Copy] Genome research, Vol. 18, No. 12. (29 December 2008), pp. 2024-2033. by Stephan Ossowski, Korbinian Schneeberger, Richard M. Clark, Christa Lanz, Norman Warthmann, Detlef Weigel posted to 454 assembly assembly_projects by jasontsai on 2009-01-19 23:47:40 as along with 11 people and 2 groups seninp n00c APRegier sameersoi dandaman stajich xwbcn natstreet druvus GustavoLacerda semrich Mycology Notre Dame Bioinformatics
	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome Research, Vol. 19, No. 2. (3 February 2009), pp. 336-346. by Mark J. Chaisson, Dumitru Brinza, Pavel A. Pevzner posted to assembly by jasontsai on 2009-01-19 23:47:17 as along with 17 people and 1 group n00c carlk APRegier jandot jonilaserson natstreet dakelley jessopher orzenil AaronDarling sphsmith nmohelli jbhiatt druvus hpaces GustavoLacerda stajich Mycology
	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to assembly by jasontsai on 2009-01-19 23:41:31 as along with 42 people and 3 groups ajsferreira vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley acn druvus natstreet nmohelli stajich farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	Short read fragment assembly of bacterial genomes [My Copy] Genome Research, Vol. 18, No. 2. (1 February 2008), pp. 324-330. by Mark J. Chaisson, Pavel A. Pevzner posted to 454 assembly euler by jasontsai on 2009-01-19 23:32:32 as along with 17 people n00c pachorip APRegier thegoose2 dakelley Neeperando hpaces idoerg druvus acn orzenil azazello GustavoLacerda dandaman caseybrown iris42 tharris
	Aggressive assembly of pyrosequencing reads with mates [My Copy] Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2818-2824. by Jason R. Miller, Arthur L. Delcher, Sergey Koren, et al.Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, Granger Sutton posted to 454 assembly celera by jasontsai on 2009-01-12 12:13:45 as along with 17 people and 2 groups GustavoLacerda n00c APRegier jonilaserson dakelley idoerg orzenil ela503 natstreet druvus azazello acn jmeppley cisevol malcook Neeperando djkt BergmanLab SIMR bioinformatics
	Advantages and limitations of next-generation sequencing technologies: a comparison of electrophoresis and non-electrophoresis methods. [My Copy] Electrophoresis, Vol. 29, No. 23. (3 December 2008), pp. 4618-4626. by Daniel G. Hert, Christopher P. Fredlake, Annelise E. Barron posted to assembly ngs review by jasontsai on 2009-01-11 23:09:27 as along with 4 people and 1 group jsatkosk jbhiatt pkonings malcook SIMR bioinformatics
	SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses [My Copy] Bioinformatics (6 January 2009), btp011. by Michael S. Barker, Katrina M. Dlugosch, Reddy, Sarah N. Amyotte, Loren H. Rieseberg posted to 454 assembly est by jasontsai on 2009-01-10 00:47:02 as along with 5 people semrich jmeppley druvus felsani djkt

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ngs	20
population-genomics	17
assembly	15
review	15
short-read-mapping	10
recombination-rates	8
transcriptome	7
yeast	6
map	6
est	6
454	5
snp-calling	5
assembly_projects	4
hotspots	4
sex	4
human	3
taiwanese-origin	3
solexa	3
bgc	2
mutation_rate	2
parasites	2
gap-closing	2
purifying	2
cnv	2
gene-prediction	2
techniques	2
short-read-assembler	2
pop	2
gc	2
indels	1
evolution	1
fungus	1
career	1
amos	1
association-study	1
genome_diversity_project	1
sequencing_technologies	1
generations	1
codon	1
effective-population-size	1
exome	1
allele_frequencies	1
annotation	1
neutral_evolution	1
adaptive_evolution	1
worms	1
ass	1
genetic	1
mitochrondria	1
gc-bias	1
human_genome_diversity	1
euler	1
mtdna-haplotypes	1
celera	1

jasontsai's assembly [15 articles] Export

jasontsai's tags