jasontsai's short-read-mapping [10 articles] Export

Recent papers added to jasontsai's library classified by the tag short-read-mapping. You can also see everyone's short-read-mapping.

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	The theory of discovering rare variants via DNA sequencing [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 485. by Michael Wendl, Richard Wilson posted to solexa snp-calling short-read-mapping cnv by jasontsai on 2009-11-04 14:07:22 as along with 4 people jsatkosk merpublic n00c druvus
	BreakDancer: an algorithm for high-resolution mapping of genomic structural variation [My Copy] Nature Methods, Vol. 6, No. 9. (09 August 2009), pp. 677-681. by Ken Chen, John W. Wallis, Michael D. McLellan, et al.David E. Larson, Joelle M. Kalicki, Craig S. Pohl, Sean D. McGrath, Michael C. Wendl, Qunyuan Zhang, Devin P. Locke, Xiaoqi Shi, Robert S. Fulton, Timothy J. Ley, Richard K. Wilson, Li Ding, Elaine R. Mardis posted to short-read-mapping ngs map indels by jasontsai on 2009-08-15 18:01:45 as along with 12 people and 1 group Leaflet heliopais stubrown dakelley fenghezi daed natstreet druvus sitalange qayub gdb danmaclean Journal picks
	Chimeric transcript discovery by paired-end transcriptome sequencing. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (10 July 2009) by Christopher A. Maher, Nallasivam Palanisamy, John C. Brenner, et al.Xuhong Cao, Shanker Kalyana-Sundaram, Shujun Luo, Irina Khrebtukova, Terrence R. Barrette, Catherine Grasso, Jindan Yu, Robert J. Lonigro, Gary Schroth, Chandan Kumar-Sinha, Arul M. Chinnaiyan posted to ngs short-read-mapping by jasontsai on 2009-07-19 15:20:37 as along with 2 people torfinnnome guhjy
	HI: haplotype improver using paired-end short reads. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2436-2437. by Quan Long, Daniel MacArthur, Zemin Ning, Chris Tyler-Smith posted to ngs short-read-mapping by jasontsai on 2009-07-19 15:02:28 as along with 5 people and 1 group PabloMarin djkt pkonings natstreet guhjy Journal picks
	Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2878-2881. by Bas E. Dutilh, Martijn A. Huynen, Marc Strous posted to assembly ngs short-read-assembler short-read-mapping solexa techniques by jasontsai on 2009-07-07 08:11:52 as along with 7 people and 1 group dakelley druvus kinestetika ThomasDOtto skembel sharpton jmeppley iSEEM
	The Sequence Alignment/Map format and SAMtools [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2078-2079. by Heng Li, Bob Handsaker, Alec Wysoker, et al.Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin, 1000 Genome Project Data Processing Subgroup posted to ngs short-read-mapping by jasontsai on 2009-07-02 14:46:59 as along with 27 people and 2 groups cthachuk hzoltan seb1 heliopais urgi idonaldson GustavoLacerda stubrown cassj kshameer ciax polivares carlosjavierna jandot katholt jmcq guhjy orzenil operon farhat AlexBateman chrisamiller nuin n00c natstreet sandfire druvus BergmanLab Journal picks
	A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1118-1124. by Tobias Rausch, Sergey Koren, Gennady Denisov, et al.David Weese, Anne-Katrin Emde, Andreas Doring, Knut Reinert posted to assembly gap-closing short-read-mapping by jasontsai on 2009-07-02 14:17:05 as along with 19 people and 2 groups jfr azazello hzoltan cthachuk GustavoLacerda n00c nuin dakelley skembel Thaverkamp reyez TRHvidsten djkt hpaces APRegier pengchy natstreet druvus darian iSEEM Bioinformatics
	Fast and Accurate Short Read Alignment with Burrows-Wheeler Transform. [My Copy] Bioinformatics (Oxford, England) (18 May 2009) by Heng Li, Richard Durbin posted to short-read-mapping by jasontsai on 2009-06-04 15:44:52 as along with 3 people and 2 groups stajich jmeppley AlexBateman Mycology Journal picks
	SNP detection for massively parallel whole-genome resequencing [My Copy] Genome Research, Vol. 19, No. 6. (6 June 2009), pp. 1124-1132. by Ruiqiang Li, Yingrui Li, Xiaodong Fang, et al.Huanming Yang, Jian Wang, Karsten Kristiansen, Jun Wang posted to short-read-mapping snp-calling by jasontsai on 2009-06-04 14:59:02 as along with 18 people torfinnnome hzoltan seb1 maren adijr greg jandot guhjy jonilaserson n00c druvus reyez sandfire djkt sameersoi natstreet jbhiatt GeeSharpMinor
	SOAP: short oligonucleotide alignment program [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 713-714. by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang posted to map short-read-mapping by jasontsai on 2009-06-04 14:38:50 as along with 26 people cthachuk hzoltan antonkratz adijr jmanning2k pachorip jmcq jsatkosk n00c hpaces skembel maren natstreet druvus orzenil pengchy umit guhjy ghattem GustavoLacerda niallhaslam mdimon caseybrown urgi bozdagd waszak

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ngs	20
population-genomics	17
assembly	15
review	15
short-read-mapping	10
recombination-rates	8
transcriptome	7
est	6
map	6
yeast	6
454	5
snp-calling	5
assembly_projects	4
hotspots	4
sex	4
human	3
solexa	3
taiwanese-origin	3
bgc	2
cnv	2
gap-closing	2
gc	2
gene-prediction	2
mutation_rate	2
parasites	2
pop	2
purifying	2
short-read-assembler	2
techniques	2
adaptive_evolution	1
allele_frequencies	1
amos	1
annotation	1
ass	1
association-study	1
career	1
celera	1
codon	1
effective-population-size	1
euler	1
evolution	1
exome	1
fungus	1
gc-bias	1
generations	1
genetic	1
genome_diversity_project	1
human_genome_diversity	1
indels	1
mitochrondria	1
mtdna-haplotypes	1
neutral_evolution	1
sequencing_technologies	1
worms	1

jasontsai's short-read-mapping [10 articles] Export

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