jasontsai's ngs [20 articles] Export

Recent papers added to jasontsai's library classified by the tag ngs. You can also see everyone's ngs.

	Sense from sequence reads: methods for alignment and assembly [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to review ngs by jasontsai on 2009-11-04 14:40:34 as along with 10 people oannes74 Thaverkamp natstreet seb1 druvus chvlyl GeeSharpMinor n00c venancio desany
	Computational methods for discovering structural variation with next-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S13-S20. by Paul Medvedev, Monica Stanciu, Michael Brudno posted to snp-calling ngs by jasontsai on 2009-11-04 14:39:04 as along with 13 people and 1 group oannes74 toszko kiekyon michaelbarton sameersoi heliopais druvus GeeSharpMinor Peiyong n00c gdv desany qayub Journal picks
	inGAP: an integrated next-generation genome analysis pipeline [My Copy] Bioinformatics (30 October 2009), btp615. by Ji Qi, Fangqing Zhao, Anne Buboltz, Stephan C. Schuster posted to ngs by jasontsai on 2009-11-04 14:38:22 as along with 4 people natstreet n00c heliopais druvus
	SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. [My Copy] Nat Methods (24 February 2008) by Curtis P P. Van Tassell, Timothy P L P. Smith, Lakshmi K K. Matukumalli, et al.Jeremy F F. Taylor, Robert D D. Schnabel, Cynthia Taylor T. Lawley, Christian D D. Haudenschild, Stephen S S. Moore, Wesley C C. Warren, Tad S S. Sonstegard posted to snp-calling ngs map by jasontsai on 2009-08-18 14:41:32 as along with 4 people jsatkosk orzenil lpanunzi guhjy
	BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. [My Copy] Nature methods, Vol. 6, No. 9. (09 September 2009), pp. 677-681. by Ken Chen, John W. Wallis, Michael D. McLellan, et al.David E. Larson, Joelle M. Kalicki, Craig S. Pohl, Sean D. McGrath, Michael C. Wendl, Qunyuan Zhang, Devin P. Locke, Xiaoqi Shi, Robert S. Fulton, Timothy J. Ley, Richard K. Wilson, Li Ding, Elaine R. Mardis posted to short-read-mapping ngs map indels by jasontsai on 2009-08-15 18:01:45 as along with 9 people and 1 group dakelley fenghezi daed natstreet druvus sitalange qayub gdb danmaclean Journal picks
	MAQGene: software to facilitate C. elegans mutant genome sequence analysis [My Copy] Nat Meth, Vol. 6, No. 8. (20 August 2009), pp. 549-549. by Henry Bigelow, Maria Doitsidou, Sumeet Sarin, Oliver Hobert posted to ngs gene-prediction by jasontsai on 2009-08-15 18:01:00 as
	Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling [My Copy] PLoS ONE, Vol. 4, No. 7. (28 July 2009), e6323. by Nicola Palmieri, Christian Schlötterer posted to map ngs review transcriptome by jasontsai on 2009-08-08 15:35:21 as along with 14 people and 3 groups darian debasis mqbphcw3 stubrown Thaverkamp PabloMarin ThomasDOtto heliopais guhjy cisevol n00c natstreet druvus jbhiatt Journal picks JLab BergmanLab
	SHOREmap: simultaneous mapping and mutation identification by deep sequencing [My Copy] Nat Meth, Vol. 6, No. 8. (August 2009), pp. 550-551. by Korbinian Schneeberger, Stephan Ossowski, Christa Lanz, et al.Trine Juul, Annabeth H. Petersen, Kare L. Nielsen, Jan-Elo Jorgensen, Detlef Weigel, Stig U. Andersen posted to map ngs by jasontsai on 2009-08-08 15:33:04 as along with 1 person danmaclean
	Comparison of next generation sequencing technologies for transcriptome characterization. [My Copy] BMC genomics, Vol. 10, No. 1. (1 August 2009), 347. by P. Kerr Wall, Jim Leebens-Mack, André S. Chanderbali, et al.Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn P. Tomsho, Yi Hu, John E. Carlson, Hong Ma, Stephan C. Schuster, Douglas E. Soltis, Pamela S. Soltis, Naomi Altman, Claude W. dePamphilis posted to ngs transcriptome by jasontsai on 2009-08-05 11:47:23 as along with 18 people and 4 groups daveGerrard daforerog feeldead n00c debasis jgill mqbphcw3 sotacam GustavoLacerda adamjamesreid dswan mlog gwallau ewilban1 ThomasDOtto polivares natstreet druvus Journal picks Bioinformatics LabDros BergmanLab
	Chimeric transcript discovery by paired-end transcriptome sequencing. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (10 July 2009) by Christopher A. Maher, Nallasivam Palanisamy, John C. Brenner, et al.Xuhong Cao, Shanker Kalyana-Sundaram, Shujun Luo, Irina Khrebtukova, Terrence R. Barrette, Catherine Grasso, Jindan Yu, Robert J. Lonigro, Gary Schroth, Chandan Kumar-Sinha, Arul M. Chinnaiyan posted to ngs short-read-mapping by jasontsai on 2009-07-19 15:20:37 as along with 2 people torfinnnome guhjy
	HI: haplotype improver using paired-end short reads. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2436-2437. by Quan Long, Daniel MacArthur, Zemin Ning, Chris Tyler-Smith posted to ngs short-read-mapping by jasontsai on 2009-07-19 15:02:28 as along with 5 people and 1 group PabloMarin djkt pkonings natstreet guhjy Journal picks
	Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2878-2881. by Bas E. Dutilh, Martijn A. Huynen, Marc Strous posted to assembly ngs short-read-assembler short-read-mapping solexa techniques by jasontsai on 2009-07-07 08:11:52 as along with 7 people and 1 group dakelley druvus kinestetika ThomasDOtto skembel sharpton jmeppley iSEEM
	Managing and analyzing next-generation sequence data. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted to ngs review by jasontsai on 2009-07-02 14:47:41 as along with 36 people and 3 groups hpaces gdv GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jmeppley rdiaz michaelbarton dswan reyez kshameer TRHvidsten djkt ppgardne BergmanLab Bioinformatics Journal picks
	The Sequence Alignment/Map format and SAMtools [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2078-2079. by Heng Li, Bob Handsaker, Alec Wysoker, et al.Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin, 1000 Genome Project Data Processing Subgroup posted to ngs short-read-mapping by jasontsai on 2009-07-02 14:46:59 as along with 25 people and 2 groups seb1 heliopais urgi idonaldson GustavoLacerda stubrown cassj kshameer ciax polivares carlosjavierna jandot katholt jmcq guhjy orzenil operon farhat AlexBateman chrisamiller nuin n00c natstreet sandfire druvus BergmanLab Journal picks
	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted to ngs solexa by jasontsai on 2009-07-02 14:38:24 as along with 19 people and 4 groups dakelley sotacam lh49 djkt rtogawa cassj dswan torfinnnome rschulz natstreet druvus jmeppley ghattem nuin polivares n00c aprasad niallhaslam idoerg Bioinformatics BergmanLab SIMR bioinformatics Journal picks
	The impact of next-generation sequencing technology on genetics. [My Copy] Trends in genetics : TIG, Vol. 24, No. 3. (11 March 2008), pp. 133-141. by Elaine R. Mardis posted to ngs review by jasontsai on 2009-07-02 14:37:42 as along with 23 people and 2 groups n00c kiekyon jessopher daforerog psique idoerg jameswasmuth floatingpoint brdwilde neils jmcq jbsaltz guhjy dchughes djkt niallhaslam urgi zerojinx hpaces jlgreen cybaer1 giovenko druvus Green Lab iSEEM
	Closing gaps in the human genome using sequencing by synthesis [My Copy] Genome Biology, Vol. 10, No. 6. (2009), R60. by Manuel Garber, Michael Zody, Harindra Arachchi, et al.Aaron Berlin, Sante Gnerre, Lisa Green, Niall Lennon, Chad Nusbaum posted to 454 gap-closing ngs by jasontsai on 2009-06-05 10:17:33 as along with 4 people and 1 group APRegier ppgardne kiekyon scjparker Journal picks
	Next-generation sequencing of vertebrate experimental organisms. [My Copy] Mammalian genome : official journal of the International Mammalian Genome Society, Vol. 20, No. 6. (19 June 2009), pp. 327-338. by Daniel J. Turner, Thomas M. Keane, Ian Sudbery, David J. Adams posted to ngs review by jasontsai on 2009-06-04 15:44:13 as along with 6 people and 1 group n00c jmcq guhjy jessopher druvus AlexBateman Journal picks
	Next-generation sequencing: from basic research to diagnostics. [My Copy] Clinical chemistry, Vol. 55, No. 4. (1 April 2009), pp. 641-658. by Karl V. Voelkerding, Shale A. Dames, Jacob D. Durtschi posted to ngs review by jasontsai on 2009-04-05 18:46:42 as along with 6 people giovenko orzenil n00c natstreet druvus guhjy
	Advantages and limitations of next-generation sequencing technologies: a comparison of electrophoresis and non-electrophoresis methods. [My Copy] Electrophoresis, Vol. 29, No. 23. (3 December 2008), pp. 4618-4626. by Daniel G. Hert, Christopher P. Fredlake, Annelise E. Barron posted to assembly ngs review by jasontsai on 2009-01-11 23:09:27 as along with 3 people and 1 group jbhiatt pkonings malcook SIMR bioinformatics

Note: You may cite this page as: http://www.citeulike.org/user/jasontsai/tag/ngs

ngs	20
population-genomics	17
assembly	15
review	15
short-read-mapping	10
recombination-rates	8
transcriptome	7
est	6
map	6
yeast	6
454	5
snp-calling	5
assembly_projects	4
hotspots	4
sex	4
human	3
solexa	3
taiwanese-origin	3
bgc	2
cnv	2
gap-closing	2
gc	2
gene-prediction	2
mutation_rate	2
parasites	2
pop	2
purifying	2
short-read-assembler	2
techniques	2
adaptive_evolution	1
allele_frequencies	1
amos	1
annotation	1
ass	1
association-study	1
career	1
celera	1
codon	1
effective-population-size	1
euler	1
evolution	1
exome	1
fungus	1
gc-bias	1
generations	1
genetic	1
genome_diversity_project	1
human_genome_diversity	1
indels	1
mitochrondria	1
mtdna-haplotypes	1
neutral_evolution	1
sequencing_technologies	1
worms	1

jasontsai's ngs [20 articles] Export

jasontsai's tags